Conservation of cofitness between CCNA_00280 and CCNA_03756 in Caulobacter crescentus NA1000

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Caulobacter crescentus NA1000 1.0 CCNA_00280 tRNA pseudouridine synthase A 1.0 CCNA_03756 cation efflux family transporter 0.65 17
Caulobacter crescentus NA1000 Δfur 1.00 CCNA_00280 tRNA pseudouridine synthase A 1.00 CCNA_03756 cation efflux family transporter — —
Brevundimonas sp. GW460-12-10-14-LB2 0.70 A4249_RS12340 tRNA pseudouridine(38-40) synthase TruA 0.50 A4249_RS11365 cation diffusion facilitator family transporter low > 48
Magnetospirillum magneticum AMB-1 0.56 AMB_RS01225 tRNA pseudouridine(38-40) synthase TruA 0.39 AMB_RS04510 ferrous iron transporter low > 64
Sinorhizobium meliloti 1021 0.55 SMc01099 tRNA pseudouridine synthase A 0.18 SMc02724 hypothetical protein low > 103
Agrobacterium fabrum C58 0.54 Atu0368 tRNA pseudouridine synthase I 0.21 Atu2274 cation efflux system protein low > 89
Phaeobacter inhibens DSM 17395 0.54 PGA1_c05650 tRNA pseudouridine synthase A 0.23 PGA1_c01130 putative cation efflux pump low > 62
Azospirillum sp. SherDot2 0.53 MPMX19_02005 tRNA pseudouridine synthase A 0.34 MPMX19_00714 Ferrous-iron efflux pump FieF — —
Rhodospirillum rubrum S1H 0.52 Rru_A3352 Pseudouridylate synthase (NCBI) 0.39 Rru_A2628 Cation efflux protein (NCBI) — —
Sphingomonas koreensis DSMZ 15582 0.47 Ga0059261_0647 tRNA pseudouridine(38-40) synthase 0.34 Ga0059261_1887 cation diffusion facilitator family transporter low > 68
Dechlorosoma suillum PS 0.38 Dsui_3194 pseudouridylate synthase I 0.22 Dsui_0813 cation diffusion facilitator family transporter low > 51
Dickeya dianthicola 67-19 0.35 HGI48_RS14435 tRNA pseudouridine(38-40) synthase TruA 0.30 HGI48_RS20535 CDF family cation-efflux transporter FieF low > 71
Dickeya dadantii 3937 0.35 DDA3937_RS14465 tRNA pseudouridine(38-40) synthase TruA 0.30 DDA3937_RS00840 CDF family cation-efflux transporter FieF low > 74
Dickeya dianthicola ME23 0.35 DZA65_RS15370 tRNA pseudouridine(38-40) synthase TruA 0.30 DZA65_RS21580 CDF family cation-efflux transporter FieF low > 75
Shewanella amazonensis SB2B 0.35 Sama_2150 truA tRNA pseudouridine synthase A (RefSeq) 0.34 Sama_3430 cation efflux family protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.35 Shewana3_1479 truA tRNA pseudouridine synthase A (RefSeq) 0.30 Shewana3_0255 cation diffusion facilitator family transporter (RefSeq) 0.68 27
Shewanella loihica PV-4 0.34 Shew_2306 tRNA pseudouridine synthase A (RefSeq) 0.29 Shew_3568 cation diffusion facilitator family transporter (RefSeq) — —
Enterobacter asburiae PDN3 0.34 EX28DRAFT_0286 tRNA pseudouridine(38-40) synthase 0.34 EX28DRAFT_4389 cation diffusion facilitator family transporter low > 76
Enterobacter sp. TBS_079 0.33 MPMX20_03253 tRNA pseudouridine synthase A 0.34 MPMX20_04553 Ferrous-iron efflux pump FieF low > 85
Vibrio cholerae E7946 ATCC 55056 0.33 CSW01_05090 tRNA pseudouridine(38-40) synthase TruA 0.33 CSW01_13580 cation-efflux pump FieF low > 62
Pseudomonas sp. RS175 0.33 PFR28_02817 tRNA pseudouridine synthase A 0.32 PFR28_03835 Ferrous-iron efflux pump FieF low > 88
Pseudomonas fluorescens FW300-N2E3 0.33 AO353_20660 pseudouridine synthase 0.33 AO353_06310 ferrous iron transporter low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.33 Psyr_1662 tRNA pseudouridine synthase 0.37 Psyr_4333 Cation efflux protein low > 86
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_7 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.35 Pf1N1B4_2726 Cobalt-zinc-cadmium resistance protein low > 87
Pseudomonas syringae pv. syringae B728a 0.33 Psyr_1662 tRNA pseudouridine synthase 0.37 Psyr_4333 Cation efflux protein low > 86
