Conservation of cofitness between Dshi_1366 and Dshi_1576 in Dinoroseobacter shibae DFL-12

71 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Dinoroseobacter shibae DFL-12 1.0 Dshi_1366 aminotransferase class-III (RefSeq) 1.0 Dshi_1576 putative TIM-barrel protein, nifR3 family (RefSeq) 0.45 7
Sinorhizobium meliloti 1021 0.75 SMc01534 omega amino acid--pyruvate transaminase 0.50 SMc01041 NIFR3-like protein low > 103
Rhizobium sp. OAE497 0.74 ABIE40_RS13520 aspartate aminotransferase family protein 0.49 ABIE40_RS09080 tRNA dihydrouridine synthase DusB low > 107
Caulobacter crescentus NA1000 0.69 CCNA_03245 beta alanine-pyruvate transaminase 0.41 CCNA_01813 tRNA-dihydrouridine synthase low > 66
Caulobacter crescentus NA1000 Δfur 0.69 CCNA_03245 beta alanine-pyruvate transaminase 0.41 CCNA_01813 tRNA-dihydrouridine synthase low > 67
Pseudomonas stutzeri RCH2 0.64 Psest_4306 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.40 Psest_1016 putative TIM-barrel protein, nifR3 family low > 67
Agrobacterium fabrum C58 0.63 Atu3329 beta alanine--pyruvate transaminase 0.50 Atu1444 nitrogen regulation protein low > 89
Paraburkholderia sabiae LMG 24235 0.63 QEN71_RS18155 aspartate aminotransferase family protein 0.39 QEN71_RS26770 tRNA dihydrouridine synthase DusB low > 153
Burkholderia phytofirmans PsJN 0.62 BPHYT_RS21095 omega amino acid--pyruvate aminotransferase 0.37 BPHYT_RS16585 tRNA-dihydrouridine synthase B low > 109
Shewanella oneidensis MR-1 0.62 SO3497 aminotransferase, class III (NCBI ptt file) 0.32 SO0394 conserved hypothetical protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.61 Shewana3_3106 beta alanine--pyruvate transaminase (RefSeq) 0.31 Shewana3_0399 nifR3 family TIM-barrel protein (RefSeq) low > 73
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS19660 aspartate aminotransferase family protein 0.39 ABZR87_RS07650 tRNA dihydrouridine synthase DusB low > 80
Castellaniella sp019104865 MT123 0.61 ABCV34_RS08825 aspartate aminotransferase family protein 0.37 ABCV34_RS07960 tRNA dihydrouridine synthase DusB low > 48
Paraburkholderia bryophila 376MFSha3.1 0.61 H281DRAFT_01578 beta-alanine--pyruvate transaminase 0.38 H281DRAFT_04249 tRNA-U20-dihydrouridine synthase low > 103
Shewanella amazonensis SB2B 0.61 Sama_2649 beta alanine--pyruvate transaminase (RefSeq) 0.35 Sama_3225 tRNA-dihydrouridine synthase B (RefSeq) low > 62
Ralstonia solanacearum GMI1000 0.60 RS_RS22230 aspartate aminotransferase family protein 0.38 RS_RS02515 tRNA dihydrouridine synthase DusB low > 80
Rhodopseudomonas palustris CGA009 0.60 TX73_006050 aspartate aminotransferase family protein 0.48 TX73_013410 tRNA dihydrouridine synthase DusB low > 86
Ralstonia solanacearum PSI07 0.60 RPSI07_RS04875 aspartate aminotransferase family protein 0.38 RPSI07_RS21520 tRNA dihydrouridine synthase DusB low > 81
Herbaspirillum seropedicae SmR1 0.59 HSERO_RS23240 omega amino acid--pyruvate aminotransferase 0.36 HSERO_RS02050 tRNA-dihydrouridine synthase B low > 78
Shewanella loihica PV-4 0.58 Shew_0966 beta alanine--pyruvate transaminase (RefSeq) 0.32 Shew_0330 nifR3 family TIM-barrel protein (RefSeq) low > 60
Variovorax sp. SCN45 0.57 GFF918 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) 0.38 GFF2144 tRNA-dihydrouridine synthase DusB low > 127
Variovorax sp. OAS795 0.55 ABID97_RS09320 aspartate aminotransferase family protein 0.39 ABID97_RS24735 tRNA dihydrouridine synthase DusB low > 91
Rhodospirillum rubrum S1H 0.54 Rru_A1541 Aminotransferase class-III (NCBI) 0.39 Rru_A1676 Dihydrouridine synthase TIM-barrel protein nifR3 (NCBI) low > 58
Azospirillum sp. SherDot2 0.53 MPMX19_05489 Beta-alanine--pyruvate aminotransferase 0.45 MPMX19_01110 tRNA-dihydrouridine synthase B low > 112
