Conservation of cofitness between b3164 and b3778 in Escherichia coli BW25113

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b3164 pnp polynucleotide phosphorylase/polyadenylase (RefSeq) 1.0 b3778 rep DNA helicase and single-stranded DNA-dependent ATPase (NCBI) 0.40 7
Escherichia coli BL21 1.00 ECD_03031 polynucleotide phosphorylase/polyadenylase 1.00 ECD_03656 DNA helicase and single-stranded DNA-dependent ATPase — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_00536 Polyribonucleotide nucleotidyltransferase 1.00 OHPLBJKB_04276 ATP-dependent DNA helicase Rep low > 73
Escherichia coli ECRC101 1.00 MCAODC_08660 pnp polyribonucleotide nucleotidyltransferase 0.99 MCAODC_05115 rep DNA helicase Rep — —
Escherichia coli ECOR38 1.00 HEPCGN_17015 pnp polyribonucleotide nucleotidyltransferase 1.00 HEPCGN_13320 rep DNA helicase Rep — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS18175 polyribonucleotide nucleotidyltransferase 0.99 ECOLIN_RS21690 DNA helicase Rep low > 52
Escherichia coli ECOR27 1.00 NOLOHH_09940 pnp polyribonucleotide nucleotidyltransferase 1.00 NOLOHH_06745 rep DNA helicase Rep — —
Escherichia coli ECRC98 1.00 JDDGAC_21765 pnp polyribonucleotide nucleotidyltransferase 0.99 JDDGAC_18230 rep DNA helicase Rep — —
Escherichia coli ECRC99 1.00 KEDOAH_10010 pnp polyribonucleotide nucleotidyltransferase 0.99 KEDOAH_13540 rep DNA helicase Rep — —
Escherichia coli ECRC62 1.00 BNILDI_01595 pnp polyribonucleotide nucleotidyltransferase 1.00 BNILDI_04780 rep DNA helicase Rep — —
Escherichia coli ECRC102 1.00 NIAGMN_15900 pnp polyribonucleotide nucleotidyltransferase 0.99 NIAGMN_12365 rep DNA helicase Rep — —
Escherichia coli ECRC101 1.00 OKFHMN_18140 pnp polyribonucleotide nucleotidyltransferase 0.99 OKFHMN_14610 rep DNA helicase Rep — —
Escherichia fergusonii Becca 1.00 EFB2_00659 Polyribonucleotide nucleotidyltransferase 0.97 EFB2_04860 ATP-dependent DNA helicase Rep — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.96 GFF1502 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.96 GFF2894 ATP-dependent DNA helicase Rep — —
Enterobacter sp. TBS_079 0.95 MPMX20_04068 Polyribonucleotide nucleotidyltransferase 0.94 MPMX20_04494 ATP-dependent DNA helicase Rep — —
Enterobacter asburiae PDN3 0.95 EX28DRAFT_3213 polyribonucleotide nucleotidyltransferase 0.93 EX28DRAFT_4449 ATP-dependent DNA helicase Rep (EC 3.6.1.-) — —
Klebsiella michiganensis M5al 0.94 BWI76_RS25065 polyribonucleotide nucleotidyltransferase 0.93 BWI76_RS01020 DNA helicase Rep — —
Erwinia tracheiphila SCR3 0.91 LU632_RS21040 pnp polyribonucleotide nucleotidyltransferase 0.86 LU632_RS24280 rep DNA helicase Rep — —
Pantoea sp. MT58 0.90 IAI47_17005 polyribonucleotide nucleotidyltransferase 0.85 IAI47_18545 DNA helicase Rep — —
Dickeya dadantii 3937 0.89 DDA3937_RS03090 polyribonucleotide nucleotidyltransferase 0.87 DDA3937_RS20105 DNA helicase Rep — —
Serratia liquefaciens MT49 0.89 IAI46_01955 polyribonucleotide nucleotidyltransferase 0.87 IAI46_00565 DNA helicase Rep — —
Rahnella sp. WP5 0.89 EX31_RS08520 polyribonucleotide nucleotidyltransferase 0.85 EX31_RS15030 DNA helicase Rep — —
Dickeya dianthicola ME23 0.89 DZA65_RS03255 polyribonucleotide nucleotidyltransferase 0.85 DZA65_RS21290 DNA helicase Rep — —
Dickeya dianthicola 67-19 0.88 HGI48_RS03260 polyribonucleotide nucleotidyltransferase 0.85 HGI48_RS20245 DNA helicase Rep — —
Pectobacterium carotovorum WPP14 0.88 HER17_RS18190 polyribonucleotide nucleotidyltransferase 0.87 HER17_RS01120 DNA helicase Rep — —
