| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pontibacter actiniarum KMM 6156, DSM 19842 | 1.0 | CA264_00025 | | RIP metalloprotease RseP | 1.0 | CA264_15205 | | RNA pseudouridine synthase | 0.55 | 14 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.58 | Echvi_4671 | | RIP metalloprotease RseP | 0.65 | Echvi_0642 | | pseudouridine synthase, RluA family | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.45 | ABZR88_RS10585 | | RIP metalloprotease RseP | 0.62 | ABZR88_RS03985 | | RluA family pseudouridine synthase | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS03755 | | RIP metalloprotease RseP | 0.62 | CA265_RS14415 | | pseudouridine synthase | — | — |
| Bacteroides stercoris CC31F | 0.37 | HMPREF1181_RS07905 | | RIP metalloprotease RseP | 0.53 | HMPREF1181_RS03250 | | RluA family pseudouridine synthase | — | — |
| Bacteroides ovatus ATCC 8483 | 0.36 | BACOVA_01430 | | putative RIP metalloprotease RseP | 0.53 | BACOVA_03528 | | pseudouridine synthase, RluA family | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.35 | BT2001 | | membrane-associated zinc metalloprotease (NCBI ptt file) | 0.53 | BT3712 | | ribosomal large subunit pseudouridine synthase D (NCBI ptt file) | — | — |
| Phocaeicola dorei CL03T12C01 | 0.35 | ABI39_RS08170 | | RIP metalloprotease RseP | 0.53 | ABI39_RS02845 | | RluA family pseudouridine synthase | — | — |
| Phocaeicola vulgatus CL09T03C04 | 0.34 | HMPREF1058_RS00550 | | RIP metalloprotease RseP | 0.53 | HMPREF1058_RS08615 | | RluA family pseudouridine synthase | — | — |
| Parabacteroides merdae CL09T00C40 | 0.32 | HMPREF1078_RS15270 | | RIP metalloprotease RseP | 0.55 | HMPREF1078_RS12640 | | RluA family pseudouridine synthase | low | > 61 |
| Herbaspirillum seropedicae SmR1 | 0.21 | HSERO_RS10910 | | peptidase | 0.29 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | low | > 78 |
| Shewanella amazonensis SB2B | 0.21 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | 0.27 | Sama_2605 | | pseudouridylate synthase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.20 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | 0.25 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | — | — |
| Phaeobacter inhibens DSM 17395 | 0.20 | PGA1_c14260 | | peptidase M50 | 0.33 | PGA1_c09000 | | ribosomal large subunit pseudouridine synthase D | low | > 62 |
| Rhodanobacter sp. FW510-T8 | 0.20 | OKGIIK_10175 | rseP | RIP metalloprotease RseP | 0.30 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 52 |
| Shewanella sp. ANA-3 | 0.20 | Shewana3_2808 | | peptidase RseP (RefSeq) | 0.28 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | — | — |
| Marinobacter adhaerens HP15 | 0.20 | HP15_1173 | | membrane-associated zinc metalloprotease | 0.29 | HP15_527 | | pseudouridine synthase, RluA family | low | > 73 |
| Rhodanobacter denitrificans MT42 | 0.20 | LRK55_RS03040 | | RIP metalloprotease RseP | 0.30 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.20 | LRK54_RS03290 | | RIP metalloprotease RseP | 0.30 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 59 |
| Alteromonas macleodii MIT1002 | 0.19 | MIT1002_01011 | | Regulator of sigma E protease | 0.29 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | low | > 70 |
| Acinetobacter radioresistens SK82 | 0.19 | MPMX26_01300 | | Regulator of sigma-E protease RseP | 0.25 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | low | > 36 |
| Kangiella aquimarina DSM 16071 | 0.19 | B158DRAFT_1087 | | site-2 protease. Metallo peptidase. MEROPS family M50B | 0.27 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | low | > 40 |
| Dyella japonica UNC79MFTsu3.2 | 0.19 | ABZR86_RS21620 | | RIP metalloprotease RseP | 0.28 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Pectobacterium carotovorum WPP14 | 0.18 | HER17_RS16300 | | sigma E protease regulator RseP | 0.26 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Serratia liquefaciens MT49 | 0.18 | IAI46_20225 | | sigma E protease regulator RseP | 0.26 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Dinoroseobacter shibae DFL-12 | 0.18 | Dshi_1498 | | putative membrane-associated zinc metalloprotease (RefSeq) | 0.31 | Dshi_2610 | | pseudouridine synthase, RluA family (RefSeq) | low | > 64 |
| Vibrio cholerae E7946 ATCC 55056 | 0.18 | CSW01_11475 | | zinc metalloprotease | 0.26 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Variovorax sp. OAS795 | 0.18 | ABID97_RS17135 | | RIP metalloprotease RseP | 0.25 | ABID97_RS14190 | | RluA family pseudouridine synthase | low | > 91 |
| Lysobacter sp. OAE881 | 0.17 | ABIE51_RS06905 | | RIP metalloprotease RseP | 0.27 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 62 |
| Variovorax sp. SCN45 | 0.17 | GFF386 | | Membrane-associated zinc metalloprotease | 0.26 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | low | > 127 |
| Rahnella sp. WP5 | 0.17 | EX31_RS13000 | | sigma E protease regulator RseP | 0.26 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Klebsiella michiganensis M5al | 0.17 | BWI76_RS05250 | | zinc metallopeptidase RseP | 0.26 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | — | — |
| Pantoea sp. MT58 | 0.17 | IAI47_15495 | | sigma E protease regulator RseP | 0.26 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC62 | 0.17 | BNILDI_09150 | rseP | sigma E protease regulator RseP | 0.26 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.17 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | 0.26 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Escherichia fergusonii Becca | 0.17 | EFB2_03868 | | Regulator of sigma-E protease RseP | 0.26 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Escherichia coli Nissle 1917 | 0.17 | ECOLIN_RS00960 | | sigma E protease regulator RseP | 0.26 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli BW25113 | 0.17 | b0176 | yaeL | zinc metallopeptidase (NCBI) | 0.26 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | — | — |
| Escherichia coli BL21 | 0.17 | ECD_00174 | | inner membrane zinc RIP metalloprotease; RpoE activator, by degrading RseA; cleaved signal peptide endoprotease | 0.26 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Escherichia coli ECOR27 | 0.17 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | 0.26 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECOR38 | 0.17 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | 0.26 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Pseudomonas sp. RS175 | 0.17 | PFR28_00403 | | Regulator of sigma-E protease RseP | 0.28 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | low | > 88 |
| Escherichia coli ECRC101 | 0.17 | MCAODC_00690 | rseP | sigma E protease regulator RseP | 0.26 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC99 | 0.17 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | 0.26 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC100 | 0.17 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | 0.26 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC98 | 0.17 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | 0.26 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Escherichia coli ECRC102 | 0.17 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | 0.26 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | — | — |
| Ralstonia solanacearum UW163 | 0.17 | UW163_RS13740 | | RIP metalloprotease RseP | 0.30 | UW163_RS14830 | | RluA family pseudouridine synthase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.17 | RALBFv3_RS00410 | | RIP metalloprotease RseP | 0.30 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | low | > 76 |
| Dickeya dadantii 3937 | 0.16 | DDA3937_RS05150 | | sigma E protease regulator RseP | 0.26 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Pseudomonas fluorescens FW300-N2C3 | 0.16 | AO356_06005 | | zinc metallopeptidase RseP | 0.29 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | low | > 104 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.16 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | 0.25 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Enterobacter asburiae PDN3 | 0.16 | EX28DRAFT_3764 | | RIP metalloprotease RseP | 0.26 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | — | — |
| Dickeya dianthicola ME23 | 0.16 | DZA65_RS05490 | | sigma E protease regulator RseP | 0.26 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 75 |
| Enterobacter sp. TBS_079 | 0.16 | MPMX20_00860 | | Regulator of sigma-E protease RseP | 0.26 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.16 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | 0.28 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Dickeya dianthicola 67-19 | 0.16 | HGI48_RS05150 | | sigma E protease regulator RseP | 0.26 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 71 |
| Erwinia tracheiphila SCR3 | 0.16 | LU632_RS19930 | rseP | sigma E protease regulator RseP | 0.26 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 74 |
| Pseudomonas syringae pv. syringae B728a | 0.16 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.28 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.16 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | 0.28 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | low | > 86 |
| Pseudomonas fluorescens FW300-N1B4 | 0.16 | Pf1N1B4_3091 | | Membrane-associated zinc metalloprotease | 0.28 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Pseudomonas fluorescens SBW25 | 0.15 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.28 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.15 | PFLU_RS06310 | | sigma E protease regulator RseP | 0.28 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.15 | AO353_16495 | | zinc metallopeptidase RseP | 0.28 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | low | > 101 |
| Pseudomonas simiae WCS417 | 0.15 | PS417_06245 | | zinc metallopeptidase RseP | 0.28 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.15 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | 0.29 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Ralstonia solanacearum PSI07 | 0.15 | RPSI07_RS17065 | | RIP metalloprotease RseP | 0.30 | RPSI07_RS15970 | | RluA family pseudouridine synthase | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.15 | RS_RS07080 | | RIP metalloprotease RseP | 0.30 | RS_RS08205 | | RluA family pseudouridine synthase | low | > 80 |
| Pseudomonas putida KT2440 | 0.15 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | 0.29 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.14 | Xcc-8004.3562.1 | | hypothetical protein | 0.27 | Xcc-8004.1362.1 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Castellaniella sp019104865 MT123 | 0.14 | ABCV34_RS04075 | | RIP metalloprotease RseP | 0.26 | ABCV34_RS01885 | | RluA family pseudouridine synthase | low | > 48 |
| Ralstonia sp. UNC404CL21Col | 0.14 | ABZR87_RS11860 | | RIP metalloprotease RseP | 0.30 | ABZR87_RS13315 | | RluA family pseudouridine synthase | low | > 80 |
| Pseudomonas sp. S08-1 | 0.13 | OH686_06450 | | RIP metalloprotease RseP | 0.27 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | — | — |
| Acidovorax sp. GW101-3H11 | 0.13 | Ac3H11_425 | | Membrane-associated zinc metalloprotease | 0.28 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.13 | GFF4908 | | Membrane-associated zinc metalloprotease | 0.25 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | low | > 90 |
| Mycobacterium tuberculosis H37Rv | 0.11 | Rv2869c | | Membrane bound metalloprotease | 0.19 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | — | — |
Not shown: 8 genomes with orthologs for CA264_00025 only; 18 genomes with orthologs for CA264_15205 only