| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Bacteroides thetaiotaomicron VPI-5482 | 1.0 | BT0304 | | acriflavine resistance protein A precursor (NCBI ptt file) | 1.0 | BT2386 | | AsnC family transcriptional regulator (NCBI ptt file) | 0.39 | 16 |
| Bacteroides ovatus ATCC 8483 | 0.91 | BACOVA_00421 | | ATP synthase, Delta/Epsilon chain, long alpha-helix domain protein | 0.99 | BACOVA_03031 | | transcriptional regulator, AsnC family | low | > 94 |
| Phocaeicola dorei CL03T12C01 | 0.75 | ABI39_RS18720 | | efflux RND transporter periplasmic adaptor subunit | 0.96 | ABI39_RS13790 | | Lrp/AsnC family transcriptional regulator | low | > 72 |
| Phocaeicola vulgatus CL09T03C04 | 0.74 | HMPREF1058_RS05165 | | efflux RND transporter periplasmic adaptor subunit | 0.96 | HMPREF1058_RS17595 | | Lrp/AsnC family transcriptional regulator | low | > 67 |
| Parabacteroides merdae CL09T00C40 | 0.57 | HMPREF1078_RS00005 | | efflux RND transporter periplasmic adaptor subunit | 0.94 | HMPREF1078_RS07325 | | Lrp/AsnC family transcriptional regulator | low | > 61 |
| Shewanella sp. ANA-3 | 0.31 | Shewana3_1992 | | secretion protein HlyD family protein (RefSeq) | 0.33 | Shewana3_2049 | | leucine-responsive transcriptional regulator (RefSeq) | low | > 73 |
| Azospirillum brasilense Sp245 | 0.28 | AZOBR_RS26975 | | secretion protein HylD | 0.34 | AZOBR_RS32440 | | ArsR family transcriptional regulator | low | > 97 |
| Herbaspirillum seropedicae SmR1 | 0.25 | HSERO_RS02415 | | hemolysin D | 0.34 | HSERO_RS00865 | | AsnC family transcriptional regulator | low | > 78 |
| Rhizobium sp. OAE497 | 0.24 | ABIE40_RS23880 | | efflux RND transporter periplasmic adaptor subunit | 0.31 | ABIE40_RS02530 | | Lrp/AsnC family transcriptional regulator | low | > 107 |
| Paraburkholderia sabiae LMG 24235 | 0.24 | QEN71_RS03450 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | QEN71_RS23705 | | Lrp/AsnC family transcriptional regulator | low | > 153 |
| Shewanella loihica PV-4 | 0.23 | Shew_3797 | | RND family efflux transporter MFP subunit (RefSeq) | 0.34 | Shew_3558 | | AsnC family transcriptional regulator (RefSeq) | low | > 60 |
| Pseudomonas fluorescens SBW25-INTG | 0.23 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | PFLU_RS19350 | | Lrp/AsnC family transcriptional regulator | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.23 | PFLU_RS13285 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | PFLU_RS19350 | | Lrp/AsnC family transcriptional regulator | low | > 109 |
| Pseudomonas simiae WCS417 | 0.23 | PS417_12590 | | RND transporter | 0.35 | PS417_17540 | | ArsR family transcriptional regulator | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.22 | ABZR86_RS07565 | | efflux RND transporter periplasmic adaptor subunit | 0.30 | ABZR86_RS15320 | | Lrp/AsnC family transcriptional regulator | low | > 74 |
| Paraburkholderia graminis OAS925 | 0.22 | ABIE53_005787 | | membrane fusion protein (multidrug efflux system) | 0.34 | ABIE53_005396 | | Lrp/AsnC family leucine-responsive transcriptional regulator | low | > 113 |
| Rhodanobacter sp. FW510-T8 | 0.22 | OKGIIK_09165 | acrA | efflux transporter periplasmic adaptor subunit | 0.33 | OKGIIK_06660 | lrp | AsnC family transcriptional regulator | low | > 52 |
| Sinorhizobium meliloti 1021 | 0.21 | SMc03972 | | multidrug efflux system transmembrane protein | 0.33 | SMc00131 | | transcriptional regulator | low | > 103 |
