Conservation of cofitness between BPHYT_RS16440 and BPHYT_RS15940 in Burkholderia phytofirmans PsJN

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Burkholderia phytofirmans PsJN 1.0 BPHYT_RS16440 hemolysin D 1.0 BPHYT_RS15940 membrane protein 0.20 19
Paraburkholderia graminis OAS925 0.97 ABIE53_003461 hemolysin III 0.94 ABIE53_003359 Cys-tRNA(Pro) deacylase low > 113
Paraburkholderia bryophila 376MFSha3.1 0.97 H281DRAFT_04221 hemolysin III 0.96 H281DRAFT_04124 Cys-tRNA(Pro) deacylase low > 103
Paraburkholderia sabiae LMG 24235 0.94 QEN71_RS02270 hemolysin III family protein 0.90 QEN71_RS02765 Cys-tRNA(Pro) deacylase low > 153
Ralstonia sp. UNC404CL21Col 0.62 ABZR87_RS02015 hemolysin III family protein 0.79 ABZR87_RS00800 Cys-tRNA(Pro) deacylase low > 80
Acidovorax sp. GW101-3H11 0.62 Ac3H11_4296 COG1272: Predicted membrane protein hemolysin III homolog 0.69 Ac3H11_2624 Transcriptional regulator low > 79
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS36990 hemolysin III 0.78 RR42_RS03340 membrane protein low > 128
Pseudomonas putida KT2440 0.61 PP_4986 Channel protein, hemolysin III family 0.24 PP_1077 Cys-tRNAPro deacylase low > 96
Pseudomonas fluorescens GW456-L13 0.59 PfGW456L13_1038 COG1272: Predicted membrane protein hemolysin III homolog 0.25 PfGW456L13_1736 Cys-tRNA(Pro) deacylase YbaK low > 87
Pseudomonas fluorescens FW300-N2E3 0.59 AO353_08075 hemolysin III 0.24 AO353_04170 hypothetical protein low > 101
Pseudomonas sp. RS175 0.59 PFR28_04213 hypothetical protein 0.24 PFR28_03366 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 88
Pseudomonas fluorescens FW300-N2E2 0.59 Pf6N2E2_4629 COG1272: Predicted membrane protein hemolysin III homolog 0.25 Pf6N2E2_5576 Cys-tRNA(Pro) deacylase YbaK low > 103
Pseudomonas fluorescens FW300-N2C3 0.59 AO356_13560 hemolysin III 0.25 AO356_18260 hypothetical protein low > 104
Pseudomonas stutzeri RCH2 0.59 Psest_3779 channel protein, hemolysin III family 0.25 Psest_1454 ybaK/ebsC protein low > 67
Pseudomonas simiae WCS417 0.58 PS417_26570 hemolysin III 0.23 PS417_05585 hypothetical protein low > 88
Pseudomonas fluorescens SBW25 0.58 PFLU_RS28225 hemolysin III family protein 0.23 PFLU_RS05670 Cys-tRNA(Pro) deacylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.58 PFLU_RS28225 hemolysin III family protein 0.23 PFLU_RS05670 Cys-tRNA(Pro) deacylase low > 109
Pseudomonas syringae pv. syringae B728a 0.58 Psyr_0452 HylII 0.25 Psyr_3903 Conserved hypothetical protein 11 low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.58 Psyr_0452 HylII 0.25 Psyr_3903 Conserved hypothetical protein 11 low > 86
Pseudomonas fluorescens FW300-N1B4 0.58 Pf1N1B4_2371 COG1272: Predicted membrane protein hemolysin III homolog 0.25 Pf1N1B4_765 Cys-tRNA(Pro) deacylase YbaK low > 87
Pseudomonas sp. S08-1 0.57 OH686_06045 Predicted membrane protein, hemolysin III-related 0.22 OH686_20370 Cys-tRNA(Pro) deacylase YbaK low > 80
Xanthomonas campestris pv. campestris strain 8004 0.47 Xcc-8004.1589.1 COG1272: Predicted membrane protein hemolysin III homolog 0.27 Xcc-8004.4192.1 Cys-tRNA(Pro) deacylase YbaK low > 74
Marinobacter adhaerens HP15 0.43 HP15_2974 channel protein, hemolysin III family 0.22 HP15_3802 conserved hypothetical protein CHP00011 low > 73
Variovorax sp. OAS795 0.43 ABID97_RS07605 hemolysin III family protein 0.71 ABID97_RS21705 aminoacyl-tRNA deacylase low > 91
