Conservation of cofitness between A4249_RS11465 and A4249_RS10810 in Brevundimonas sp. GW460-12-10-14-LB2

74 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Brevundimonas sp. GW460-12-10-14-LB2 1.0 A4249_RS11465 Cys-tRNA(Pro) deacylase 1.0 A4249_RS10810 response regulator transcription factor 0.51 16
Agrobacterium fabrum C58 0.66 Atu0275 hypothetical protein 0.61 Atu0978 two component response regulator — —
Rhizobium sp. OAE497 0.64 ABIE40_RS01230 Cys-tRNA(Pro) deacylase 0.62 ABIE40_RS05700 response regulator transcription factor low > 107
Caulobacter crescentus NA1000 0.62 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.83 CCNA_02845 two-component response regulator low > 66
Caulobacter crescentus NA1000 Δfur 0.62 CCNA_01014 cysteinyl-tRNA(Pro) deacylase 0.83 CCNA_02845 two-component response regulator low > 67
Sinorhizobium meliloti 1021 0.62 SMc00385 hypothetical protein 0.61 SMc02366 transcriptional regulator low > 103
Rhodospirillum rubrum S1H 0.61 Rru_A3668 hypothetical protein (NCBI) 0.62 Rru_A2913 Two component Transcriptional regulator, Winged helix family (NCBI) low > 58
Magnetospirillum magneticum AMB-1 0.57 AMB_RS00065 Cys-tRNA(Pro) deacylase 0.66 AMB_RS14570 DNA-binding response regulator — —
Rhodopseudomonas palustris CGA009 0.52 TX73_022270 Cys-tRNA(Pro) deacylase 0.62 TX73_009945 response regulator transcription factor low > 86
Pectobacterium carotovorum WPP14 0.40 HER17_RS15635 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.42 HER17_RS13650 heavy metal response regulator transcription factor low > 75
Acinetobacter radioresistens SK82 0.39 MPMX26_01615 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.45 MPMX26_03114 Transcriptional regulatory protein CusR — —
Azospirillum sp. SherDot2 0.38 MPMX19_02507 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.63 MPMX19_00794 Transcriptional activator protein CopR low > 112
Azospirillum brasilense Sp245 0.38 AZOBR_RS00470 hypothetical protein 0.63 AZOBR_RS10800 XRE family transcriptional regulator low > 97
Rahnella sp. WP5 0.38 EX31_RS22565 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 EX31_RS18870 heavy metal response regulator transcription factor low > 89
Enterobacter asburiae PDN3 0.37 EX28DRAFT_2477 Cys-tRNA(Pro) deacylase 0.48 EX28DRAFT_1165 heavy metal response regulator low > 76
Serratia liquefaciens MT49 0.37 IAI46_05300 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.44 IAI46_16745 heavy metal response regulator transcription factor low > 86
Shewanella oneidensis MR-1 0.37 SO1124 conserved hypothetical protein TIGR00011 (NCBI ptt file) 0.53 SO4428 DNA-binding response regulator (NCBI ptt file) low > 76
Shewanella amazonensis SB2B 0.37 Sama_0531 YbaK/EbsC protein (RefSeq) 0.50 Sama_3534 response regulator receiver protein (RefSeq) — —
Shewanella sp. ANA-3 0.37 Shewana3_0957 ybaK/ebsC protein (RefSeq) 0.53 Shewana3_0282 two component transcriptional regulator (RefSeq) low > 73
Klebsiella michiganensis M5al 0.37 BWI76_RS06870 aminoacyl-tRNA deacylase 0.40 BWI76_RS18590 DNA-binding response regulator low > 92
Escherichia coli ECRC98 0.36 JDDGAC_11750 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 JDDGAC_11350 cusR copper response regulator transcription factor CusR low > 86
Escherichia coli ECRC101 0.36 MCAODC_27325 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 MCAODC_26920 cusR copper response regulator transcription factor CusR low > 87
Escherichia coli ECRC100 0.36 OKFHMN_08105 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 OKFHMN_07705 cusR copper response regulator transcription factor CusR low > 80
Escherichia coli Nissle 1917 0.36 ECOLIN_RS02850 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 ECOLIN_RS03125 copper response regulator transcription factor CusR — —
Escherichia coli ECRC99 0.36 KEDOAH_19865 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 KEDOAH_20265 cusR copper response regulator transcription factor CusR — —