| Pseudomonas fluorescens GW456-L13 | 0.21 | PfGW456L13_2955 | | RND efflux system, membrane fusion protein CmeA | 0.35 | PfGW456L13_3539 | | Transcriptional regulator BkdR of isoleucine and valine catabolism operon | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.21 | AO356_28725 | | RND transporter | 0.34 | AO356_22995 | | ArsR family transcriptional regulator | — | — |
| Klebsiella michiganensis M5al | 0.21 | BWI76_RS27690 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.34 | BWI76_RS09655 | | leucine-responsive regulatory protein | low | > 92 |
| Rahnella sp. WP5 | 0.21 | EX31_RS00465 | | efflux RND transporter periplasmic adaptor subunit | 0.34 | EX31_RS18530 | | leucine-responsive transcriptional regulator Lrp | low | > 89 |
| Rhodanobacter denitrificans MT42 | 0.21 | LRK55_RS01870 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | LRK55_RS00365 | | winged helix-turn-helix transcriptional regulator | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.21 | LRK54_RS02095 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | LRK54_RS00595 | | winged helix-turn-helix transcriptional regulator | low | > 59 |
| Pseudomonas sp. S08-1 | 0.21 | OH686_07375 | | RND efflux system, membrane fusion protein | 0.35 | OH686_08830 | | Transcriptional regulator, AsnC family | low | > 80 |
| Pantoea sp. MT58 | 0.21 | IAI47_14510 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | IAI47_14600 | | Lrp/AsnC family transcriptional regulator | low | > 76 |
| Pseudomonas fluorescens FW300-N2E3 | 0.21 | AO353_26840 | | RND transporter | 0.35 | AO353_26630 | | ArsR family transcriptional regulator | low | > 101 |
| Variovorax sp. OAS795 | 0.21 | ABID97_RS00320 | | efflux RND transporter periplasmic adaptor subunit | 0.32 | ABID97_RS01965 | | Lrp/AsnC family transcriptional regulator | low | > 91 |
| Escherichia fergusonii Becca | 0.21 | EFB2_00559 | | Multidrug export protein AcrE | 0.34 | EFB2_03172 | | Leucine-responsive regulatory protein | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.21 | MIT1002_00134 | | Acriflavine resistance protein A precursor | 0.35 | MIT1002_02181 | | Leucine-responsive regulatory protein | 0.49 | 16 |
| Kangiella aquimarina DSM 16071 | 0.21 | B158DRAFT_0734 | | RND family efflux transporter, MFP subunit | 0.37 | B158DRAFT_1822 | | Transcriptional regulators | low | > 40 |
| Dickeya dadantii 3937 | 0.21 | DDA3937_RS14125 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | DDA3937_RS05680 | | Lrp/AsnC family transcriptional regulator | low | > 74 |
| Sphingomonas koreensis DSMZ 15582 | 0.20 | Ga0059261_0560 | | RND family efflux transporter, MFP subunit | 0.31 | Ga0059261_0033 | | transcriptional regulator, AsnC family | low | > 68 |
| Rhodospirillum rubrum S1H | 0.20 | Rru_A1117 | | Secretion protein HlyD (NCBI) | 0.34 | Rru_A2906 | | Transcriptional Regulator, AsnC family (NCBI) | low | > 58 |
| Shewanella amazonensis SB2B | 0.20 | Sama_3553 | | multidrug resistance protein AcrA/AcrE family (RefSeq) | 0.35 | Sama_3419 | | AsnC family transcriptional regulator (RefSeq) | low | > 62 |
| Pseudomonas fluorescens FW300-N1B4 | 0.20 | Pf1N1B4_4773 | | RND efflux system, membrane fusion protein CmeA | 0.35 | Pf1N1B4_4481 | | Transcriptional regulator BkdR of isoleucine and valine catabolism operon | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.20 | Pf6N2E2_1660 | | RND efflux system, membrane fusion protein CmeA | 0.34 | Pf6N2E2_482 | | Transcriptional regulator BkdR of isoleucine and valine catabolism operon | low | > 103 |
