Conservation of cofitness between AO353_16875 and AO353_16310 in Pseudomonas fluorescens FW300-N2E3

72 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas fluorescens FW300-N2E3 1.0 AO353_16875 ribosomal protein S12 methylthiotransferase RimO 1.0 AO353_16310 phosphoenolpyruvate carboxylase 0.35 3
Pseudomonas fluorescens GW456-L13 0.98 PfGW456L13_4653 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.91 PfGW456L13_4740 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Pseudomonas fluorescens FW300-N1B4 0.98 Pf1N1B4_3160 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.93 Pf1N1B4_3051 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 87
Pseudomonas sp. RS175 0.97 PFR28_00486 Ribosomal protein S12 methylthiotransferase RimO 0.91 PFR28_00368 Phosphoenolpyruvate carboxylase low > 88
Pseudomonas fluorescens FW300-N2C3 0.96 AO356_05600 ribosomal protein S12 methylthiotransferase RimO 0.91 AO356_06185 phosphoenolpyruvate carboxylase low > 104
Pseudomonas fluorescens SBW25 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.90 PFLU_RS06130 phosphoenolpyruvate carboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.96 PFLU_RS05950 30S ribosomal protein S12 methylthiotransferase RimO 0.90 PFLU_RS06130 phosphoenolpyruvate carboxylase 0.14 96
Pseudomonas fluorescens FW300-N2E2 0.96 Pf6N2E2_2978 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.91 Pf6N2E2_3103 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 103
Pseudomonas simiae WCS417 0.96 PS417_05880 ribosomal protein S12 methylthiotransferase 0.90 PS417_06060 phosphoenolpyruvate carboxylase low > 88
Pseudomonas syringae pv. syringae B728a 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.85 Psyr_1318 Phosphoenolpyruvate carboxylase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.91 Psyr_1392 SSU ribosomal protein S12P methylthiotransferase 0.85 Psyr_1318 Phosphoenolpyruvate carboxylase low > 86
Pseudomonas putida KT2440 0.89 PP_1197 ribosomal protein S12 methylthiotransferase 0.82 PP_1505 Phosphoenolpyruvate carboxylase low > 96
Pseudomonas sp. S08-1 0.85 OH686_18875 ribosomal protein S12 methylthiotransferase RimO 0.74 OH686_06795 Phosphoenolpyruvate carboxylase low > 80
Pseudomonas stutzeri RCH2 0.83 Psest_2632 ribosomal protein S12 methylthiotransferase RimO 0.74 Psest_1557 Phosphoenolpyruvate carboxylase low > 67
Castellaniella sp019104865 MT123 0.77 ABCV34_RS14230 30S ribosomal protein S12 methylthiotransferase RimO 0.23 ABCV34_RS14805 phosphoenolpyruvate carboxylase low > 48
Marinobacter adhaerens HP15 0.75 HP15_2459 MiaB-like tRNA modifying enzyme YliG 0.53 HP15_795 phosphoenolpyruvate carboxylase low > 73
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.72 GFF731 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.54 GFF2342 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 78
Erwinia tracheiphila SCR3 0.72 LU632_RS09580 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.52 LU632_RS19625 ppc phosphoenolpyruvate carboxylase low > 74
Escherichia coli ECRC102 0.72 NIAGMN_04105 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 NIAGMN_11345 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli BL21 0.72 ECD_00802 ribosomal protein S12 methylthiotransferase 0.53 ECD_03841 phosphoenolpyruvate carboxylase low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.72 OHPLBJKB_02875 Ribosomal protein S12 methylthiotransferase RimO 0.53 OHPLBJKB_04094 Phosphoenolpyruvate carboxylase low > 73
Escherichia coli ECRC101 0.72 MCAODC_25275 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 MCAODC_04095 ppc phosphoenolpyruvate carboxylase low > 87
Escherichia coli ECOR38 0.72 HEPCGN_01970 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 HEPCGN_12240 ppc phosphoenolpyruvate carboxylase low > 87
Escherichia coli ECRC99 0.72 KEDOAH_21850 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 KEDOAH_14565 ppc phosphoenolpyruvate carboxylase — —