Azospirillum brasilense Sp245 0.53 AZOBR_RS22505 omega amino acid--pyruvate aminotransferase 0.45 AZOBR_RS14420 tRNA-dihydrouridine synthase low > 97
Pseudomonas simiae WCS417 0.52 PS417_11165 omega amino acid--pyruvate aminotransferase 0.36 PS417_02950 tRNA-dihydrouridine synthase B — —
Serratia liquefaciens MT49 0.51 IAI46_02645 aspartate aminotransferase family protein 0.34 IAI46_22775 tRNA dihydrouridine synthase DusB 0.43 61
Acidovorax sp. GW101-3H11 0.50 Ac3H11_4342 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) 0.35 Ac3H11_3996 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 79
Pseudomonas sp. S08-1 0.50 OH686_07315 Omega-amino acid--pyruvate aminotransferase 0.38 OH686_07610 tRNA-dihydrouridine synthase DusB low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF2738 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) 0.38 GFF634 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 90
Pseudomonas syringae pv. syringae B728a ΔmexB 0.49 Psyr_0678 Aminotransferase class-III 0.35 Psyr_4404 tRNA-U20-dihydrouridine synthase low > 86
Pseudomonas syringae pv. syringae B728a 0.49 Psyr_0678 Aminotransferase class-III 0.35 Psyr_4404 tRNA-U20-dihydrouridine synthase low > 86
Pseudomonas fluorescens SBW25-INTG 0.49 PFLU_RS03325 aspartate aminotransferase family protein 0.36 PFLU_RS03025 tRNA dihydrouridine synthase DusB low > 109
Pseudomonas fluorescens FW300-N1B4 0.49 Pf1N1B4_1239 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) 0.35 Pf1N1B4_1313 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 87
Pseudomonas fluorescens SBW25 0.49 PFLU_RS03325 aspartate aminotransferase family protein 0.36 PFLU_RS03025 tRNA dihydrouridine synthase DusB low > 109
Pseudomonas fluorescens FW300-N2E2 0.49 Pf6N2E2_3463 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) 0.35 Pf6N2E2_3517 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.49 AO356_07955 omega amino acid--pyruvate aminotransferase 0.36 AO356_08215 tRNA-dihydrouridine synthase B low > 104
Pseudomonas sp. RS175 0.49 PFR28_05262 Omega-amino acid--pyruvate aminotransferase 0.35 PFR28_05216 tRNA-dihydrouridine synthase B low > 88
Pseudomonas putida KT2440 0.49 PP_0596 Omega-amino acid--pyruvate aminotransferase 0.38 PP_4820 tRNA-dihydrouridine synthase B low > 96
Pseudomonas fluorescens FW300-N2E3 0.48 AO353_06085 omega amino acid--pyruvate aminotransferase 0.36 AO353_13660 tRNA-dihydrouridine synthase B low > 101
Pseudomonas fluorescens GW456-L13 0.48 PfGW456L13_3 Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18) 0.35 PfGW456L13_55 tRNA dihydrouridine synthase B (EC 1.-.-.-) low > 87
Phaeobacter inhibens DSM 17395 0.29 PGA1_c32300 aminotransferase class-III 0.62 PGA1_c14770 tRNA-dihydrouridine synthase DusB low > 62
Desulfovibrio vulgaris Hildenborough JW710 0.28 DVU2559 bioA adenosylmethionine--8-amino-7-oxononanoate aminotransferase (TIGR) 0.19 DVU0661 dihydrouridine synthase family protein (TIGR) low > 55
Rahnella sp. WP5 0.23 EX31_RS23690 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 EX31_RS12180 tRNA dihydrouridine synthase DusB low > 89
Pectobacterium carotovorum WPP14 0.23 HER17_RS13465 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 HER17_RS20235 tRNA dihydrouridine synthase DusB low > 75
Pedobacter sp. GW460-11-11-14-LB5 0.23 CA265_RS07530 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.32 CA265_RS21125 tRNA dihydrouridine synthase DusB low > 88
Dickeya dianthicola ME23 0.23 DZA65_RS08960 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 DZA65_RS01355 tRNA dihydrouridine synthase DusB low > 75
Dickeya dadantii 3937 0.23 DDA3937_RS08505 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 DDA3937_RS01375 tRNA dihydrouridine synthase DusB low > 74
Dickeya dianthicola 67-19 0.22 HGI48_RS08670 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 HGI48_RS01295 tRNA dihydrouridine synthase DusB low > 71