| Cupriavidus basilensis FW507-4G11 | 0.20 | RR42_RS32415 | | hemolysin D | 0.36 | RR42_RS22825 | | AsnC family transcriptional regulator | low | > 128 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.20 | GFF3839 | | RND efflux system, membrane fusion protein CmeA | 0.35 | GFF5022 | | Transcriptional regulator, AsnC family | low | > 90 |
| Ralstonia solanacearum PSI07 | 0.20 | RPSI07_RS23900 | | efflux RND transporter periplasmic adaptor subunit | 0.31 | RPSI07_RS09695 | | Lrp/AsnC family transcriptional regulator | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.20 | RS_RS00050 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.32 | RS_RS23765 | | Lrp/AsnC family transcriptional regulator | low | > 80 |
| Pseudomonas sp. RS175 | 0.20 | PFR28_02462 | | Multidrug resistance protein MexA | 0.34 | PFR28_02444 | | Leucine-responsive regulatory protein | low | > 88 |
| Variovorax sp. SCN45 | 0.20 | GFF3726 | | RND efflux system, membrane fusion protein | 0.33 | GFF3756 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | low | > 127 |
| Acinetobacter radioresistens SK82 | 0.20 | MPMX26_00690 | | Multidrug efflux pump subunit AcrA | 0.32 | MPMX26_01467 | | Leucine-responsive regulatory protein | low | > 36 |
| Escherichia coli Nissle 1917 | 0.20 | ECOLIN_RS07785 | | efflux RND transporter periplasmic adaptor subunit | 0.34 | ECOLIN_RS04730 | | leucine-responsive transcriptional regulator Lrp | low | > 52 |
| Escherichia coli ECOR38 | 0.20 | HEPCGN_25700 | acrA | efflux transporter periplasmic adaptor subunit | 0.34 | HEPCGN_22935 | lrp | leucine-responsive transcriptional regulator Lrp | low | > 85 |
| Serratia liquefaciens MT49 | 0.20 | IAI46_12715 | | efflux RND transporter periplasmic adaptor subunit | 0.34 | IAI46_08555 | | leucine-responsive transcriptional regulator Lrp | low | > 86 |
| Dechlorosoma suillum PS | 0.20 | Dsui_3181 | | RND family efflux transporter, MFP subunit | 0.30 | Dsui_3228 | | transcriptional regulator | low | > 51 |
| Pseudomonas putida KT2440 | 0.20 | PP_3455 | | Multidrug efflux RND membrane fusion protein | 0.36 | PP_1307 | | AsnC family transcriptional regulator | low | > 96 |
| Magnetospirillum magneticum AMB-1 | 0.20 | AMB_RS17320 | | MexE family multidrug efflux RND transporter periplasmic adaptor subunit | 0.29 | AMB_RS03420 | | Lrp/AsnC family transcriptional regulator | — | — |
| Pseudomonas stutzeri RCH2 | 0.20 | Psest_2145 | | RND family efflux transporter, MFP subunit | 0.35 | Psest_0920 | | Transcriptional regulators | low | > 67 |
| Azospirillum sp. SherDot2 | 0.20 | MPMX19_05883 | | Multidrug resistance protein MexA | 0.34 | MPMX19_03947 | | Leucine-responsive regulatory protein | low | > 112 |
| Enterobacter sp. TBS_079 | 0.20 | MPMX20_04174 | | Multidrug export protein AcrE | 0.34 | MPMX20_01551 | | Leucine-responsive regulatory protein | low | > 85 |
| Escherichia coli ECRC99 | 0.20 | KEDOAH_10490 | acrE | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | 0.34 | KEDOAH_22160 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli ECOR27 | 0.20 | NOLOHH_09445 | acrE | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | 0.34 | NOLOHH_22145 | lrp | leucine-responsive transcriptional regulator Lrp | low | > 57 |
| Pseudomonas syringae pv. syringae B728a | 0.20 | Psyr_2283 | | Secretion protein HlyD | 0.34 | Psyr_0251 | | transcriptional regulator, AsnC family | low | > 86 |
