Homologs of Psyr_0362 from Pseudomonas syringae pv. syringae B728a

Sigma-70 region 2
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas syringae pv. syringae B728a Psyr_0362 Sigma-70 region 2 insig. 100 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0362 Sigma-70 region 2 insig. 100 100
o Pseudomonas segetis P6 MPMX49_01358 ECF RNA polymerase sigma factor SigK insig. 65 100
o Pseudomonas simiae WCS417 PS417_12610 RNA polymerase sigma factor sig. 65 97
o Pseudomonas fluorescens SBW25 PFLU_RS13305 sigma-70 family RNA polymerase sigma factor insig. 65 96
o Pseudomonas fluorescens SBW25-INTG PFLU_RS13305 sigma-70 family RNA polymerase sigma factor sig. 65 96
o Pseudomonas orientalis W4I3 QF045_RS17270 sigma-70 family RNA polymerase sigma factor insig. 61 98
o Pseudomonas sp. DMC3 GFF1392 ECF RNA polymerase sigma factor SigK cofit 64 100
o Pseudomonas putida KT2440 PP_3006 RNA polymerase sigma-70 factor, ECF subfamily insig. 57 99
o Pseudomonas sp. BP01 JOY50_RS12975 sigma-70 family RNA polymerase sigma factor insig. 56 99
o Variovorax sp. SCN45 GFF4503 RNA polymerase sigma factor insig. 54 97
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF365 RNA polymerase sigma factor insig. 48 96
o Agrobacterium fabrum C58 Atu0474 putative RNA polymerase sigma-70 factor insig. 44 95
o Marinobacter adhaerens HP15 HP15_p187g100 RNA polymerase sigma factor insig. 42 99
o Bosea sp. OAE506 ABIE41_RS11620 sigma-70 family RNA polymerase sigma factor insig. 45 96
o Sphingomonas koreensis DSMZ 15582 Ga0059261_1715 RNA polymerase sigma factor, sigma-70 family insig. 36 94
  Marinobacter adhaerens HP15 HP15_3899 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 34 93
o Alteromonas macleodii MIT1002 MIT1002_03202 Sigma-K factor insig. 34 98
o Ralstonia solanacearum PSI07 RPSI07_RS13090 DNA-directed RNA polymerase sigma-70 factor insig. 36 94
o Rhodopseudomonas palustris CGA009 TX73_008400 sigma-70 family RNA polymerase sigma factor insig. 34 93
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3601.1 RNA polymerase sigma-70 factor insig. 35 93
o Rhizobium sp. OAE497 ABIE40_RS01975 sigma-70 family RNA polymerase sigma factor insig. 35 90
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS01495 sigma-70 family RNA polymerase sigma factor insig. 33 99
o Rhodanobacter sp. FW510-T8 OKGIIK_05040 RNA polymerase subunit sigma insig. 33 90
o Burkholderia phytofirmans PsJN BPHYT_RS21845 hypothetical protein insig. 36 92
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01465 RNA polymerase sigma-70 factor, ECF subfamily insig. 35 93
o Enterobacter asburiae PDN3 EX28DRAFT_2390 RNA polymerase sigma factor, sigma-70 family cofit 35 93
o Rahnella sp. WP5 EX31_RS18905 sigma-70 family RNA polymerase sigma factor insig. 31 93
o Pantoea agglomerans CFBP13505 P0401 PagCFBP13505_RS08045 sigma-70 family RNA polymerase sigma factor cofit 37 93
o Kangiella aquimarina DSM 16071 B158DRAFT_0930 RNA polymerase sigma factor, sigma-70 family insig. 30 94
o Acidovorax sp. GW101-3H11 Ac3H11_1622 RNA polymerase sigma factor insig. 38 93
o Pantoea sp. MT58 IAI47_19735 sigma-70 family RNA polymerase sigma factor insig. 36 93
o Ralstonia solanacearum GMI1000 RS_RS11855 DNA-directed RNA polymerase sigma-70 factor insig. 34 96
  Pseudomonas orientalis W4I3 QF045_RS00535 sigma-70 family RNA polymerase sigma factor cofit 33 93
  Marinobacter adhaerens HP15 HP15_950 RNA polymerase, sigma-24 subunit, ECF subfamily insig. 31 91
o Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 32 94
  Pseudomonas fluorescens SBW25 PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 32 93
  Pseudomonas fluorescens SBW25-INTG PFLU_RS16335 sigma-70 family RNA polymerase sigma factor insig. 32 93
o Variovorax sp. OAS795 ABID97_RS08165 sigma-70 family RNA polymerase sigma factor insig. 34 94
o Cupriavidus basilensis FW507-4G11 RR42_RS15915 RNA polymerase subunit sigma-24 insig. 33 92
  Variovorax sp. SCN45 GFF3817 RNA polymerase sigma factor insig. 37 89
  Agrobacterium fabrum C58 Atu1982 sigma factor insig. 32 89
  Acidovorax sp. GW101-3H11 Ac3H11_1599 RNA polymerase sigma factor insig. 30 95
o Pseudomonas fluorescens FW300-N2E3 AO353_07625 RNA polymerase subunit sigma-70 insig. 32 93
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 33 90
o Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 33 90
  Burkholderia phytofirmans PsJN BPHYT_RS22710 XRE family transcriptional regulator sig. 31 93
o Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS18855 RNA polymerase sigma factor insig. 29 93
o Cellulophaga baltica 18 M666_RS08870 RNA polymerase sigma factor insig. 32 89
o Mycobacterium tuberculosis H37Rv Rv0445c Alternative RNA polymerase sigma factor SigK insig. 27 95