Vibrio cholerae E7946 ATCC 55056 0.77 CSW01_03410 polyribonucleotide nucleotidyltransferase 0.71 CSW01_00865 DNA helicase Rep — —
Shewanella amazonensis SB2B 0.73 Sama_0966 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.66 Sama_3266 ATP-dependent DNA helicase Rep (RefSeq) — —
Shewanella loihica PV-4 0.73 Shew_2822 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.66 Shew_0305 ATP-dependent DNA helicase Rep (RefSeq) — —
Shewanella sp. ANA-3 0.72 Shewana3_1035 polynucleotide phosphorylase/polyadenylase (RefSeq) 0.66 Shewana3_0374 ATP-dependent DNA helicase Rep (RefSeq) — —
Shewanella oneidensis MR-1 0.71 SO1209 pnp polyribonucleotide nucleotidyltransferase (NCBI ptt file) 0.65 SO4325 rep ATP-dependent DNA helicase Rep (NCBI ptt file) — —
Alteromonas macleodii MIT1002 0.71 MIT1002_01888 Polyribonucleotide nucleotidyltransferase 0.65 MIT1002_00071 ATP-dependent DNA helicase rep — —
Dechlorosoma suillum PS 0.66 Dsui_2718 polyribonucleotide nucleotidyltransferase 0.45 Dsui_0933 DNA/RNA helicase, superfamily I — —
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_0104 polyribonucleotide nucleotidyltransferase 0.55 B158DRAFT_0352 ATP-dependent DNA helicase Rep (EC 3.6.1.-) — —
Herbaspirillum seropedicae SmR1 0.65 HSERO_RS08755 polynucleotide phosphorylase/polyadenylase 0.42 HSERO_RS21590 ATP-dependent DNA helicase Rep — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.65 GFF3677 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.35 GFF1778 ATP-dependent DNA helicase Rep — —
Variovorax sp. SCN45 0.65 GFF4746 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.38 GFF5842 ATP-dependent DNA helicase Rep — —
Acidovorax sp. GW101-3H11 0.64 Ac3H11_1456 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.35 Ac3H11_866 ATP-dependent DNA helicase Rep — —
Paraburkholderia bryophila 376MFSha3.1 0.64 H281DRAFT_04562 polyribonucleotide nucleotidyltransferase 0.42 H281DRAFT_02416 ATP-dependent DNA helicase Rep — —
Paraburkholderia graminis OAS925 0.64 ABIE53_001586 polyribonucleotide nucleotidyltransferase 0.42 ABIE53_000233 ATP-dependent DNA helicase Rep — —
Variovorax sp. OAS795 0.64 ABID97_RS20520 polyribonucleotide nucleotidyltransferase 0.36 ABID97_RS05510 UvrD-helicase domain-containing protein — —
Burkholderia phytofirmans PsJN 0.64 BPHYT_RS06600 polynucleotide phosphorylase/polyadenylase 0.42 BPHYT_RS19305 ATP-dependent DNA helicase Rep low > 109
Paraburkholderia sabiae LMG 24235 0.64 QEN71_RS24175 polyribonucleotide nucleotidyltransferase 0.42 QEN71_RS29185 UvrD-helicase domain-containing protein — —
Marinobacter adhaerens HP15 0.63 HP15_3063 polynucleotide phosphorylase/polyadenylase 0.50 HP15_214 DNA helicase, ATP-dependent, RepA type — —
Dyella japonica UNC79MFTsu3.2 0.62 ABZR86_RS06005 polyribonucleotide nucleotidyltransferase 0.41 ABZR86_RS16790 UvrD-helicase domain-containing protein — —
Rhodanobacter denitrificans MT42 0.62 LRK55_RS00800 polyribonucleotide nucleotidyltransferase 0.41 LRK55_RS10435 UvrD-helicase domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.62 LRK54_RS01025 polyribonucleotide nucleotidyltransferase 0.41 LRK54_RS10795 UvrD-helicase domain-containing protein — —
Xanthomonas campestris pv. campestris strain 8004 0.62 Xcc-8004.2006.1 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.39 Xcc-8004.5266.1 ATP-dependent DNA helicase Rep — —
Ralstonia solanacearum GMI1000 0.62 RS_RS10375 polyribonucleotide nucleotidyltransferase 0.41 RS_RS16480 ATP-dependent DNA helicase Rep low > 80
