Conservation of cofitness between BPHYT_RS12840 and BPHYT_RS16840 in Burkholderia phytofirmans PsJN

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS12840 pyruvate dehydrogenase 1.0 BPHYT_RS16840 transketolase 0.66 14
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_00466 pyruvate dehydrogenase E1 component 0.95 H281DRAFT_06314 transketolase
Paraburkholderia graminis OAS925 0.97 ABIE53_002793 pyruvate dehydrogenase E1 component 0.95 ABIE53_003537 transketolase
Paraburkholderia sabiae LMG 24235 0.92 QEN71_RS05725 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.90 QEN71_RS27010 transketolase
Ralstonia sp. UNC404CL21Col 0.82 ABZR87_RS13470 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.69 ABZR87_RS01440 transketolase
Cupriavidus basilensis FW507-4G11 0.82 RR42_RS07365 pyruvate dehydrogenase 0.69 RR42_RS17575 transketolase
Ralstonia solanacearum PSI07 0.81 RPSI07_RS15815 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.68 RPSI07_RS11430 transketolase
Ralstonia solanacearum UW163 0.81 UW163_RS14980 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.68 UW163_RS07755 transketolase
Ralstonia solanacearum IBSBF1503 0.81 RALBFv3_RS01670 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.68 RALBFv3_RS05870 transketolase
Ralstonia solanacearum GMI1000 0.81 RS_RS08055 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.68 RS_RS13760 transketolase
Dechlorosoma suillum PS 0.74 Dsui_1578 pyruvate dehydrogenase E1 component, homodimeric type 0.63 Dsui_1561 transketolase
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_2144 pyruvate dehydrogenase E1 component, homodimeric type 0.62 B158DRAFT_0510 transketolase, bacterial and yeast
Herbaspirillum seropedicae SmR1 0.66 HSERO_RS07305 pyruvate dehydrogenase 0.71 HSERO_RS07115 transketolase
Pseudomonas fluorescens FW300-N2E2 0.65 Pf6N2E2_3674 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.62 Pf6N2E2_4655 Transketolase (EC 2.2.1.1)
Pseudomonas fluorescens FW300-N2C3 0.64 AO356_08960 pyruvate dehydrogenase 0.62 AO356_13680 transketolase
Pseudomonas fluorescens GW456-L13 0.64 PfGW456L13_214 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.59 PfGW456L13_1064 Transketolase (EC 2.2.1.1)
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_1476 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.62 Pf1N1B4_2397 Transketolase (EC 2.2.1.1)
Pseudomonas sp. RS175 0.64 PFR28_05061 Pyruvate dehydrogenase E1 component 0.62 PFR28_04188 Transketolase 1
Pseudomonas putida KT2440 0.64 PP_0339 Pyruvate dehydrogenase E1 component 0.63 PP_4965 transketolase A
Pseudomonas sp. S08-1 0.64 OH686_09710 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 OH686_10770 transketolase
Pseudomonas fluorescens SBW25 0.64 PFLU_RS02275 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 PFLU_RS28095 transketolase
Pseudomonas fluorescens SBW25-INTG 0.64 PFLU_RS02275 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 PFLU_RS28095 transketolase
Pseudomonas fluorescens FW300-N2E3 0.64 AO353_12865 pyruvate dehydrogenase 0.62 AO353_07955 transketolase
Pseudomonas simiae WCS417 0.64 PS417_02220 pyruvate dehydrogenase 0.62 PS417_26440 transketolase
Pseudomonas syringae pv. syringae B728a ΔmexB 0.63 Psyr_0518 2-oxo-acid dehydrogenase E1 component homodimeric type 0.63 Psyr_4792 transketolase
Pseudomonas syringae pv. syringae B728a 0.63 Psyr_0518 2-oxo-acid dehydrogenase E1 component homodimeric type 0.63 Psyr_4792 transketolase
Alteromonas macleodii MIT1002 0.63 MIT1002_03003 Pyruvate dehydrogenase E1 component 0.64 MIT1002_00861 Transketolase 1
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS12410 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.61 ABZR86_RS18655 transketolase low > 74
Castellaniella sp019104865 MT123 0.62 ABCV34_RS04160 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.66 ABCV34_RS15450 transketolase
Marinobacter adhaerens HP15 0.62 HP15_3046 pyruvate dehydrogenase subunit E1 0.61 HP15_2913 bacterial transketolase
Acidovorax sp. GW101-3H11 0.62 Ac3H11_4093 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.63 Ac3H11_649 Transketolase (EC 2.2.1.1)
Hydrogenophaga sp. GW460-11-11-14-LB1 0.62 GFF4890 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.62 GFF2487 Transketolase (EC 2.2.1.1)
Pseudomonas stutzeri RCH2 0.62 Psest_0448 pyruvate dehydrogenase E1 component, homodimeric type 0.65 Psest_0328 transketolase, bacterial and yeast
Variovorax sp. SCN45 0.62 GFF967 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.60 GFF7176 Transketolase (EC 2.2.1.1)
Lysobacter sp. OAE881 0.61 ABIE51_RS18795 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.61 ABIE51_RS17120 transketolase
Shewanella loihica PV-4 0.61 Shew_3431 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.64 Shew_0752 transketolase (RefSeq)
Shewanella sp. ANA-3 0.60 Shewana3_0426 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.64 Shewana3_3353 transketolase (RefSeq)
