Conservation of cofitness between BPHYT_RS14845 and BPHYT_RS17890 in Burkholderia phytofirmans PsJN

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS14845 cysteine synthase 1.0 BPHYT_RS17890 shikimate kinase 0.73 19
Paraburkholderia bryophila 376MFSha3.1 0.99 H281DRAFT_03911 cysteine synthase 0.98 H281DRAFT_05614 shikimate kinase — —
Paraburkholderia graminis OAS925 0.94 ABIE53_003144 cysteine synthase B 0.97 ABIE53_003741 shikimate kinase — —
Paraburkholderia sabiae LMG 24235 0.94 QEN71_RS04135 cysteine synthase CysM 0.92 QEN71_RS28040 shikimate kinase — —
Ralstonia solanacearum GMI1000 0.83 RS_RS04560 cysteine synthase CysM 0.71 RS_RS14885 shikimate kinase — —
Ralstonia solanacearum UW163 0.82 UW163_RS15985 cysteine synthase CysM 0.70 UW163_RS06675 shikimate kinase — —
Ralstonia solanacearum IBSBF1503 0.82 RALBFv3_RS13825 cysteine synthase CysM 0.70 RALBFv3_RS06940 shikimate kinase — —
Ralstonia sp. UNC404CL21Col 0.82 ABZR87_RS09515 cysteine synthase CysM 0.74 ABZR87_RS02595 shikimate kinase 0.54 13
Ralstonia solanacearum PSI07 0.82 RPSI07_RS19645 cysteine synthase CysM 0.70 RPSI07_RS10295 shikimate kinase — —
Cupriavidus basilensis FW507-4G11 0.81 RR42_RS04535 cysteine synthase 0.72 RR42_RS19010 shikimate kinase 0.71 20
Dechlorosoma suillum PS 0.79 Dsui_1954 cysteine synthase B 0.53 Dsui_1094 shikimate kinase — —
Variovorax sp. SCN45 0.75 GFF6025 Cysteine synthase B (EC 2.5.1.47) 0.44 GFF5324 Shikimate kinase I (EC 2.7.1.71) — —
Variovorax sp. OAS795 0.74 ABID97_RS07880 cysteine synthase CysM 0.48 ABID97_RS23260 shikimate kinase — —
Acidovorax sp. GW101-3H11 0.73 Ac3H11_644 Cysteine synthase B (EC 2.5.1.47) 0.49 Ac3H11_3449 Shikimate kinase I (EC 2.7.1.71) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.73 GFF709 Cysteine synthase B (EC 2.5.1.47) 0.56 GFF1332 Shikimate kinase I (EC 2.7.1.71) low > 90
Marinobacter adhaerens HP15 0.69 HP15_789 cysteine synthase B 0.40 HP15_479 shikimate kinase I — —
Pseudomonas putida KT2440 0.68 PP_1654 cysteine synthase B 0.43 PP_5079 Shikimate kinase — —
Pseudomonas simiae WCS417 0.68 PS417_20160 cysteine synthase 0.44 PS417_01980 shikimate kinase — —
Pseudomonas fluorescens FW300-N2E3 0.68 AO353_02720 cysteine synthase 0.43 AO353_12500 shikimate kinase low > 101
Pseudomonas stutzeri RCH2 0.67 Psest_1638 cysteine synthase B 0.47 Psest_3714 Shikimate kinase — —
Pseudomonas fluorescens FW300-N2C3 0.67 AO356_19050 cysteine synthase 0.43 AO356_09390 shikimate kinase — —
Pseudomonas sp. S08-1 0.67 OH686_18950 cysteine synthase B 0.44 OH686_10020 Shikimate kinase I — —
Pseudomonas fluorescens SBW25-INTG 0.67 PFLU_RS22105 cysteine synthase CysM 0.44 PFLU_RS02025 shikimate kinase AroK — —
Pseudomonas fluorescens SBW25 0.67 PFLU_RS22105 cysteine synthase CysM 0.44 PFLU_RS02025 shikimate kinase AroK — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.66 Psyr_3697 cysteine synthase 0.44 Psyr_0408 shikimate kinase — —
Pseudomonas syringae pv. syringae B728a 0.66 Psyr_3697 cysteine synthase 0.44 Psyr_0408 shikimate kinase — —
Castellaniella sp019104865 MT123 0.66 ABCV34_RS07055 cysteine synthase CysM 0.42 ABCV34_RS12700 shikimate kinase — —
Vibrio cholerae E7946 ATCC 55056 0.64 CSW01_02845 cysteine synthase CysM 0.44 CSW01_13305 shikimate kinase low > 62
Acinetobacter radioresistens SK82 0.61 MPMX26_00536 Cysteine synthase B 0.49 MPMX26_02811 Shikimate kinase 1 — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.61 GFF2055 Cysteine synthase (EC 2.5.1.47) 0.40 GFF629 Shikimate kinase I (EC 2.7.1.71) low > 78
Klebsiella michiganensis M5al 0.61 BWI76_RS20685 cysteine synthase B 0.43 BWI76_RS26090 shikimate kinase — —
Rahnella sp. WP5 0.60 EX31_RS20205 cysteine synthase CysM 0.44 EX31_RS04725 shikimate kinase AroK low > 89
Escherichia coli BW25113 0.60 b2421 cysM cysteine synthase B (O-acetylserine sulfhydrolase B) (NCBI) 0.43 b3390 aroK shikimate kinase I (NCBI) low > 76
Escherichia fergusonii Becca 0.60 EFB2_01456 Cysteine synthase B 0.43 EFB2_00438 Shikimate kinase 1 low > 86
Escherichia coli ECOR38 0.60 HEPCGN_21345 cysM cysteine synthase B 0.43 HEPCGN_15930 aroK shikimate kinase AroK low > 87