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_3941 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.35 PfGW456L13_1393 Cobalt-zinc-cadmium resistance protein low > 87
Variovorax sp. SCN45 0.33 GFF3885 tRNA pseudouridine(38-40) synthase (EC 5.4.99.12) 0.14 GFF2069 Cobalt-zinc-cadmium resistance protein low > 127
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_21435 pseudouridine synthase 0.34 AO356_15475 ferrous iron transporter low > 104
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_70 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.32 Pf6N2E2_5036 Cobalt-zinc-cadmium resistance protein low > 103
Pseudomonas simiae WCS417 0.33 PS417_18565 pseudouridine synthase 0.34 PS417_24560 ferrous iron transporter — —
Pseudomonas fluorescens SBW25 0.33 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.34 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.33 GFF1934 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.34 GFF2282 Cobalt-zinc-cadmium resistance protein low > 78
Pseudomonas fluorescens SBW25-INTG 0.33 PFLU_RS20545 tRNA pseudouridine(38-40) synthase TruA 0.34 PFLU_RS26490 cation diffusion facilitator family transporter low > 109
Escherichia coli ECRC62 0.33 BNILDI_13225 truA tRNA pseudouridine(38-40) synthase TruA 0.32 BNILDI_05555 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECRC102 0.32 NIAGMN_20445 truA aspartate-semialdehyde dehydrogenase 0.32 NIAGMN_11590 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECOR38 0.32 HEPCGN_21875 truA aspartate-semialdehyde dehydrogenase 0.32 HEPCGN_12480 fieF CDF family cation-efflux transporter FieF low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.32 OHPLBJKB_01387 tRNA pseudouridine synthase A 0.32 OHPLBJKB_04136 Ferrous-iron efflux pump FieF low > 73
Escherichia coli ECRC98 0.32 JDDGAC_26630 truA aspartate-semialdehyde dehydrogenase 0.32 JDDGAC_17460 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECRC101 0.32 OKFHMN_22670 truA aspartate-semialdehyde dehydrogenase 0.32 OKFHMN_13835 fieF CDF family cation-efflux transporter FieF — —
Serratia liquefaciens MT49 0.32 IAI46_17840 tRNA pseudouridine(38-40) synthase TruA 0.31 IAI46_24650 CDF family cation-efflux transporter FieF low > 86
Escherichia coli Nissle 1917 0.32 ECOLIN_RS13435 tRNA pseudouridine(38-40) synthase TruA 0.32 ECOLIN_RS22550 CDF family cation-efflux transporter FieF low > 52
Escherichia coli ECRC99 0.32 KEDOAH_05525 truA aspartate-semialdehyde dehydrogenase 0.32 KEDOAH_14320 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECRC101 0.32 MCAODC_13710 truA aspartate-semialdehyde dehydrogenase 0.32 MCAODC_04335 fieF CDF family cation-efflux transporter FieF — —
Escherichia coli ECOR27 0.32 NOLOHH_14305 truA tRNA pseudouridine(38-40) synthase TruA 0.32 NOLOHH_05970 fieF CDF family cation-efflux transporter FieF low > 57
Escherichia coli BL21 0.32 ECD_02243 tRNA pseudouridine(38-40) synthase 0.32 ECD_03800 ferrous iron and zinc transporter — —
Escherichia coli BW25113 0.32 b2318 truA tRNA pseudouridine synthase A (NCBI) 0.32 b3915 fieF ferrous iron efflux protein F (NCBI) low > 76
Pseudomonas putida KT2440 0.32 PP_1994 tRNA pseudouridine (38-40)synthase 0.34 PP_4774 divalent cation efflux transporter low > 96
Pseudomonas sp. S08-1 0.32 OH686_04450 tRNA pseudouridine(38-40) synthase 0.33 OH686_08810 Ferrous-iron efflux pump FieF low > 80
Escherichia fergusonii Becca 0.32 EFB2_01540 tRNA pseudouridine synthase A 0.32 EFB2_04703 Ferrous-iron efflux pump FieF low > 86
Klebsiella michiganensis M5al 0.32 BWI76_RS20380 tRNA pseudouridine(38-40) synthase TruA 0.32 BWI76_RS00730 cation-efflux pump FieF low > 92
Pectobacterium carotovorum WPP14 0.32 HER17_RS06990 tRNA pseudouridine(38-40) synthase TruA 0.29 HER17_RS00720 CDF family cation-efflux transporter FieF low > 75
Rahnella sp. WP5 0.32 EX31_RS19600 tRNA pseudouridine(38-40) synthase TruA 0.31 EX31_RS10790 cation diffusion facilitator family transporter low > 89