Escherichia fergusonii Becca 0.36 EFB2_03577 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 EFB2_03523 Transcriptional regulatory protein CusR low > 86
Escherichia coli ECRC102 0.36 NIAGMN_06155 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 NIAGMN_05760 cusR copper response regulator transcription factor CusR — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_03193 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 OHPLBJKB_03138 Transcriptional regulatory protein CusR low > 73
Enterobacter sp. TBS_079 0.36 MPMX20_01082 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.47 MPMX20_02319 Transcriptional regulatory protein CusR 0.15 63
Escherichia coli ECOR38 0.36 HEPCGN_06725 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 HEPCGN_00585 cusR copper response regulator transcription factor CusR low > 87
Escherichia coli ECOR27 0.36 NOLOHH_01035 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.45 NOLOHH_24085 cusR copper response regulator transcription factor CusR low > 75
Escherichia coli ECRC62 0.36 BNILDI_22455 ybaK Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.46 BNILDI_22095 cusR copper response regulator transcription factor CusR low > 75
Escherichia coli BW25113 0.36 b0481 ybaK hypothetical protein (NCBI) 0.46 b0571 cusR DNA-binding response regulator in two-component regulatory system with CusS (NCBI) low > 76
Escherichia coli BL21 0.36 ECD_00432 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase 0.45 ECD_00532 response regulator in two-component regulatory system with CusS low > 61
Pseudomonas syringae pv. syringae B728a ΔmexB 0.36 Psyr_3903 Conserved hypothetical protein 11 0.49 Psyr_3127 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Pseudomonas syringae pv. syringae B728a 0.36 Psyr_3903 Conserved hypothetical protein 11 0.49 Psyr_3127 Response regulator receiver:Transcriptional regulatory protein, C-terminal low > 86
Marinobacter adhaerens HP15 0.36 HP15_3802 conserved hypothetical protein CHP00011 0.64 HP15_3484 DNA-binding response regulator — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.35 GFF4401 Cys-tRNA(Pro) deacylase YbaK 0.39 GFF3273 Putative two-component system response regulator YedW low > 78
Castellaniella sp019104865 MT123 0.35 ABCV34_RS00510 aminoacyl-tRNA deacylase 0.40 ABCV34_RS03230 heavy metal response regulator transcription factor low > 48
Pseudomonas sp. S08-1 0.35 OH686_20370 Cys-tRNA(Pro) deacylase YbaK 0.42 OH686_22680 Copper-sensing two-component system response regulator CusR low > 80
Dickeya dadantii 3937 0.35 DDA3937_RS05835 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.43 DDA3937_RS03385 heavy metal response regulator transcription factor low > 74
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS04270 membrane protein 0.42 HSERO_RS12420 transcriptional regulator low > 78
Ralstonia solanacearum PSI07 0.34 RPSI07_RS12155 Cys-tRNA(Pro) deacylase 0.43 RPSI07_RS02355 DNA-binding response regulator low > 81
Ralstonia solanacearum GMI1000 0.34 RS_RS12760 Cys-tRNA(Pro) deacylase 0.43 RS_RS20255 DNA-binding response regulator low > 80
Pseudomonas fluorescens FW300-N2C3 0.33 AO356_18260 hypothetical protein 0.47 AO356_23125 transcriptional regulator low > 104
Pseudomonas fluorescens FW300-N1B4 0.33 Pf1N1B4_765 Cys-tRNA(Pro) deacylase YbaK 0.48 Pf1N1B4_4267 DNA-binding response regulator — —
Pseudomonas fluorescens GW456-L13 0.33 PfGW456L13_1736 Cys-tRNA(Pro) deacylase YbaK 0.43 PfGW456L13_4017 Copper-sensing two-component system response regulator CusR low > 87
Ralstonia sp. UNC404CL21Col 0.33 ABZR87_RS00800 Cys-tRNA(Pro) deacylase 0.41 ABZR87_RS21725 heavy metal response regulator transcription factor low > 80
Pseudomonas fluorescens FW300-N2E2 0.33 Pf6N2E2_5576 Cys-tRNA(Pro) deacylase YbaK 0.47 Pf6N2E2_504 DNA-binding response regulator low > 103
