Conservation of cofitness between b2498 and b3778 in Escherichia coli BW25113

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Escherichia coli BW25113 1.0 b2498 upp uracil phosphoribosyltransferase (VIMSS) 1.0 b3778 rep DNA helicase and single-stranded DNA-dependent ATPase (NCBI) 0.27 1
Escherichia coli ECRC101 1.00 OKFHMN_21815 upp uracil phosphoribosyltransferase 0.99 OKFHMN_14610 rep DNA helicase Rep — —
Escherichia coli ECRC101 1.00 MCAODC_12345 upp uracil phosphoribosyltransferase 0.99 MCAODC_05115 rep DNA helicase Rep — —
Escherichia coli ECRC98 1.00 JDDGAC_25760 upp uracil phosphoribosyltransferase 0.99 JDDGAC_18230 rep DNA helicase Rep — —
Escherichia coli BL21 1.00 ECD_02390 uracil phosphoribosyltransferase 1.00 ECD_03656 DNA helicase and single-stranded DNA-dependent ATPase — —
Escherichia coli ECOR27 1.00 NOLOHH_13465 upp uracil phosphoribosyltransferase 1.00 NOLOHH_06745 rep DNA helicase Rep — —
Escherichia coli ECRC102 1.00 NIAGMN_19585 upp uracil phosphoribosyltransferase 0.99 NIAGMN_12365 rep DNA helicase Rep — —
Escherichia coli ECOR38 1.00 HEPCGN_20980 upp uracil phosphoribosyltransferase 1.00 HEPCGN_13320 rep DNA helicase Rep low > 85
Escherichia fergusonii Becca 1.00 EFB2_01400 Uracil phosphoribosyltransferase 0.97 EFB2_04860 ATP-dependent DNA helicase Rep — —
Escherichia coli Nissle 1917 1.00 ECOLIN_RS14185 uracil phosphoribosyltransferase 0.99 ECOLIN_RS21690 DNA helicase Rep low > 52
Escherichia coli ECRC99 1.00 KEDOAH_06405 upp uracil phosphoribosyltransferase 0.99 KEDOAH_13540 rep DNA helicase Rep — —
Escherichia coli HS(pFamp)R (ATCC 700891) 1.00 OHPLBJKB_01228 Uracil phosphoribosyltransferase 1.00 OHPLBJKB_04276 ATP-dependent DNA helicase Rep low > 73
Escherichia coli ECRC62 1.00 BNILDI_12275 upp uracil phosphoribosyltransferase 1.00 BNILDI_04780 rep DNA helicase Rep — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.99 GFF2171 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.96 GFF2894 ATP-dependent DNA helicase Rep — —
Klebsiella michiganensis M5al 0.96 BWI76_RS20945 uracil phosphoribosyltransferase 0.93 BWI76_RS01020 DNA helicase Rep — —
Enterobacter sp. TBS_079 0.96 MPMX20_03352 Uracil phosphoribosyltransferase 0.94 MPMX20_04494 ATP-dependent DNA helicase Rep — —
Enterobacter asburiae PDN3 0.96 EX28DRAFT_0170 uracil phosphoribosyltransferase (EC 2.4.2.9) 0.93 EX28DRAFT_4449 ATP-dependent DNA helicase Rep (EC 3.6.1.-) — —
Dickeya dianthicola 67-19 0.95 HGI48_RS06075 uracil phosphoribosyltransferase 0.85 HGI48_RS20245 DNA helicase Rep — —
Dickeya dianthicola ME23 0.95 DZA65_RS06425 uracil phosphoribosyltransferase 0.85 DZA65_RS21290 DNA helicase Rep — —
Dickeya dadantii 3937 0.95 DDA3937_RS06030 uracil phosphoribosyltransferase 0.87 DDA3937_RS20105 DNA helicase Rep — —
Pantoea sp. MT58 0.95 IAI47_05185 uracil phosphoribosyltransferase 0.85 IAI47_18545 DNA helicase Rep — —
Pectobacterium carotovorum WPP14 0.94 HER17_RS15460 uracil phosphoribosyltransferase 0.87 HER17_RS01120 DNA helicase Rep — —
Rahnella sp. WP5 0.94 EX31_RS22700 uracil phosphoribosyltransferase 0.85 EX31_RS15030 DNA helicase Rep — —
Serratia liquefaciens MT49 0.94 IAI46_18880 uracil phosphoribosyltransferase 0.87 IAI46_00565 DNA helicase Rep — —
Erwinia tracheiphila SCR3 0.93 LU632_RS08280 upp uracil phosphoribosyltransferase 0.86 LU632_RS24280 rep DNA helicase Rep — —