Cupriavidus basilensis FW507-4G11 0.31 RR42_RS14370 tRNA pseudouridine synthase A 0.16 RR42_RS30535 cobalt transporter — —
Variovorax sp. OAS795 0.31 ABID97_RS08440 tRNA pseudouridine(38-40) synthase TruA 0.12 ABID97_RS24945 cation diffusion facilitator family transporter low > 91
Pantoea sp. MT58 0.31 IAI47_06245 tRNA pseudouridine(38-40) synthase TruA 0.30 IAI47_00775 CDF family cation-efflux transporter FieF low > 76
Acidovorax sp. GW101-3H11 0.31 Ac3H11_1532 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.17 Ac3H11_4676 Cobalt-zinc-cadmium resistance protein low > 79
Erwinia tracheiphila SCR3 0.31 LU632_RS07825 truA tRNA pseudouridine(38-40) synthase TruA 0.30 LU632_RS21845 fieF CDF family cation-efflux transporter FieF — —
Herbaspirillum seropedicae SmR1 0.31 HSERO_RS16485 tRNA pseudouridine synthase A 0.15 HSERO_RS02620 cobalt transporter low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF3357 tRNA pseudouridine synthase A (EC 4.2.1.70) 0.15 GFF1671 Cobalt-zinc-cadmium resistance protein low > 90
Pseudomonas stutzeri RCH2 0.30 Psest_2585 pseudouridylate synthase I 0.34 Psest_0573 cation diffusion facilitator family transporter low > 67
Phocaeicola dorei CL03T12C01 0.29 ABI39_RS12690 tRNA pseudouridine(38-40) synthase TruA 0.15 ABI39_RS06105 cation transporter low > 72
Castellaniella sp019104865 MT123 0.29 ABCV34_RS04265 tRNA pseudouridine(38-40) synthase TruA 0.16 ABCV34_RS08935 cation diffusion facilitator family transporter low > 48
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS16775 tRNA pseudouridine(38-40) synthase TruA 0.15 HMPREF1058_RS10965 cation transporter low > 67
Lysobacter sp. OAE881 0.28 ABIE51_RS08245 tRNA pseudouridine(38-40) synthase TruA 0.10 ABIE51_RS09615 cation diffusion facilitator family transporter low > 62
Bacteroides ovatus ATCC 8483 0.26 BACOVA_05075 tRNA pseudouridine synthase A 0.12 BACOVA_03811 cation diffusion facilitator family transporter low > 94
Bacteroides thetaiotaomicron VPI-5482 0.26 BT4237 tRNA pseudouridine synthase A (NCBI ptt file) 0.16 BT1141 cation efflux family protein (NCBI ptt file) low > 81
Parabacteroides merdae CL09T00C40 0.26 HMPREF1078_RS16085 tRNA pseudouridine(38-40) synthase TruA 0.13 HMPREF1078_RS02220 cation diffusion facilitator family transporter low > 61
Pontibacter actiniarum KMM 6156, DSM 19842 0.26 CA264_17725 tRNA pseudouridine synthase A 0.14 CA264_04200 cation-efflux pump low > 74
Pedobacter sp. GW460-11-11-14-LB5 0.25 CA265_RS15580 tRNA pseudouridine(38-40) synthase TruA 0.18 CA265_RS07520 cation diffusion facilitator family transporter low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.23 Echvi_1728 pseudouridylate synthase I 0.17 Echvi_2537 cation diffusion facilitator family transporter low > 79
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS06250 tRNA pseudouridine(38-40) synthase TruA 0.15 HMPREF1181_RS01545 cation transporter low > 56
Mycobacterium tuberculosis H37Rv 0.20 Rv3455c Probable tRNA pseudouridine synthase a TruA (pseudouridylate synthase I) (pseudouridine synthase I) (uracil hydrolyase) 0.10 Rv2025c Conserved membrane protein — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.19 ABZR88_RS21140 tRNA pseudouridine(38-40) synthase TruA 0.12 ABZR88_RS06065 cation diffusion facilitator family transporter low > 71
Methanococcus maripaludis JJ 0.12 MMJJ_RS03925 tRNA pseudouridine(38-40) synthase TruA 0.10 MMJJ_RS01680 cation diffusion facilitator family transporter low > 28
Methanococcus maripaludis S2 0.12 MMP_RS01450 tRNA pseudouridine(38-40) synthase TruA 0.10 MMP_RS03385 cation diffusion facilitator family transporter low > 25

Not shown: 28 genomes with orthologs for CCNA_00280 only; 1 genomes with orthologs for CCNA_03756 only