Escherichia coli ECOR27 0.72 NOLOHH_22430 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 NOLOHH_05740 ppc phosphoenolpyruvate carboxylase low > 75
Escherichia coli ECRC62 0.72 BNILDI_20690 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 BNILDI_05785 ppc phosphoenolpyruvate carboxylase low > 75
Escherichia coli BW25113 0.72 b0835 yliG predicted SAM-dependent methyltransferase (NCBI) 0.53 b3956 ppc phosphoenolpyruvate carboxylase (NCBI) low > 76
Escherichia coli ECRC98 0.72 JDDGAC_09695 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 JDDGAC_17220 ppc phosphoenolpyruvate carboxylase low > 86
Enterobacter asburiae PDN3 0.72 EX28DRAFT_2131 ribosomal protein S12 methylthiotransferase RimO 0.53 EX28DRAFT_4418 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) low > 76
Klebsiella michiganensis M5al 0.72 BWI76_RS09115 30S ribosomal protein S12 methylthiotransferase RimO 0.53 BWI76_RS00835 phosphoenolpyruvate carboxylase low > 92
Escherichia coli Nissle 1917 0.72 ECOLIN_RS04440 30S ribosomal protein S12 methylthiotransferase RimO 0.53 ECOLIN_RS22835 phosphoenolpyruvate carboxylase — —
Escherichia fergusonii Becca 0.72 EFB2_03271 Ribosomal protein S12 methylthiotransferase RimO 0.53 EFB2_04658 Phosphoenolpyruvate carboxylase low > 86
Escherichia coli ECRC100 0.72 OKFHMN_06060 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.53 OKFHMN_13595 ppc phosphoenolpyruvate carboxylase low > 80
Enterobacter sp. TBS_079 0.71 MPMX20_01473 Ribosomal protein S12 methylthiotransferase RimO 0.53 MPMX20_04524 Phosphoenolpyruvate carboxylase low > 85
Dickeya dianthicola 67-19 0.71 HGI48_RS09400 30S ribosomal protein S12 methylthiotransferase RimO 0.52 HGI48_RS00850 phosphoenolpyruvate carboxylase low > 71
Pectobacterium carotovorum WPP14 0.71 HER17_RS12755 30S ribosomal protein S12 methylthiotransferase RimO 0.53 HER17_RS20655 phosphoenolpyruvate carboxylase low > 75
Dickeya dianthicola ME23 0.70 DZA65_RS09710 30S ribosomal protein S12 methylthiotransferase RimO 0.51 DZA65_RS00895 phosphoenolpyruvate carboxylase low > 75
Dickeya dadantii 3937 0.70 DDA3937_RS09385 30S ribosomal protein S12 methylthiotransferase RimO 0.52 DDA3937_RS20360 phosphoenolpyruvate carboxylase low > 74
Azospirillum sp. SherDot2 0.70 MPMX19_05761 Ribosomal protein S12 methylthiotransferase RimO 0.26 MPMX19_06050 Phosphoenolpyruvate carboxylase 0.79 36
Vibrio cholerae E7946 ATCC 55056 0.70 CSW01_13260 30S ribosomal protein S12 methylthiotransferase RimO 0.51 CSW01_13390 phosphoenolpyruvate carboxylase low > 62
Acinetobacter radioresistens SK82 0.69 MPMX26_01294 Ribosomal protein S12 methylthiotransferase RimO 0.51 MPMX26_03013 Phosphoenolpyruvate carboxylase low > 36
Alteromonas macleodii MIT1002 0.68 MIT1002_01933 Ribosomal protein S12 methylthiotransferase RimO 0.49 MIT1002_03491 Phosphoenolpyruvate carboxylase low > 70
Ralstonia solanacearum UW163 0.65 UW163_RS14790 30S ribosomal protein S12 methylthiotransferase RimO 0.24 UW163_RS09420 phosphoenolpyruvate carboxylase — —
Lysobacter sp. OAE881 0.65 ABIE51_RS08160 30S ribosomal protein S12 methylthiotransferase RimO 0.23 ABIE51_RS18965 phosphoenolpyruvate carboxylase low > 62
Ralstonia solanacearum IBSBF1503 0.65 RALBFv3_RS01480 30S ribosomal protein S12 methylthiotransferase RimO 0.24 RALBFv3_RS04250 phosphoenolpyruvate carboxylase low > 76
Ralstonia solanacearum GMI1000 0.65 RS_RS08245 30S ribosomal protein S12 methylthiotransferase RimO 0.24 RS_RS11840 phosphoenolpyruvate carboxylase low > 80
Ralstonia solanacearum PSI07 0.65 RPSI07_RS16010 30S ribosomal protein S12 methylthiotransferase RimO 0.24 RPSI07_RS13100 phosphoenolpyruvate carboxylase low > 81
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS13275 30S ribosomal protein S12 methylthiotransferase RimO 0.24 ABZR87_RS16140 phosphoenolpyruvate carboxylase low > 80
Shewanella amazonensis SB2B 0.65 Sama_0485 MiaB-like putative RNA modifying enzyme YliG (RefSeq) 0.52 Sama_0254 phosphoenolpyruvate carboxylase (RefSeq) low > 62
Dechlorosoma suillum PS 0.65 Dsui_2540 ribosomal protein S12 methylthiotransferase RimO 0.26 Dsui_1603 phosphoenolpyruvate carboxylase — —