Shewanella loihica PV-4 0.89 Shew_1514 upp uracil phosphoribosyltransferase (RefSeq) 0.66 Shew_0305 ATP-dependent DNA helicase Rep (RefSeq) — —
Vibrio cholerae E7946 ATCC 55056 0.89 CSW01_11345 uracil phosphoribosyltransferase 0.71 CSW01_00865 DNA helicase Rep — —
Shewanella amazonensis SB2B 0.88 Sama_2096 upp uracil phosphoribosyltransferase (RefSeq) 0.66 Sama_3266 ATP-dependent DNA helicase Rep (RefSeq) — —
Shewanella sp. ANA-3 0.88 Shewana3_2544 upp uracil phosphoribosyltransferase (RefSeq) 0.66 Shewana3_0374 ATP-dependent DNA helicase Rep (RefSeq) — —
Shewanella oneidensis MR-1 0.88 SO2759 upp uracil phosphoribosyltransferase (NCBI ptt file) 0.65 SO4325 rep ATP-dependent DNA helicase Rep (NCBI ptt file) — —
Dechlorosoma suillum PS 0.75 Dsui_2333 uracil phosphoribosyltransferase 0.45 Dsui_0933 DNA/RNA helicase, superfamily I — —
Pseudomonas fluorescens FW300-N2E3 0.75 AO353_14855 uracil phosphoribosyltransferase 0.52 AO353_09120 ATP-dependent DNA helicase Rep — —
Pseudomonas syringae pv. syringae B728a 0.75 Psyr_0969 uracil phosphoribosyltransferase 0.53 Psyr_0075 ATP-dependent DNA helicase Rep — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.75 Psyr_0969 uracil phosphoribosyltransferase 0.53 Psyr_0075 ATP-dependent DNA helicase Rep — —
Pseudomonas sp. S08-1 0.74 OH686_17985 uracil phosphoribosyltransferase 0.51 OH686_13715 ATP-dependent DNA helicase Rep — —
Pseudomonas stutzeri RCH2 0.74 Psest_1120 uracil phosphoribosyltransferase 0.52 Psest_3778 ATP-dependent DNA helicase Rep — —
Pseudomonas fluorescens FW300-N1B4 0.74 Pf1N1B4_2934 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.52 Pf1N1B4_2151 ATP-dependent DNA helicase Rep — —
Pseudomonas fluorescens GW456-L13 0.74 PfGW456L13_1597 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.52 PfGW456L13_819 ATP-dependent DNA helicase Rep — —
Pseudomonas simiae WCS417 0.74 PS417_04435 uracil phosphoribosyltransferase 0.52 PS417_27670 ATP-dependent DNA helicase Rep — —
Pseudomonas fluorescens SBW25-INTG 0.74 PFLU_RS04485 uracil phosphoribosyltransferase 0.52 PFLU_RS29345 DNA helicase Rep — —
Pseudomonas fluorescens SBW25 0.74 PFLU_RS04485 uracil phosphoribosyltransferase 0.52 PFLU_RS29345 DNA helicase Rep — —
Dyella japonica UNC79MFTsu3.2 0.73 ABZR86_RS09615 uracil phosphoribosyltransferase 0.41 ABZR86_RS16790 UvrD-helicase domain-containing protein — —
Pseudomonas sp. RS175 0.73 PFR28_03641 Uracil phosphoribosyltransferase 0.51 PFR28_04392 ATP-dependent DNA helicase Rep — —
Pseudomonas putida KT2440 0.73 PP_0746 Uracil phosphoribosyltransferase 0.52 PP_5264 helicase a single-stranded DNA dependent ATPase — —
Pseudomonas fluorescens FW300-N2E2 0.73 Pf6N2E2_5235 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.52 Pf6N2E2_4398 ATP-dependent DNA helicase Rep — —
Pseudomonas fluorescens FW300-N2C3 0.73 AO356_16565 uracil phosphoribosyltransferase 0.52 AO356_12655 ATP-dependent DNA helicase Rep — —
Marinobacter adhaerens HP15 0.72 HP15_2306 uracil phosphoribosyltransferase 0.50 HP15_214 DNA helicase, ATP-dependent, RepA type — —
Lysobacter sp. OAE881 0.72 ABIE51_RS15050 uracil phosphoribosyltransferase 0.36 ABIE51_RS00370 UvrD-helicase domain-containing protein — —