Xanthomonas campestris pv. campestris strain 8004 0.60 Xcc-8004.754.1 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.59 Xcc-8004.1180.1 Transketolase (EC 2.2.1.1)
Shewanella oneidensis MR-1 0.60 SO0424 aceE pyruvate dehydrogenase complex, E1 component, pyruvate dehydrogenase (NCBI ptt file) 0.64 SO0930 tkt transketolase (NCBI ptt file)
Rhodanobacter sp. FW510-T8 0.59 OKGIIK_12700 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.60 OKGIIK_01095 tkt transketolase low > 52
Escherichia coli ECRC100 0.58 OKFHMN_10500 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 OKFHMN_19325 tkt transketolase
Escherichia coli ECRC99 0.58 KEDOAH_17655 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 KEDOAH_08815 tkt transketolase
Escherichia coli ECOR27 0.58 NOLOHH_02845 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 NOLOHH_11230 tkt transketolase low > 75
Escherichia coli ECRC98 0.58 JDDGAC_14095 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 JDDGAC_22955 tkt transketolase
Escherichia coli ECRC102 0.58 NIAGMN_08350 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 NIAGMN_17090 tkt transketolase
Escherichia coli ECRC62 0.58 BNILDI_08765 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 BNILDI_09775 tkt transketolase low > 75
Escherichia coli BW25113 0.58 b0114 aceE pyruvate dehydrogenase subunit E1 (NCBI) 0.65 b2935 tktA transketolase 1, thiamin-binding (NCBI) 0.42 44
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_03547 Pyruvate dehydrogenase E1 component 0.65 OHPLBJKB_00781 Transketolase 1
Escherichia coli BL21 0.58 ECD_00113 pyruvate dehydrogenase, decarboxylase component E1, thiamine triphosphate-binding 0.65 ECD_02765 transketolase 1, thiamine triphosphate-binding
Escherichia coli Nissle 1917 0.58 ECOLIN_RS00640 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 ECOLIN_RS16330 transketolase 0.68 55
Escherichia coli ECRC101 0.58 MCAODC_01015 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 MCAODC_09845 tkt transketolase
Escherichia fergusonii Becca 0.58 EFB2_03931 Pyruvate dehydrogenase E1 component 0.65 EFB2_00966 Transketolase 1 low > 86
Escherichia coli ECOR38 0.58 HEPCGN_08480 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 HEPCGN_18630 tkt transketolase low > 87
Pectobacterium carotovorum WPP14 0.58 HER17_RS03290 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 HER17_RS02680 transketolase
Klebsiella michiganensis M5al 0.58 BWI76_RS04880 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.64 BWI76_RS24015 transketolase
Dickeya dadantii 3937 0.58 DDA3937_RS17925 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.64 DDA3937_RS18525 transketolase
Dickeya dianthicola 67-19 0.58 HGI48_RS17850 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 HGI48_RS18450 transketolase
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS11175 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.62 LRK54_RS05750 transketolase
Rhodanobacter denitrificans MT42 0.58 LRK55_RS10880 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.61 LRK55_RS05505 transketolase low > 63
Dickeya dianthicola ME23 0.58 DZA65_RS19000 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 DZA65_RS19585 transketolase
Acinetobacter radioresistens SK82 0.58 MPMX26_02925 Pyruvate dehydrogenase E1 component 0.60 MPMX26_01775 Transketolase 1
Pantoea sp. MT58 0.58 IAI47_15810 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.64 IAI47_03680 transketolase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF122 Pyruvate dehydrogenase E1 component (EC 1.2.4.1) 0.64 GFF3028 Transketolase (EC 2.2.1.1) low > 78
Enterobacter sp. TBS_079 0.58 MPMX20_00807 Pyruvate dehydrogenase E1 component 0.64 MPMX20_03780 Transketolase 1 0.41 71
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3710 pyruvate dehydrogenase E1 component, homodimeric type 0.63 EX28DRAFT_2974 transketolase, bacterial and yeast low > 76
Shewanella amazonensis SB2B 0.57 Sama_0375 aceE pyruvate dehydrogenase subunit E1 (RefSeq) 0.63 Sama_2759 transketolase (RefSeq)
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_12220 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.65 CSW01_17330 transketolase
Erwinia tracheiphila SCR3 0.57 LU632_RS03080 aceE pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 LU632_RS05520 tkt transketolase
Rahnella sp. WP5 0.57 EX31_RS03480 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 EX31_RS20285 transketolase low > 89
Serratia liquefaciens MT49 0.57 IAI46_21325 pyruvate dehydrogenase (acetyl-transferring), homodimeric type 0.63 IAI46_21045 transketolase
Azospirillum sp. SherDot2 0.09 MPMX19_03172 Pyruvate dehydrogenase E1 component 0.58 MPMX19_02942 Transketolase 1 low > 112

Not shown: 6 genomes with orthologs for BPHYT_RS12840 only; 16 genomes with orthologs for BPHYT_RS16840 only