Pseudomonas stutzeri RCH2 0.33 Psest_1454 ybaK/ebsC protein 0.43 Psest_1598 heavy metal response regulator low > 67
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS03340 membrane protein 0.41 RR42_RS31535 transcriptional regulator low > 128
Ralstonia solanacearum IBSBF1503 0.33 RALBFv3_RS05145 Cys-tRNA(Pro) deacylase 0.42 RALBFv3_RS20860 DNA-binding response regulator low > 76
Ralstonia solanacearum UW163 0.33 UW163_RS08480 Cys-tRNA(Pro) deacylase 0.42 UW163_RS21995 DNA-binding response regulator — —
Paraburkholderia bryophila 376MFSha3.1 0.33 H281DRAFT_04124 Cys-tRNA(Pro) deacylase 0.45 H281DRAFT_01736 two-component system, OmpR family, copper resistance phosphate regulon response regulator CusR low > 103
Pseudomonas putida KT2440 0.32 PP_1077 Cys-tRNAPro deacylase 0.49 PP_2907 DNA-binding response regulator low > 96
Shewanella loihica PV-4 0.32 Shew_0016 ybaK/ebsC protein (RefSeq) 0.54 Shew_0097 two component transcriptional regulator (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_10815 Cys-tRNA(Pro) deacylase 0.44 CSW01_15165 DNA-binding response regulator low > 62
Pseudomonas fluorescens FW300-N2E3 0.32 AO353_04170 hypothetical protein 0.49 AO353_25485 XRE family transcriptional regulator low > 101
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS15940 membrane protein 0.46 BPHYT_RS25955 transcriptional regulator low > 109
Alteromonas macleodii MIT1002 0.32 MIT1002_01641 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.57 MIT1002_03097 Transcriptional activator protein CopR low > 70
Parabacteroides merdae CL09T00C40 0.32 HMPREF1078_RS02420 Cys-tRNA(Pro) deacylase 0.44 HMPREF1078_RS01665 response regulator transcription factor low > 61
Paraburkholderia sabiae LMG 24235 0.32 QEN71_RS02765 Cys-tRNA(Pro) deacylase 0.48 QEN71_RS15305 heavy metal response regulator transcription factor low > 153
Pseudomonas fluorescens SBW25-INTG 0.32 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.48 PFLU_RS12570 response regulator transcription factor low > 109
Pseudomonas fluorescens SBW25 0.32 PFLU_RS05670 Cys-tRNA(Pro) deacylase 0.48 PFLU_RS12570 response regulator transcription factor low > 109
Pseudomonas simiae WCS417 0.32 PS417_05585 hypothetical protein 0.48 PS417_11825 transcriptional regulator low > 88
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF288 Transcriptional regulator 0.50 GFF1757 response regulator in two-component regulatory system with PhoQ — —
Variovorax sp. SCN45 0.31 GFF3103 Cys-tRNA(Pro) deacylase YbaK 0.49 GFF2474 Two-component transcriptional response regulator SMc02366, LuxR family low > 127
Acidovorax sp. GW101-3H11 0.31 Ac3H11_2624 Transcriptional regulator 0.44 Ac3H11_4210 DNA-binding heavy metal response regulator low > 79
Dechlorosoma suillum PS 0.30 Dsui_1216 ybaK/ebsC protein 0.46 Dsui_2644 heavy metal response regulator low > 51
Dickeya dianthicola ME23 0.30 DZA65_RS06215 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.47 DZA65_RS03595 copper/silver response regulator transcription factor SilR low > 75
Dickeya dianthicola 67-19 0.30 HGI48_RS05880 Cys-tRNA(Pro)/Cys-tRNA(Cys) deacylase YbaK 0.47 HGI48_RS03485 heavy metal response regulator transcription factor low > 71
Bacteroides stercoris CC31F 0.30 HMPREF1181_RS15180 Cys-tRNA(Pro) deacylase 0.37 HMPREF1181_RS01000 response regulator transcription factor low > 56
Phocaeicola dorei CL03T12C01 0.30 ABI39_RS15335 Cys-tRNA(Pro) deacylase 0.41 ABI39_RS05370 response regulator transcription factor low > 72
Bacteroides ovatus ATCC 8483 0.30 BACOVA_03702 YbaK/EbsC protein 0.42 BACOVA_02385 response regulator receiver domain protein low > 94
Bacteroides thetaiotaomicron VPI-5482 0.28 BT0579 putative transcription regulator (NCBI ptt file) 0.42 BT0682 two-component system response regulator (NCBI ptt file) — —

Not shown: 8 genomes with orthologs for A4249_RS11465 only; 16 genomes with orthologs for A4249_RS10810 only