Rhodanobacter denitrificans MT42 0.72 LRK55_RS02920 uracil phosphoribosyltransferase 0.41 LRK55_RS10435 UvrD-helicase domain-containing protein — —
Rhodanobacter denitrificans FW104-10B01 0.72 LRK54_RS03170 uracil phosphoribosyltransferase 0.41 LRK54_RS10795 UvrD-helicase domain-containing protein — —
Alteromonas macleodii MIT1002 0.72 MIT1002_02893 Uracil phosphoribosyltransferase 0.65 MIT1002_00071 ATP-dependent DNA helicase rep — —
Rhodanobacter sp. FW510-T8 0.71 OKGIIK_10040 upp uracil phosphoribosyltransferase 0.41 OKGIIK_13085 rep ATP-dependent DNA helicase Rep — —
Castellaniella sp019104865 MT123 0.71 ABCV34_RS15380 uracil phosphoribosyltransferase 0.38 ABCV34_RS11065 UvrD-helicase domain-containing protein low > 48
Xanthomonas campestris pv. campestris strain 8004 0.70 Xcc-8004.2160.1 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.39 Xcc-8004.5266.1 ATP-dependent DNA helicase Rep — —
Acinetobacter radioresistens SK82 0.67 MPMX26_02542 Uracil phosphoribosyltransferase 0.49 MPMX26_02416 ATP-dependent DNA helicase Rep — —
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS30815 uracil phosphoribosyltransferase 0.42 RR42_RS20055 ATP-dependent DNA helicase Rep low > 128
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2428 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.35 Ac3H11_866 ATP-dependent DNA helicase Rep — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF1179 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.35 GFF1778 ATP-dependent DNA helicase Rep low > 90
Variovorax sp. OAS795 0.51 ABID97_RS16850 uracil phosphoribosyltransferase 0.36 ABID97_RS05510 UvrD-helicase domain-containing protein — —
Variovorax sp. SCN45 0.50 GFF324 Uracil phosphoribosyltransferase (EC 2.4.2.9) 0.38 GFF5842 ATP-dependent DNA helicase Rep — —
Ralstonia solanacearum GMI1000 0.49 RS_RS10980 uracil phosphoribosyltransferase 0.41 RS_RS16480 ATP-dependent DNA helicase Rep low > 80
Ralstonia solanacearum UW163 0.49 UW163_RS10140 uracil phosphoribosyltransferase 0.41 UW163_RS04975 ATP-dependent DNA helicase Rep — —
Ralstonia solanacearum IBSBF1503 0.49 RALBFv3_RS03530 uracil phosphoribosyltransferase 0.41 RALBFv3_RS08635 ATP-dependent DNA helicase Rep low > 76
Ralstonia solanacearum PSI07 0.49 RPSI07_RS13695 uracil phosphoribosyltransferase 0.41 RPSI07_RS08600 ATP-dependent DNA helicase Rep low > 81
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS24390 uracil phosphoribosyltransferase 0.42 QEN71_RS29185 UvrD-helicase domain-containing protein low > 153
Paraburkholderia graminis OAS925 0.48 ABIE53_001547 uracil phosphoribosyltransferase 0.42 ABIE53_000233 ATP-dependent DNA helicase Rep — —
Burkholderia phytofirmans PsJN 0.48 BPHYT_RS06415 uracil phosphoribosyltransferase 0.42 BPHYT_RS19305 ATP-dependent DNA helicase Rep low > 109
Paraburkholderia bryophila 376MFSha3.1 0.47 H281DRAFT_04523 uracil phosphoribosyltransferase 0.42 H281DRAFT_02416 ATP-dependent DNA helicase Rep — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS15395 uracil phosphoribosyltransferase 0.41 ABZR87_RS03915 UvrD-helicase domain-containing protein low > 80
Herbaspirillum seropedicae SmR1 0.47 HSERO_RS03500 uracil phosphoribosyltransferase 0.42 HSERO_RS21590 ATP-dependent DNA helicase Rep low > 78

Not shown: 29 genomes with orthologs for b2498 only; 1 genomes with orthologs for b3778 only