Castellaniella sp019104865 MT123 0.62 ABCV34_RS01240 polyribonucleotide nucleotidyltransferase 0.38 ABCV34_RS11065 UvrD-helicase domain-containing protein — —
Rhodanobacter sp. FW510-T8 0.62 OKGIIK_05870 pnp polyribonucleotide nucleotidyltransferase 0.41 OKGIIK_13085 rep ATP-dependent DNA helicase Rep — —
Cupriavidus basilensis FW507-4G11 0.62 RR42_RS05485 polynucleotide phosphorylase/polyadenylase 0.42 RR42_RS20055 ATP-dependent DNA helicase Rep low > 128
Pseudomonas sp. S08-1 0.62 OH686_17165 polyribonucleotide nucleotidyltransferase 0.51 OH686_13715 ATP-dependent DNA helicase Rep — —
Pseudomonas putida KT2440 0.62 PP_4708 Polyribonucleotide nucleotidyltransferase 0.52 PP_5264 helicase a single-stranded DNA dependent ATPase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.53 Psyr_0075 ATP-dependent DNA helicase Rep — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_4176 Polyribonucleotide nucleotidyltransferase 0.53 Psyr_0075 ATP-dependent DNA helicase Rep — —
Pseudomonas sp. RS175 0.61 PFR28_00094 Polyribonucleotide nucleotidyltransferase 0.51 PFR28_04392 ATP-dependent DNA helicase Rep — —
Ralstonia solanacearum PSI07 0.61 RPSI07_RS14305 polyribonucleotide nucleotidyltransferase 0.41 RPSI07_RS08600 ATP-dependent DNA helicase Rep low > 81
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_1156 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.52 Pf1N1B4_2151 ATP-dependent DNA helicase Rep — —
Pseudomonas stutzeri RCH2 0.61 Psest_0986 polyribonucleotide nucleotidyltransferase 0.52 Psest_3778 ATP-dependent DNA helicase Rep — —
Ralstonia solanacearum UW163 0.61 UW163_RS10720 polyribonucleotide nucleotidyltransferase 0.41 UW163_RS04975 ATP-dependent DNA helicase Rep — —
Ralstonia solanacearum IBSBF1503 0.61 RALBFv3_RS03005 polyribonucleotide nucleotidyltransferase 0.41 RALBFv3_RS08635 ATP-dependent DNA helicase Rep 0.24 74
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_05540 polyribonucleotide nucleotidyltransferase 0.52 AO353_09120 ATP-dependent DNA helicase Rep — —
Pseudomonas fluorescens FW300-N2C3 0.61 AO356_07390 polyribonucleotide nucleotidyltransferase 0.52 AO356_12655 ATP-dependent DNA helicase Rep — —
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_3349 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.52 Pf6N2E2_4398 ATP-dependent DNA helicase Rep — —
Ralstonia sp. UNC404CL21Col 0.61 ABZR87_RS14910 polyribonucleotide nucleotidyltransferase 0.41 ABZR87_RS03915 UvrD-helicase domain-containing protein low > 80
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_5084 Polyribonucleotide nucleotidyltransferase (EC 2.7.7.8) 0.52 PfGW456L13_819 ATP-dependent DNA helicase Rep — —
Lysobacter sp. OAE881 0.60 ABIE51_RS08415 polyribonucleotide nucleotidyltransferase 0.36 ABIE51_RS00370 UvrD-helicase domain-containing protein — —
Acinetobacter radioresistens SK82 0.59 MPMX26_00275 Polyribonucleotide nucleotidyltransferase 0.49 MPMX26_02416 ATP-dependent DNA helicase Rep — —
Pseudomonas fluorescens SBW25-INTG 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.52 PFLU_RS29345 DNA helicase Rep — —
Pseudomonas fluorescens SBW25 0.59 PFLU_RS25790 polyribonucleotide nucleotidyltransferase 0.52 PFLU_RS29345 DNA helicase Rep — —
Pseudomonas simiae WCS417 0.59 PS417_23950 polynucleotide phosphorylase/polyadenylase 0.52 PS417_27670 ATP-dependent DNA helicase Rep — —

Not shown: 31 genomes with orthologs for b3164 only; 0 genomes with orthologs for b3778 only