o Pedobacter sp. GW460-11-11-14-LB5 CA265_RS24900 RNA polymerase subunit sigma-70 insig. 28 91
  Rhodopseudomonas palustris CGA009 TX73_002850 sigma-70 family RNA polymerase sigma factor insig. 29 93
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_02680 RNA polymerase subunit sigma-70 insig. 31 88
o Bacteroides ovatus ATCC 8483 BACOVA_02037 RNA polymerase sigma-70 factor insig. 30 100
  Bosea sp. OAE506 ABIE41_RS10280 sigma-70 family RNA polymerase sigma factor insig. 29 94
o Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4608 RNA polymerase sigma factor, sigma-70 family insig. 29 89
  Rhodospirillum rubrum S1H Rru_A0722 Sigma-24 (FecI) (NCBI) insig. 29 96
  Phaeobacter inhibens DSM 17395 PGA1_c27510 'RNA polymerase sigma factor (sigma-70 family; ECF11 subgroup)' insig. 30 87
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12885 RNA polymerase insig. 23 96
  Alteromonas macleodii MIT1002 MIT1002_02682 Sigma-W factor strong 30 87
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0358 RNA polymerase sigma factor, sigma-70 family strong 28 93
  Cellulophaga baltica 18 M666_RS05270 sigma-70 family RNA polymerase sigma factor insig. 29 93
  Rhodopseudomonas palustris CGA009 TX73_024905 sigma-70 family RNA polymerase sigma factor insig. 31 87
  Bacteroides ovatus ATCC 8483 BACOVA_00098 RNA polymerase sigma-70 factor insig. 27 93
  Bacteroides thetaiotaomicron VPI-5482 BT1572 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 30 75
  Caulobacter crescentus NA1000 CCNA_00685 RNA polymerase sigma factor sig. 28 87
  Caulobacter crescentus NA1000 Δfur CCNA_00685 RNA polymerase sigma factor cofit 28 87
  Rhodanobacter denitrificans MT42 LRK55_RS07240 sigma-70 family RNA polymerase sigma factor insig. 27 89
  Azospirillum brasilense Sp245 AZOBR_RS00810 RNA polymerase sigma factor RpoE insig. 28 95
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07500 sigma-70 family RNA polymerase sigma factor insig. 27 89
  Bacteroides ovatus ATCC 8483 BACOVA_04312 Sigma-70 region 2 insig. 30 75
  Azospirillum sp. SherDot2 MPMX19_05229 ECF RNA polymerase sigma factor RpoE insig. 27 89
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS15905 RNA polymerase sigma factor cofit 27 91
  Dinoroseobacter shibae DFL-12 Dshi_0366 RNA polymerase, sigma-24 subunit, ECF subfamily (RefSeq) insig. 30 88
  Pseudomonas syringae pv. syringae B728a Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 26 90
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_0892 Sigma-70 region 2:Sigma-70 region 4 insig. 26 90
  Synechococcus elongatus PCC 7942 Synpcc7942_2004 sigI RNA polymerase sigma factor insig. 28 90
  Rhodanobacter sp. FW510-T8 OKGIIK_13920 RNA polymerase subunit sigma insig. 26 91
  Variovorax sp. OAS795 ABID97_RS21865 sigma-70 family RNA polymerase sigma factor insig. 30 92
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 27 98
  Azospirillum brasilense Sp245 AZOBR_RS21190 RNA polymerase sigma factor RpoE insig. 29 89
  Azospirillum sp. SherDot2 MPMX19_02022 ECF RNA polymerase sigma factor RpoE insig. 29 89
  Rhizobium sp. OAE497 ABIE40_RS26955 sigma-70 family RNA polymerase sigma factor insig. 27 91
  Rhodopseudomonas palustris CGA009 TX73_009355 sigma-70 family RNA polymerase sigma factor insig. 27 100
o Castellaniella sp019104865 MT123 ABCV34_RS04710 sigma factor insig. 26 97
  Azospirillum sp. SherDot2 MPMX19_05742 hypothetical protein insig. 28 94
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS05845 sigma-70 family RNA polymerase sigma factor insig. 31 74
  Shewanella loihica PV-4 Shew_1476 RNA polymerase sigma factor (RefSeq) insig. 25 89
  Cellulophaga baltica 18 M666_RS18525 RNA polymerase sigma factor insig. 24 86
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 26 99
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_4578 RNA polymerase sigma factor, sigma-70 family insig. 25 94
  Lysobacter sp. OAE881 ABIE51_RS16295 sigma-70 family RNA polymerase sigma factor insig. 30 91
  Rhodanobacter sp. FW510-T8 OKGIIK_07900 rpoE RNA polymerase sigma factor RpoE strong 28 94
  Phocaeicola dorei CL03T12C01 ABI39_RS07815 RNA polymerase sigma factor strong 30 75
  Mycobacterium tuberculosis H37Rv Rv0735 Probable alternative RNA polymerase sigma factor SigL insig. 30 87
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS07720 sigma-70 family RNA polymerase sigma factor strong 28 90
  Rhizobium sp. OAE497 ABIE40_RS18210 sigma-70 family RNA polymerase sigma factor insig. 29 95
  Bosea sp. OAE506 ABIE41_RS07610 sigma-70 family RNA polymerase sigma factor insig. 28 87
  Phocaeicola dorei CL03T12C01 ABI39_RS00235 sigma-70 family RNA polymerase sigma factor sig. 27 90
  Herbaspirillum seropedicae SmR1 HSERO_RS12085 RNA polymerase sigma-E factor protein insig. 27 86