Escherichia coli Nissle 1917 0.60 ECOLIN_RS13900 cysteine synthase B 0.43 ECOLIN_RS19365 shikimate kinase AroK — —
Enterobacter sp. TBS_079 0.60 MPMX20_03313 Cysteine synthase B 0.44 MPMX20_04279 Shikimate kinase 1 — —
Enterobacter asburiae PDN3 0.60 EX28DRAFT_0209 cysteine synthase B 0.44 EX28DRAFT_4152 shikimate kinase (EC 2.7.1.71) — —
Escherichia coli ECOR27 0.60 NOLOHH_13850 cysM cysteine synthase B 0.43 NOLOHH_08900 aroK shikimate kinase AroK low > 75
Escherichia coli ECRC62 0.60 BNILDI_12715 cysM cysteine synthase B 0.43 BNILDI_02620 aroK shikimate kinase AroK — —
Escherichia coli BL21 0.60 ECD_02321 cysteine synthase B (O-acetylserine sulfhydrolase B) 0.43 ECD_03242 shikimate kinase I low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.60 OHPLBJKB_01302 Cysteine synthase B 0.43 OHPLBJKB_00313 Shikimate kinase 1 — —
Dickeya dadantii 3937 0.60 DDA3937_RS04425 cysteine synthase CysM 0.38 DDA3937_RS19550 shikimate kinase AroK — —
Dickeya dianthicola ME23 0.59 DZA65_RS04315 cysteine synthase CysM 0.38 DZA65_RS20765 shikimate kinase AroK — —
Shewanella sp. ANA-3 0.59 Shewana3_3188 cysM cysteine synthase B (RefSeq) 0.44 Shewana3_3894 aroK shikimate kinase I (RefSeq) — —
Shewanella oneidensis MR-1 0.59 SO3598 cysM cysteine synthase B (NCBI ptt file) 0.45 SO0286 aroK shikimate kinase (NCBI ptt file) — —
Dickeya dianthicola 67-19 0.59 HGI48_RS04400 cysteine synthase CysM 0.38 HGI48_RS19680 shikimate kinase AroK — —
Pectobacterium carotovorum WPP14 0.57 HER17_RS17210 cysteine synthase CysM 0.44 HER17_RS01775 shikimate kinase AroK — —
Erwinia tracheiphila SCR3 0.55 LU632_RS06675 cysM cysteine synthase CysM 0.44 LU632_RS22870 aroK shikimate kinase AroK — —
Serratia liquefaciens MT49 0.55 IAI46_18490 cysteine synthase CysM 0.43 IAI46_23705 shikimate kinase AroK — —
Pantoea sp. MT58 0.54 IAI47_05405 cysteine synthase CysM 0.43 IAI47_01890 shikimate kinase AroK — —
Mucilaginibacter yixingensis YX-36 DSM 26809 0.54 ABZR88_RS13695 cysteine synthase CysM 0.21 ABZR88_RS19855 shikimate kinase — —
Desulfovibrio vulgaris Hildenborough JW710 0.39 DVU0663 cysK cysteine synthase A (TIGR) 0.23 DVU0892 aroK-1 shikimate kinase (TIGR) — —
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1247.1 Cysteine synthase (EC 2.5.1.47) 0.32 Xcc-8004.1616.1 Shikimate kinase I (EC 2.7.1.71) low > 74
Brevundimonas sp. GW460-12-10-14-LB2 0.36 A4249_RS10255 cysteine synthase A 0.30 A4249_RS04170 shikimate kinase — —
Mycobacterium tuberculosis H37Rv 0.35 Rv2334 Cysteine synthase a CysK1 (O-acetylserine sulfhydrylase A) (O-acetylserine (thiol)-lyase A) (CSASE A) 0.24 Rv2539c Shikimate kinase AroK (SK) — —
Desulfovibrio vulgaris Miyazaki F 0.34 DvMF_2658 cysteine synthase (RefSeq) 0.27 DvMF_1410 Shikimate kinase (RefSeq) — —
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_1208 cystathionine beta-synthase (acetylserine-dependent) (EC 4.2.1.-) 0.43 B158DRAFT_0763 shikimate kinase (EC 2.7.1.71) — —
Alteromonas macleodii MIT1002 0.31 MIT1002_02237 Cysteine synthase A 0.45 MIT1002_00448 Shikimate kinase 1 — —
Shewanella loihica PV-4 0.31 Shew_2382 cysteine synthase A (RefSeq) 0.45 Shew_0213 shikimate kinase I (RefSeq) — —
Shewanella amazonensis SB2B 0.30 Sama_1508 cysteine synthase A (RefSeq) 0.45 Sama_3368 aroK shikimate kinase I (RefSeq) — —
Caulobacter crescentus NA1000 0.30 CCNA_03740 cysteine synthase 0.29 CCNA_03103 shikimate kinase (EC 2.7.1.71) (from data) low > 66
Caulobacter crescentus NA1000 Δfur 0.30 CCNA_03740 cysteine synthase 0.29 CCNA_03103 shikimate kinase low > 67
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_3644 cysteine synthase A 0.31 Ga0059261_3592 shikimate kinase (EC 2.7.1.71) — —
Fusobacterium nucleatum SB010 0.27 HUW76_04155 cysteine synthase A 0.27 HUW76_07055 shikimate kinase — —
Dinoroseobacter shibae DFL-12 0.25 Dshi_0891 cysteine synthase A (RefSeq) 0.37 Dshi_1609 Shikimate kinase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.25 PGA1_c13950 cysteine synthase CysK 0.40 PGA1_c14090 shikimate kinase AroK — —

Not shown: 32 genomes with orthologs for BPHYT_RS14845 only; 1 genomes with orthologs for BPHYT_RS17890 only