Rhodanobacter denitrificans FW104-10B01 0.64 LRK54_RS01780 30S ribosomal protein S12 methylthiotransferase RimO 0.25 LRK54_RS12075 phosphoenolpyruvate carboxylase low > 59
Rhodanobacter denitrificans MT42 0.64 LRK55_RS01560 30S ribosomal protein S12 methylthiotransferase RimO 0.25 LRK55_RS11810 phosphoenolpyruvate carboxylase low > 63
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS09170 ribosomal protein S12 methylthiotransferase RimO 0.24 BPHYT_RS05225 phosphoenolpyruvate carboxylase — —
Shewanella sp. ANA-3 0.64 Shewana3_3627 MiaB-like tRNA modifying enzyme YliG (RefSeq) 0.53 Shewana3_3906 phosphoenolpyruvate carboxylase (RefSeq) low > 73
Rhodanobacter sp. FW510-T8 0.64 OKGIIK_04755 rimO 30S ribosomal protein S12 methylthiotransferase RimO 0.25 OKGIIK_11820 ppc phosphoenolpyruvate carboxylase low > 52
Cupriavidus basilensis FW507-4G11 0.64 RR42_RS07640 ribosomal protein S12 methylthiotransferase 0.24 RR42_RS15905 phosphoenolpyruvate carboxylase low > 128
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS22185 30S ribosomal protein S12 methylthiotransferase RimO 0.23 QEN71_RS24955 phosphoenolpyruvate carboxylase low > 153
Dyella japonica UNC79MFTsu3.2 0.63 ABZR86_RS08100 30S ribosomal protein S12 methylthiotransferase RimO 0.24 ABZR86_RS11555 phosphoenolpyruvate carboxylase low > 74
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00855 SSU ribosomal protein S12P methylthiotransferase 0.24 H281DRAFT_00197 Phosphoenolpyruvate carboxylase, type 1 low > 103
Shewanella oneidensis MR-1 0.63 SO4072 yliG MiaB-like putative RNA modifying enzyme YliG (NCBI ptt file) 0.53 SO0274 ppc phosphoenolpyruvate carboxylase (NCBI ptt file) low > 76
Paraburkholderia graminis OAS925 0.63 ABIE53_002068 ribosomal protein S12 methylthiotransferase 0.25 ABIE53_001314 phosphoenolpyruvate carboxylase low > 113
Rhodopseudomonas palustris CGA009 0.63 TX73_013865 30S ribosomal protein S12 methylthiotransferase RimO 0.26 TX73_009115 phosphoenolpyruvate carboxylase low > 86
Sphingomonas koreensis DSMZ 15582 0.62 Ga0059261_0282 ribosomal protein S12 methylthiotransferase RimO 0.22 Ga0059261_2719 Phosphoenolpyruvate carboxylase, type 1 (EC 4.1.1.31) low > 68
Herbaspirillum seropedicae SmR1 0.62 HSERO_RS15005 ribosomal protein S12 methylthiotransferase 0.24 HSERO_RS14670 phosphoenolpyruvate carboxylase low > 78
Hydrogenophaga sp. GW460-11-11-14-LB1 0.61 GFF4923 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.25 GFF115 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 90
Variovorax sp. SCN45 0.61 GFF400 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase (EC 2.8.4.4) 0.24 GFF3838 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 127
Variovorax sp. OAS795 0.61 ABID97_RS17220 30S ribosomal protein S12 methylthiotransferase RimO 0.24 ABID97_RS08220 phosphoenolpyruvate carboxylase low > 91
Acidovorax sp. GW101-3H11 0.60 Ac3H11_364 Ribosomal protein S12p Asp88 (E. coli) methylthiotransferase 0.24 Ac3H11_3553 Phosphoenolpyruvate carboxylase (EC 4.1.1.31) low > 79
Mucilaginibacter yixingensis YX-36 DSM 26809 0.32 ABZR88_RS15425 30S ribosomal protein S12 methylthiotransferase RimO 0.11 ABZR88_RS09465 phosphoenolpyruvate carboxylase — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.31 CA264_15685 30S ribosomal protein S12 methylthiotransferase RimO 0.11 CA264_05530 phosphoenolpyruvate carboxylase 0.28 71
Pedobacter sp. GW460-11-11-14-LB5 0.31 CA265_RS16365 30S ribosomal protein S12 methylthiotransferase RimO 0.11 CA265_RS21350 phosphoenolpyruvate carboxylase low > 88
Echinicola vietnamensis KMM 6221, DSM 17526 0.31 Echvi_0564 ribosomal protein S12 methylthiotransferase RimO 0.12 Echvi_3727 Phosphoenolpyruvate carboxylase low > 79
Synechococcus elongatus PCC 7942 0.31 Synpcc7942_2512 hypothetical protein 0.24 Synpcc7942_2252 ppc phosphoenolpyruvate carboxylase — —

Not shown: 15 genomes with orthologs for AO353_16875 only; 9 genomes with orthologs for AO353_16310 only