Synechococcus elongatus PCC 7942 0.22 Synpcc7942_0031 bioA aminotransferase 0.25 Synpcc7942_0283 Dihydrouridine synthase TIM-barrel protein nifR3 — —
Enterobacter sp. TBS_079 0.22 MPMX20_01402 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.35 MPMX20_04169 tRNA-dihydrouridine synthase B low > 85
Acinetobacter radioresistens SK82 0.22 MPMX26_02454 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.36 MPMX26_02127 tRNA-dihydrouridine synthase B low > 36
Pantoea sp. MT58 0.22 IAI47_13535 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.32 IAI47_02385 tRNA dihydrouridine synthase DusB low > 76
Sphingomonas koreensis DSMZ 15582 0.21 Ga0059261_3674 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.43 Ga0059261_0140 tRNA-U20-dihydrouridine synthase low > 68
Escherichia coli BW25113 0.21 b0774 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase (NCBI) 0.35 b3260 dusB tRNA-dihydrouridine synthase B (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.21 OHPLBJKB_02939 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.31 OHPLBJKB_00445 putative tRNA-dihydrouridine synthase low > 73
Enterobacter asburiae PDN3 0.21 EX28DRAFT_2217 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.34 EX28DRAFT_3313 putative TIM-barrel protein, nifR3 family low > 76
Pontibacter actiniarum KMM 6156, DSM 19842 0.21 CA264_02410 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.30 CA264_17860 tRNA dihydrouridine synthase DusB low > 74
Escherichia coli ECOR27 0.21 NOLOHH_22775 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 NOLOHH_09470 dusB tRNA dihydrouridine synthase DusB low > 57
Escherichia coli ECRC62 0.21 BNILDI_21045 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 BNILDI_02050 dusB tRNA dihydrouridine synthase DusB — —
Vibrio cholerae E7946 ATCC 55056 0.21 CSW01_05640 adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA 0.35 CSW01_01495 tRNA dihydrouridine synthase DusB low > 62
Escherichia coli BL21 0.21 ECD_00741 7,8-diaminopelargonic acid synthase, PLP-dependent 0.35 ECD_03118 tRNA-dihydrouridine synthase B 0.50 36
Escherichia fergusonii Becca 0.20 EFB2_03331 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.35 EFB2_00564 tRNA-dihydrouridine synthase B low > 86
Alteromonas macleodii MIT1002 0.20 MIT1002_01378 Adenosylmethionine-8-amino-7-oxononanoate aminotransferase 0.38 MIT1002_03957 putative tRNA-dihydrouridine synthase low > 70
Escherichia coli Nissle 1917 0.20 ECOLIN_RS04125 adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 ECOLIN_RS18725 tRNA dihydrouridine synthase DusB low > 52
Escherichia coli ECRC101 0.20 OKFHMN_06405 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 OKFHMN_17685 dusB tRNA dihydrouridine synthase DusB — —
Escherichia coli ECRC101 0.20 MCAODC_25620 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 MCAODC_08205 dusB tRNA dihydrouridine synthase DusB — —
Escherichia coli ECRC98 0.20 JDDGAC_10040 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 JDDGAC_21310 dusB tRNA dihydrouridine synthase DusB — —
Escherichia coli ECOR38 0.20 HEPCGN_01635 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 HEPCGN_16505 dusB tRNA dihydrouridine synthase DusB low > 85
Escherichia coli ECRC99 0.20 KEDOAH_21505 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.31 KEDOAH_10465 dusB tRNA dihydrouridine synthase DusB — —
Escherichia coli ECRC102 0.20 NIAGMN_04450 bioA adenosylmethionine--8-amino-7-oxononanoate transaminase 0.35 NIAGMN_15445 dusB tRNA dihydrouridine synthase DusB — —
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_2790 adenosylmethionine-8-amino-7-oxononanoate transaminase 0.30 Echvi_1531 putative TIM-barrel protein, nifR3 family low > 79

Not shown: 11 genomes with orthologs for Dshi_1366 only; 16 genomes with orthologs for Dshi_1576 only