Conservation of cofitness between Atu1364 and Atu1470 in Agrobacterium fabrum C58

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Agrobacterium fabrum C58 1.0 Atu1364 ATP-dependent Clp protease, ATP-binding subunit 1.0 Atu1470 Camphor resistance protein 0.49 15
Rhizobium sp. OAE497 0.86 ABIE40_RS08865 ATP-dependent Clp protease ATP-binding subunit ClpA 0.65 ABIE40_RS09920 fluoride efflux transporter CrcB low > 107
Sinorhizobium meliloti 1021 0.82 SMc02109 ATP-dependent Clp protease ATP-binding subunit protein 0.61 SMc01274 camphor resistance protein CrcB — —
Rhodopseudomonas palustris CGA009 0.70 TX73_016270 ATP-dependent Clp protease ATP-binding subunit ClpA 0.47 TX73_008715 fluoride efflux transporter CrcB low > 86
Bosea sp. OAE506 0.69 ABIE41_RS18235 ATP-dependent Clp protease ATP-binding subunit ClpA 0.43 ABIE41_RS14705 fluoride efflux transporter CrcB low > 77
Azospirillum sp. SherDot2 0.67 MPMX19_00503 ATP-dependent Clp protease ATP-binding subunit ClpA 0.38 MPMX19_01719 Putative fluoride ion transporter CrcB low > 112
Azospirillum brasilense Sp245 0.67 AZOBR_RS05175 ATP-dependent Clp protease ATP-binding protein 0.42 AZOBR_RS06900 camphor resistance protein CrcB low > 97
Caulobacter crescentus NA1000 0.67 CCNA_02553 ATP-dependent clp protease ATP-binding subunit ClpA 0.50 CCNA_02060 CrcB family protein low > 66
Caulobacter crescentus NA1000 Δfur 0.67 CCNA_02553 ATP-dependent clp protease ATP-binding subunit ClpA 0.50 CCNA_02060 CrcB family protein low > 67
Magnetospirillum magneticum AMB-1 0.66 AMB_RS05705 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 AMB_RS17225 fluoride efflux transporter CrcB — —
Rhodospirillum rubrum S1H 0.66 Rru_A2109 ATP-dependent Clp protease ATP-binding subunit ClpA (NCBI) 0.30 Rru_A0236 Camphor resistance CrcB protein (NCBI) low > 58
Brevundimonas sp. GW460-12-10-14-LB2 0.65 A4249_RS08390 ATP-dependent Clp protease ATP-binding subunit ClpA 0.45 A4249_RS07870 fluoride efflux transporter CrcB low > 48
Dinoroseobacter shibae DFL-12 0.64 Dshi_2939 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) 0.39 Dshi_0314 Camphor resistance CrcB protein (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.64 PGA1_c25150 ATP-dependent Clp protease ATP-binding subunit 0.40 PGA1_c01940 crcB-like protein low > 62
Sphingomonas koreensis DSMZ 15582 0.63 Ga0059261_1001 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.33 Ga0059261_1032 protein CrcB low > 68
Dyella japonica UNC79MFTsu3.2 0.54 ABZR86_RS02200 ATP-dependent Clp protease ATP-binding subunit ClpA 0.30 ABZR86_RS21375 fluoride efflux transporter CrcB low > 74
Dechlorosoma suillum PS 0.54 Dsui_0009 ATP-dependent Clp protease ATP-binding subunit clpA 0.21 Dsui_1367 crcB protein low > 51
Herbaspirillum seropedicae SmR1 0.54 HSERO_RS07030 ATP-dependent Clp protease ATP-binding protein 0.31 HSERO_RS10540 camphor resistance protein CrcB — —
Marinobacter adhaerens HP15 0.53 HP15_2080 ATP-dependent Clp protease ATP-binding subunit ClpA 0.28 HP15_3374 protein CrcB-like protein low > 73
Burkholderia phytofirmans PsJN 0.53 BPHYT_RS15710 ATP-dependent Clp protease ATP-binding protein 0.30 BPHYT_RS07905 camphor resistance protein CrcB — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS00420 ATP-dependent Clp protease ATP-binding subunit ClpA 0.27 LRK54_RS14415 fluoride efflux transporter CrcB low > 59
Rhodanobacter denitrificans MT42 0.53 LRK55_RS00160 ATP-dependent Clp protease ATP-binding subunit ClpA 0.26 LRK55_RS14130 fluoride efflux transporter CrcB low > 63
