Conservation of cofitness between AO356_07100 and AO356_20125 in Pseudomonas fluorescens FW300-N2C3

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2C3 1.0 AO356_07100 carbon-nitrogen hydrolase 1.0 AO356_20125 23S rRNA pseudouridylate synthase 0.45 1
Pseudomonas fluorescens FW300-N2E2 0.98 Pf6N2E2_3281 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 1.00 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.25 16
Pseudomonas sp. RS175 0.97 PFR28_00160 Deaminated glutathione amidase 0.97 PFR28_03018 Ribosomal large subunit pseudouridine synthase C low > 88
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_5027 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.90 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 87
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1093 FIG003879: Predicted amidohydrolase / Omega amidase (Nit2 homolog) 0.93 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) — —
Pseudomonas fluorescens SBW25-INTG 0.90 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.93 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens SBW25 0.90 PFLU_RS04335 carbon-nitrogen hydrolase family protein 0.93 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 109
Pseudomonas fluorescens FW300-N2E3 0.89 AO353_05220 carbon-nitrogen hydrolase 0.93 AO353_01405 23S rRNA pseudouridylate synthase 0.42 16
Pseudomonas simiae WCS417 0.88 PS417_04280 carbon-nitrogen hydrolase 0.94 PS417_21480 23S rRNA pseudouridylate synthase low > 88
Pseudomonas syringae pv. syringae B728a ΔmexB 0.83 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.91 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas syringae pv. syringae B728a 0.83 Psyr_4157 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.91 Psyr_1639 ribosomal large subunit pseudouridine synthase C low > 86
Pseudomonas putida KT2440 0.82 PP_0939 Carbon-nitrogen hydrolase family protein 0.89 PP_1906 ribosomal large subunit pseudouridine synthase C low > 96
Pseudomonas sp. S08-1 0.78 OH686_08585 Uncharacterized subgroup of the nitrilase superfamily 0.84 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase low > 80
Pseudomonas stutzeri RCH2 0.69 Psest_3321 Predicted amidohydrolase 0.84 Psest_1680 pseudouridine synthase, RluA family — —
Marinobacter adhaerens HP15 0.45 HP15_2449 nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase 0.51 HP15_2221 pseudouridine synthase, RluA family low > 73
Serratia liquefaciens MT49 0.43 IAI46_22690 carbon-nitrogen hydrolase family protein 0.55 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Variovorax sp. OAS795 0.42 ABID97_RS02000 carbon-nitrogen hydrolase family protein 0.40 ABID97_RS08250 RluA family pseudouridine synthase low > 91
Variovorax sp. SCN45 0.41 GFF5445 FIG003879: Uncharacterized subgroup of the nitrilase superfamily 0.41 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) low > 127
Vibrio cholerae E7946 ATCC 55056 0.41 CSW01_02215 carbon-nitrogen hydrolase family protein 0.49 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 62
Cupriavidus basilensis FW507-4G11 0.40 RR42_RS05880 acyltransferase 0.44 RR42_RS14155 pseudouridine synthase low > 128
Paraburkholderia sabiae LMG 24235 0.40 QEN71_RS26550 carbon-nitrogen hydrolase family protein 0.45 QEN71_RS04500 RluA family pseudouridine synthase low > 153
Shewanella sp. ANA-3 0.40 Shewana3_3642 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.53 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) low > 73
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_04689 nitrilase 0.45 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase low > 103
Paraburkholderia graminis OAS925 0.39 ABIE53_000852 putative amidohydrolase 0.46 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase low > 113
Burkholderia phytofirmans PsJN 0.39 BPHYT_RS03545 apolipoprotein acyltransferase 0.44 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C low > 109
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF2535 FIG003879: Predicted amidohydrolase 0.40 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 90
Shewanella amazonensis SB2B 0.38 Sama_0473 carbon-nitrogen family hydrolase (RefSeq) 0.56 Sama_1988 pseudouridylate synthase (RefSeq) low > 62
Acidovorax sp. GW101-3H11 0.38 Ac3H11_1207 FIG003879: Predicted amidohydrolase 0.41 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 79
Ralstonia solanacearum GMI1000 0.38 RS_RS13310 carbon-nitrogen hydrolase family protein 0.44 RS_RS05155 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum PSI07 0.38 RPSI07_RS11855 carbon-nitrogen hydrolase family protein 0.44 RPSI07_RS19085 RluA family pseudouridine synthase low > 81
Herbaspirillum seropedicae SmR1 0.38 HSERO_RS07150 apolipoprotein acyltransferase 0.48 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C low > 78
Ralstonia sp. UNC404CL21Col 0.38 ABZR87_RS01100 carbon-nitrogen hydrolase family protein 0.43 ABZR87_RS10090 RluA family pseudouridine synthase low > 80
Ralstonia solanacearum IBSBF1503 0.38 RALBFv3_RS05450 carbon-nitrogen hydrolase family protein 0.43 RALBFv3_RS14375 RluA family pseudouridine synthase low > 76
Alteromonas macleodii MIT1002 0.38 MIT1002_00226 (R)-stereoselective amidase 0.54 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C low > 70
Ralstonia solanacearum UW163 0.38 UW163_RS08175 carbon-nitrogen hydrolase family protein 0.43 UW163_RS11840 RluA family pseudouridine synthase — —
Castellaniella sp019104865 MT123 0.37 ABCV34_RS02585 carbon-nitrogen hydrolase family protein 0.40 ABCV34_RS08415 RluA family pseudouridine synthase 0.54 27