Pantoea sp. MT58 0.41 IAI47_03795 hemolysin III family protein 0.29 IAI47_14410 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 76
Serratia liquefaciens MT49 0.41 IAI46_20775 hemolysin III family protein 0.28 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Klebsiella michiganensis M5al 0.40 BWI76_RS23840 hemolysin III family protein 0.27 BWI76_RS06870 aminoacyl-tRNA deacylase low > 92
Variovorax sp. SCN45 0.40 GFF5671 FIG01964566: Predicted membrane protein, hemolysin III homolog 0.72 GFF3103 Cys-tRNA(Pro) deacylase YbaK low > 127
Enterobacter sp. TBS_079 0.40 MPMX20_03758 hypothetical protein 0.26 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 85
Enterobacter asburiae PDN3 0.40 EX28DRAFT_2950 channel protein, hemolysin III family 0.27 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase low > 76
Escherichia fergusonii Becca 0.40 EFB2_01002 hypothetical protein 0.26 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Escherichia coli ECOR38 0.40 HEPCGN_18835 yqfA hemolysin III family protein 0.26 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 87
Escherichia coli ECRC62 0.40 BNILDI_10000 yqfA hemolysin III family protein 0.26 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Escherichia coli ECRC101 0.40 MCAODC_10065 yqfA hemolysin III family protein 0.25 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.40 55
Escherichia coli ECOR27 0.40 NOLOHH_11465 yqfA hemolysin III family protein 0.26 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Escherichia coli ECRC102 0.40 NIAGMN_17310 yqfA hemolysin III family protein 0.25 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Escherichia coli BW25113 0.40 b2899 yqfA predicted oxidoreductase, inner membrane subunit (NCBI) 0.26 b0481 ybaK hypothetical protein (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.40 OHPLBJKB_00816 hypothetical protein 0.26 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 73
Rahnella sp. WP5 0.40 EX31_RS21610 hemolysin III family protein 0.26 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 89
Escherichia coli ECRC98 0.40 JDDGAC_23185 yqfA hemolysin III family protein 0.25 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 86
Escherichia coli BL21 0.40 ECD_02731 hemolysin III family HylIII inner membrane protein 0.26 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase low > 61
Escherichia coli ECRC100 0.40 OKFHMN_19545 yqfA hemolysin III family protein 0.25 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 80
Escherichia coli Nissle 1917 0.40 ECOLIN_RS16150 hemolysin III family protein 0.26 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Escherichia coli ECRC99 0.40 KEDOAH_08595 yqfA hemolysin III family protein 0.25 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Desulfovibrio vulgaris Miyazaki F 0.39 DvMF_2247 channel protein, hemolysin III family (RefSeq) 0.22 DvMF_2065 ybaK/ebsC protein (RefSeq) — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.39 GFF2997 COG1272: Predicted membrane protein hemolysin III homolog 0.25 GFF4401 Cys-tRNA(Pro) deacylase YbaK low > 78
Dickeya dadantii 3937 0.38 DDA3937_RS03270 hemolysin III family protein 0.24 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 74
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00205 hemolysin III family protein 0.20 CSW01_10815 Cys-tRNA(Pro) deacylase low > 62