Lysobacter sp. OAE881 0.53 ABIE51_RS11490 ATP-dependent Clp protease ATP-binding subunit ClpA 0.28 ABIE51_RS00900 fluoride efflux transporter CrcB low > 62
Pseudomonas sp. RS175 0.53 PFR28_02613 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 PFR28_02605 Putative fluoride ion transporter CrcB low > 88
Escherichia coli ECOR27 0.53 NOLOHH_22180 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 NOLOHH_23790 crcB fluoride efflux transporter CrcB — —
Escherichia coli ECRC98 0.53 JDDGAC_09420 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 JDDGAC_11060 crcB fluoride efflux transporter CrcB — —
Escherichia coli ECRC102 0.53 NIAGMN_03825 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 NIAGMN_05470 crcB fluoride efflux transporter CrcB — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS04695 ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 ECOLIN_RS03405 fluoride efflux transporter CrcB — —
Escherichia coli BW25113 0.53 b0882 clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) 0.25 b0624 crcB camphor resistance protein CrcB (NCBI) low > 76
Escherichia coli ECOR38 0.53 HEPCGN_22900 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 HEPCGN_00860 crcB fluoride efflux transporter CrcB low > 85
Escherichia fergusonii Becca 0.53 EFB2_03179 ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 EFB2_03467 Putative fluoride ion transporter CrcB low > 86
Escherichia coli ECRC101 0.53 MCAODC_25000 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 MCAODC_26630 crcB fluoride efflux transporter CrcB — —
Escherichia coli ECRC99 0.53 KEDOAH_22125 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 KEDOAH_20555 crcB fluoride efflux transporter CrcB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_02786 ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 OHPLBJKB_03081 Putative fluoride ion transporter CrcB low > 73
Escherichia coli ECRC101 0.53 OKFHMN_05785 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 OKFHMN_07415 crcB fluoride efflux transporter CrcB — —
Escherichia coli ECRC62 0.53 BNILDI_20435 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 BNILDI_21800 crcB fluoride efflux transporter CrcB — —
Pseudomonas simiae WCS417 0.53 PS417_16510 Clp protease ClpX 0.28 PS417_16475 camphor resistance protein CrcB low > 88
Kangiella aquimarina DSM 16071 0.53 B158DRAFT_1505 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.26 B158DRAFT_1818 protein CrcB low > 40
Pseudomonas stutzeri RCH2 0.53 Psest_2027 ATP-dependent Clp protease ATP-binding subunit clpA 0.34 Psest_2035 crcB protein low > 67
Klebsiella michiganensis M5al 0.53 BWI76_RS09615 ATP-dependent Clp protease ATP-binding subunit ClpA 0.22 BWI76_RS07985 fluoride ion transporter CrcB low > 92
Ralstonia solanacearum PSI07 0.53 RPSI07_RS12575 ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 RPSI07_RS17460 fluoride efflux transporter CrcB — —
Escherichia coli BL21 0.53 ECD_00887 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity 0.25 ECD_00594 fluoride efflux channel, dual topology membrane protein low > 60
Pseudomonas syringae pv. syringae B728a ΔmexB 0.52 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA 0.30 Psyr_3176 camphor resistance protein CrcB — —
Paraburkholderia sabiae LMG 24235 0.52 QEN71_RS03005 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 QEN71_RS23260 fluoride efflux transporter CrcB low > 153
Enterobacter sp. TBS_079 0.52 MPMX20_01544 ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 MPMX20_01284 Putative fluoride ion transporter CrcB low > 85
Vibrio cholerae E7946 ATCC 55056 0.52 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 CSW01_00330 fluoride efflux transporter CrcB low > 62