Shewanella loihica PV-4 0.37 Shew_0409 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.55 Shew_1594 RluA family pseudouridine synthase (RefSeq) low > 60
Rhodospirillum rubrum S1H 0.36 Rru_A0739 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (NCBI) 0.27 Rru_A2659 Pseudouridine synthase, RluD (NCBI) — —
Dechlorosoma suillum PS 0.36 Dsui_3402 putative amidohydrolase 0.45 Dsui_2437 pseudouridine synthase, RluA family low > 51
Dinoroseobacter shibae DFL-12 0.36 Dshi_3506 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase (RefSeq) 0.24 Dshi_0315 pseudouridine synthase, RluA family (RefSeq) low > 64
Acinetobacter radioresistens SK82 0.36 MPMX26_00580 Deaminated glutathione amidase 0.42 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C low > 36
Sphingomonas koreensis DSMZ 15582 0.35 Ga0059261_3603 Predicted amidohydrolase 0.23 Ga0059261_1033 pseudouridine synthase, RluA family — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c34700 putative carbon-nitrogen hydrolase 0.25 PGA1_c01950 ribosomal large subunit pseudouridine synthase C — —
Kangiella aquimarina DSM 16071 0.34 B158DRAFT_2071 Predicted amidohydrolase 0.55 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) low > 40
Azospirillum brasilense Sp245 0.34 AZOBR_RS02920 amidohydrolase 0.23 AZOBR_RS06905 pseudouridine synthase 0.39 18
Brevundimonas sp. GW460-12-10-14-LB2 0.34 A4249_RS13565 carbon-nitrogen hydrolase family protein 0.22 A4249_RS07865 RluA family pseudouridine synthase low > 48
Azospirillum sp. SherDot2 0.33 MPMX19_02429 Deaminated glutathione amidase 0.25 MPMX19_01718 Ribosomal large subunit pseudouridine synthase C low > 112
Sinorhizobium meliloti 1021 0.31 SMc02442 hydrolase 0.27 SMc01275 ribosomal large subunit pseudouridine synthase C protein low > 103
Magnetospirillum magneticum AMB-1 0.31 AMB_RS08115 carbon-nitrogen hydrolase family protein 0.24 AMB_RS15620 RluA family pseudouridine synthase low > 64
Caulobacter crescentus NA1000 0.31 CCNA_00871 carbon-nitrogen hydrolase family protein 0.21 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 66
Caulobacter crescentus NA1000 Δfur 0.31 CCNA_00871 carbon-nitrogen hydrolase family protein 0.21 CCNA_02059 ribosomal large subunit pseudouridine synthase C low > 67
Rhizobium sp. OAE497 0.31 ABIE40_RS17345 carbon-nitrogen hydrolase family protein 0.28 ABIE40_RS09915 RluA family pseudouridine synthase low > 107
Agrobacterium fabrum C58 0.30 Atu3510 amidohydrolase 0.29 Atu1471 ribosomal large subunit pseudouridine synthase C — —
Dickeya dianthicola 67-19 0.21 HGI48_RS19475 deaminated glutathione amidase 0.54 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 71
Erwinia tracheiphila SCR3 0.20 LU632_RS16420 deaminated glutathione amidase 0.56 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Dickeya dianthicola ME23 0.19 DZA65_RS06520 deaminated glutathione amidase 0.54 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Escherichia coli ECRC62 0.19 BNILDI_21795 tatE deaminated glutathione amidase 0.55 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Pantoea sp. MT58 0.19 IAI47_14065 deaminated glutathione amidase 0.58 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 76
Klebsiella michiganensis M5al 0.19 BWI76_RS07990 carbon-nitrogen hydrolase 0.55 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.19 OHPLBJKB_03080 Deaminated glutathione amidase 0.55 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C low > 73
Escherichia coli ECRC101 0.19 MCAODC_26625 tatE deaminated glutathione amidase 0.56 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Escherichia coli ECRC100 0.19 OKFHMN_07410 tatE deaminated glutathione amidase 0.56 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 80
Escherichia coli ECOR27 0.19 NOLOHH_23785 tatE deaminated glutathione amidase 0.55 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Dickeya dadantii 3937 0.19 DDA3937_RS06130 deaminated glutathione amidase 0.55 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 74
Escherichia coli ECRC102 0.19 NIAGMN_05465 tatE deaminated glutathione amidase 0.56 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC99 0.19 KEDOAH_20560 tatE deaminated glutathione amidase 0.56 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECRC98 0.19 JDDGAC_11055 tatE deaminated glutathione amidase 0.56 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 86
Escherichia coli BL21 0.19 ECD_00595 putative NAD(P)-binding amidase-type enzyme YbeM (C-N hydrolase family) 0.55 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase low > 61
Escherichia fergusonii Becca 0.19 EFB2_03466 Deaminated glutathione amidase 0.55 EFB2_02889 Ribosomal large subunit pseudouridine synthase C low > 86
Escherichia coli Nissle 1917 0.18 ECOLIN_RS03410 deaminated glutathione amidase 0.55 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC — —
Escherichia coli ECOR38 0.18 HEPCGN_00865 tatE deaminated glutathione amidase 0.55 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 87
Enterobacter asburiae PDN3 0.18 EX28DRAFT_2337 Predicted amidohydrolase 0.56 EX28DRAFT_1844 pseudouridine synthase, RluA family low > 76
Enterobacter sp. TBS_079 0.17 MPMX20_01285 Deaminated glutathione amidase 0.55 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C low > 85
Pectobacterium carotovorum WPP14 0.16 HER17_RS17575 deaminated glutathione amidase 0.57 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.16 GFF4538 Aliphatic amidase AmiE (EC 3.5.1.4) 0.55 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) low > 78

Not shown: 4 genomes with orthologs for AO356_07100 only; 10 genomes with orthologs for AO356_20125 only