Dickeya dianthicola ME23 0.36 DZA65_RS03455 hemolysin III family protein 0.22 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Parabacteroides merdae CL09T00C40 0.36 HMPREF1078_RS01905 hemolysin III family protein 0.19 HMPREF1078_RS02420 Cys-tRNA(Pro) deacylase low > 61
Alteromonas macleodii MIT1002 0.36 MIT1002_00886 hemolysin 0.20 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 70
Dickeya dianthicola 67-19 0.35 HGI48_RS03410 hemolysin III family protein 0.22 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 71
Pectobacterium carotovorum WPP14 0.35 HER17_RS17935 hemolysin III family protein 0.26 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 75
Shewanella loihica PV-4 0.31 Shew_2098 hemolysin III family channel protein (RefSeq) 0.23 Shew_0016 ybaK/ebsC protein (RefSeq) — —
Acinetobacter radioresistens SK82 0.30 MPMX26_00606 hypothetical protein 0.26 MPMX26_01615 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK — —
Shewanella amazonensis SB2B 0.29 Sama_1862 hemolysin III family channel protein (RefSeq) 0.23 Sama_0531 YbaK/EbsC protein (RefSeq) low > 62
Shewanella sp. ANA-3 0.28 Shewana3_1934 hemolysin III family channel protein (RefSeq) 0.25 Shewana3_0957 ybaK/ebsC protein (RefSeq) low > 73
Bacteroides ovatus ATCC 8483 0.28 BACOVA_00687 hypothetical protein 0.19 BACOVA_03702 YbaK/EbsC protein low > 94
Shewanella oneidensis MR-1 0.27 SO2447 channel protein, hemolysin III family subfamily (NCBI ptt file) 0.24 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) low > 76
Bacteroides thetaiotaomicron VPI-5482 0.27 BT1983 hemolysin III (NCBI ptt file) 0.18 BT0579 putative transcription regulator (NCBI ptt file) — —
Sinorhizobium meliloti 1021 0.26 SMc00455 hypothetical protein 0.28 SMc00385 hypothetical protein low > 103
Azospirillum brasilense Sp245 0.25 AZOBR_RS18955 DNA-binding protein 0.19 AZOBR_RS00470 hypothetical protein low > 97
Rhodopseudomonas palustris CGA009 0.25 TX73_008140 hemolysin III family protein 0.28 TX73_022270 Cys-tRNA(Pro) deacylase low > 86
Azospirillum sp. SherDot2 0.24 MPMX19_02364 hypothetical protein 0.21 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK low > 112
Phocaeicola vulgatus CL09T03C04 0.24 HMPREF1058_RS00565 hemolysin III family protein 0.17 HMPREF1058_RS01730 Cys-tRNA(Pro) deacylase low > 67
Agrobacterium fabrum C58 0.24 Atu0906 Hemolysin III 0.30 Atu0275 hypothetical protein — —
Phocaeicola dorei CL03T12C01 0.24 ABI39_RS08185 hemolysin III family protein 0.18 ABI39_RS15335 Cys-tRNA(Pro) deacylase low > 72
Fusobacterium nucleatum SB010 0.23 HUW76_01725 hemolysin III family protein 0.15 HUW76_08580 Cys-tRNA(Pro) deacylase low > 35
Caulobacter crescentus NA1000 0.23 CCNA_03601 hemolysin III-related membrane protein 0.27 CCNA_01014 cysteinyl-tRNA(Pro) deacylase low > 66
Caulobacter crescentus NA1000 Δfur 0.23 CCNA_03601 hemolysin III-related membrane protein 0.27 CCNA_01014 cysteinyl-tRNA(Pro) deacylase low > 67
Bacteroides stercoris CC31F 0.23 HMPREF1181_RS16820 hemolysin III family protein 0.21 HMPREF1181_RS15180 Cys-tRNA(Pro) deacylase low > 56
Rhizobium sp. OAE497 0.23 ABIE40_RS04960 hemolysin III family protein 0.30 ABIE40_RS01230 Cys-tRNA(Pro) deacylase low > 107
Rhodospirillum rubrum S1H 0.22 Rru_A0661 Hly-III related proteins (NCBI) 0.23 Rru_A3668 hypothetical protein (NCBI) low > 58

Not shown: 9 genomes with orthologs for BPHYT_RS16440 only; 12 genomes with orthologs for BPHYT_RS15940 only