Pseudomonas syringae pv. syringae B728a 0.52 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA 0.30 Psyr_3176 camphor resistance protein CrcB low > 86
Enterobacter asburiae PDN3 0.52 EX28DRAFT_2050 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) 0.25 EX28DRAFT_2338 protein CrcB low > 76
Acidovorax sp. GW101-3H11 0.52 Ac3H11_2456 ATP-dependent Clp protease ATP-binding subunit ClpA 0.29 Ac3H11_2593 Protein crcB homolog low > 79
Pseudomonas fluorescens GW456-L13 0.52 PfGW456L13_2646 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 PfGW456L13_2654 CrcB protein low > 87
Pseudomonas putida KT2440 0.52 PP_4008 ATP-dependent serine protease 0.35 PP_4001 Putative fluoride ion transporter CrcB low > 96
Pseudomonas fluorescens SBW25-INTG 0.52 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA 0.29 PFLU_RS18515 fluoride efflux transporter CrcB low > 109
Pseudomonas fluorescens SBW25 0.52 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA 0.29 PFLU_RS18515 fluoride efflux transporter CrcB low > 109
Pseudomonas fluorescens FW300-N2C3 0.52 AO356_22150 ATP-dependent Clp protease ATP-binding subunit ClpA 0.32 AO356_22190 camphor resistance protein CrcB low > 104
Pseudomonas sp. S08-1 0.52 OH686_00235 ATP-dependent Clp protease ATP-binding subunit ClpA 0.32 OH686_00275 Fluoride ion transporter CrcB low > 80
Pseudomonas fluorescens FW300-N2E3 0.52 AO353_27675 ATP-dependent Clp protease ATP-binding subunit ClpA 0.32 AO353_27635 camphor resistance protein CrcB low > 101
Pseudomonas fluorescens FW300-N2E2 0.52 Pf6N2E2_292 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 Pf6N2E2_300 CrcB protein low > 103
Pseudomonas fluorescens FW300-N1B4 0.52 Pf1N1B4_4055 ATP-dependent Clp protease ATP-binding subunit ClpA 0.31 Pf1N1B4_4063 CrcB protein low > 87
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4521 ATP-dependent Clp protease ATP-binding subunit ClpA 0.25 GFF5356 Protein crcB homolog low > 90
Variovorax sp. OAS795 0.52 ABID97_RS16910 ATP-dependent Clp protease ATP-binding subunit ClpA 0.27 ABID97_RS09460 fluoride efflux transporter CrcB — —
Acinetobacter radioresistens SK82 0.52 MPMX26_01284 ATP-dependent Clp protease ATP-binding subunit ClpA 0.34 MPMX26_00303 Putative fluoride ion transporter CrcB low > 36
Shewanella sp. ANA-3 0.52 Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) 0.34 Shewana3_2053 camphor resistance protein CrcB (RefSeq) — —
Shewanella amazonensis SB2B 0.52 Sama_2056 ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) 0.34 Sama_1775 crcB protein (RefSeq) low > 62
Pantoea sp. MT58 0.51 IAI47_12945 ATP-dependent Clp protease ATP-binding subunit ClpA 0.27 IAI47_01170 fluoride efflux transporter CrcB low > 76
Shewanella oneidensis MR-1 0.51 SO2626 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) 0.34 SO2309 crcB crcB protein (NCBI ptt file) — —
Erwinia tracheiphila SCR3 0.51 LU632_RS09705 clpA ATP-dependent Clp protease ATP-binding subunit ClpA 0.29 LU632_RS01320 crcB fluoride efflux transporter CrcB low > 74
Desulfovibrio vulgaris Hildenborough JW710 0.45 DVU1602 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (TIGR) 0.33 DVU1599 crcB crcB protein (TIGR) low > 55
Phocaeicola vulgatus CL09T03C04 0.34 HMPREF1058_RS09040 AAA family ATPase 0.36 HMPREF1058_RS04670 fluoride efflux transporter CrcB low > 67
Phocaeicola dorei CL03T12C01 0.34 ABI39_RS03345 AAA family ATPase 0.36 ABI39_RS19010 fluoride efflux transporter CrcB low > 72

Not shown: 20 genomes with orthologs for Atu1364 only; 7 genomes with orthologs for Atu1470 only