| Escherichia coli ECRC62 | 0.20 | BNILDI_02075 | acrE | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | 0.34 | BNILDI_20400 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli ECRC102 | 0.20 | NIAGMN_15420 | acrE | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | 0.34 | NIAGMN_03295 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli ECRC98 | 0.20 | JDDGAC_21285 | acrE | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | 0.34 | JDDGAC_09385 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli ECRC101 | 0.20 | OKFHMN_17660 | acrE | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | 0.34 | OKFHMN_05575 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Escherichia coli BW25113 | 0.20 | b3265 | acrE | cytoplasmic membrane lipoprotein (NCBI) | 0.34 | b0889 | lrp | DNA-binding transcriptional dual regulator, leucine-binding (NCBI) | low | > 76 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.20 | Psyr_2283 | | Secretion protein HlyD | 0.34 | Psyr_0251 | | transcriptional regulator, AsnC family | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.20 | OHPLBJKB_00440 | | Multidrug export protein AcrE | 0.34 | OHPLBJKB_02779 | | Leucine-responsive regulatory protein | low | > 73 |
| Escherichia coli ECRC101 | 0.20 | MCAODC_08180 | acrE | multidrug efflux RND transporter periplasmic adaptor subunit AcrE | 0.34 | MCAODC_24965 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Ralstonia sp. UNC404CL21Col | 0.19 | ABZR87_RS05310 | | efflux RND transporter periplasmic adaptor subunit | 0.34 | ABZR87_RS13965 | | Lrp/AsnC family transcriptional regulator | low | > 80 |
| Enterobacter asburiae PDN3 | 0.19 | EX28DRAFT_3318 | | RND family efflux transporter, MFP subunit | 0.34 | EX28DRAFT_2043 | | transcriptional regulator, AsnC family | low | > 76 |
| Escherichia coli BL21 | 0.19 | ECD_03123 | | cytoplasmic membrane lipoprotein | 0.34 | ECD_00893 | | leucine-responsive global transcriptional regulator | low | > 60 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.19 | GFF2117 | | RND efflux system, membrane fusion protein CmeA | 0.34 | GFF4893 | | Leucine-responsive regulatory protein, regulator for leucine (or lrp) regulon and high-affinity branched-chain amino acid transport system | low | > 78 |
| Dickeya dianthicola 67-19 | 0.19 | HGI48_RS05795 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | HGI48_RS05725 | | Lrp/AsnC ligand binding domain-containing protein | low | > 71 |
| Acidovorax sp. GW101-3H11 | 0.19 | Ac3H11_4449 | | RND efflux system, membrane fusion protein CmeA | 0.34 | Ac3H11_2849 | | PutR, transcriptional activator of PutA and PutP | low | > 79 |
| Dickeya dianthicola ME23 | 0.19 | DZA65_RS06120 | | efflux RND transporter periplasmic adaptor subunit | 0.35 | DZA65_RS06050 | | Lrp/AsnC family transcriptional regulator | low | > 75 |
| Agrobacterium fabrum C58 | 0.19 | Atu3203 | | RND multidrug efflux membrane permease | 0.33 | Atu4818 | | AsnC family transcriptional regulator | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.18 | HER17_RS15735 | | efflux RND transporter periplasmic adaptor subunit | 0.38 | HER17_RS15805 | | Lrp/AsnC family transcriptional regulator | low | > 75 |
| Erwinia tracheiphila SCR3 | 0.18 | LU632_RS18180 | | efflux RND transporter periplasmic adaptor subunit | 0.33 | LU632_RS09740 | lrp | leucine-responsive transcriptional regulator Lrp | — | — |
| Marinobacter adhaerens HP15 | 0.17 | HP15_932 | | efflux transporter, RND family, MFP subunit | 0.33 | HP15_860 | | transcriptional regulator, AsnC family protein | low | > 73 |
| Dinoroseobacter shibae DFL-12 | 0.08 | Dshi_3902 | | efflux transporter, RND family, MFP subunit (RefSeq) | 0.33 | Dshi_2477 | | transcriptional regulator, AsnC family (RefSeq) | low | > 64 |
Not shown: 5 genomes with orthologs for BT0304 only; 16 genomes with orthologs for BT2386 only