Homologs of PP_1191 from Pseudomonas putida KT2440

S4 domain protein
SEED: tRNA pseudouridine synthase A (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase F

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Pseudomonas putida KT2440 PP_1191 S4 domain protein insig. 100 100
o Pseudomonas fluorescens GW456-L13 PfGW456L13_4655 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 58 100
o Pseudomonas sp. RS175 PFR28_00484 Dual-specificity RNA pseudouridine synthase RluF insig. 59 100
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_3158 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 56 100
o Pseudomonas fluorescens FW300-N2C3 AO356_05610 RNA-binding protein insig. 57 100
o Pseudomonas fluorescens SBW25 PFLU_RS05940 RNA-binding protein S4 insig. 56 100
o Pseudomonas fluorescens SBW25-INTG PFLU_RS05940 RNA-binding protein S4 insig. 56 100
o Pseudomonas simiae WCS417 PS417_05870 RNA-binding protein S4 insig. 56 100
o Pseudomonas fluorescens FW300-N2E3 AO353_16865 RNA-binding protein insig. 56 100
o Pseudomonas syringae pv. syringae B728a Psyr_1390 RNA-binding S4 insig. 53 100
o Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1390 RNA-binding S4 insig. 53 100
o Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2980 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 56 90
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS18320 rRNA pseudouridine synthase insig. 50 100
o Lysobacter sp. OAE881 ABIE51_RS13020 rRNA pseudouridine synthase insig. 51 100
o Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1469.1 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 49 100
o Rhodanobacter sp. FW510-T8 OKGIIK_04535 rsuA RNA-binding protein insig. 49 100
o Rhodanobacter denitrificans MT42 LRK55_RS15640 rRNA pseudouridine synthase cofit 49 100
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS15885 rRNA pseudouridine synthase insig. 49 100
o Pseudomonas sp. S08-1 OH686_05400 Pseudouridine synthase insig. 47 100
o Pseudomonas stutzeri RCH2 Psest_2917 16S rRNA uridine-516 pseudouridylate synthase and related pseudouridylate synthases insig. 47 100
o Acidovorax sp. GW101-3H11 Ac3H11_1984 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 45 98
o Variovorax sp. OAS795 ABID97_RS06090 RNA pseudouridine synthase cofit 45 99
o Variovorax sp. SCN45 GFF4531 Pseudouridine synthase insig. 44 99
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF631 tRNA pseudouridine synthase A (EC 4.2.1.70) insig. 43 99
  Dechlorosoma suillum PS Dsui_2759 pseudouridine synthase family protein insig. 38 100
o Burkholderia phytofirmans PsJN BPHYT_RS12155 RNA-binding protein S4 insig. 36 98
o Castellaniella sp019104865 MT123 ABCV34_RS03070 pseudouridine synthase insig. 36 99
o Herbaspirillum seropedicae SmR1 HSERO_RS10860 RNA pseudouridylate synthase insig. 38 100
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_00606 23S rRNA pseudouridine2604 synthase insig. 35 93
  Paraburkholderia graminis OAS925 ABIE53_002509 23S rRNA pseudouridine2604 synthase insig. 37 98
  Ralstonia solanacearum PSI07 RPSI07_RS17115 16S rRNA uridine-516 pseudouridylate synthase cofit 37 98
  Ralstonia solanacearum GMI1000 RS_RS07030 16S rRNA uridine-516 pseudouridylate synthase sig. 36 98
  Acidovorax sp. GW101-3H11 Ac3H11_4641 tRNA pseudouridine synthase A (EC 4.2.1.70) sig. 33 98
  Variovorax sp. SCN45 GFF3530 Pseudouridine synthase insig. 31 100
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS00360 16S rRNA pseudouridylate synthase insig. 37 98
  Ralstonia solanacearum UW163 UW163_RS13690 16S rRNA pseudouridylate synthase insig. 37 98
  Variovorax sp. OAS795 ABID97_RS00980 pseudouridine synthase strong 31 99
  Cupriavidus basilensis FW507-4G11 RR42_RS11890 16S rRNA pseudouridylate synthase insig. 34 98
  Ralstonia sp. UNC404CL21Col ABZR87_RS11810 pseudouridine synthase insig. 37 98
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF343 tRNA pseudouridine synthase A (EC 4.2.1.70) cofit 33 98
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS07850 pseudouridine synthase insig. 30 99
  Vibrio cholerae E7946 ATCC 55056 CSW01_11335 23S rRNA pseudouridine(2604) synthase RluF insig. 29 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08925 23S rRNA pseudouridine synthase F insig. 27 98
  Caulobacter crescentus NA1000 CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 30 99
  Caulobacter crescentus NA1000 Δfur CCNA_00898 ribosomal large subunit pseudouridine synthase F cofit 30 99
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_08930 hypothetical protein insig. 29 98
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_1010 pseudouridine synthase insig. 24 98
  Marinobacter adhaerens HP15 HP15_886 pseudouridine synthase family 1 protein insig. 29 97
  Paraburkholderia sabiae LMG 24235 QEN71_RS06405 pseudouridine synthase cofit 34 98
  Lysobacter sp. OAE881 ABIE51_RS12720 pseudouridine synthase insig. 28 97
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.1843.1 Ribosomal small subunit pseudouridine synthase A (EC 4.2.1.70) insig. 26 97
  Erwinia tracheiphila SCR3 LU632_RS22175 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 27 99
  Enterobacter asburiae PDN3 EX28DRAFT_4322 pseudouridine synthase insig. 27 99
  Enterobacter sp. TBS_079 MPMX20_00237 Dual-specificity RNA pseudouridine synthase RluF insig. 26 99
  Pantoea sp. MT58 IAI47_19435 23S rRNA pseudouridine(2604) synthase RluF insig. 26 97
  Rahnella sp. WP5 EX31_RS06075 23S rRNA pseudouridine(2604) synthase RluF insig. 24 97
  Vibrio cholerae E7946 ATCC 55056 CSW01_08220 16S rRNA pseudouridine(516) synthase insig. 26 97
  Klebsiella michiganensis M5al BWI76_RS19810 16S rRNA pseudouridine(516) synthase no data 26 97
  Escherichia fergusonii Becca EFB2_04580 Dual-specificity RNA pseudouridine synthase RluF insig. 26 97
  Escherichia coli Nissle 1917 ECOLIN_RS23225 23S rRNA pseudouridine(2604) synthase RluF insig. 26 97
  Escherichia coli BL21 ECD_03894 23S rRNA pseudouridine(2604) synthase cofit 27 97
  Escherichia coli ECRC101 OKFHMN_13190 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 27 97
  Escherichia coli ECRC101 MCAODC_03690 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 27 97
  Escherichia coli ECRC102 NIAGMN_10940 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 27 97
  Escherichia coli ECRC62 BNILDI_06155 rluF 23S rRNA pseudouridine(2604) synthase RluF insig. 27 97
  Escherichia coli ECRC98 JDDGAC_16815 rluF 23S rRNA pseudouridine(2604) synthase RluF no data 27 97
  Escherichia coli ECRC99 KEDOAH_14970 rluF 23S rRNA pseudouridine(2604) synthase RluF no data 27 97
  Escherichia coli BW25113 b4022 yjbC 23S rRNA pseudouridine synthase (NCBI) sig. 27 97
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF1362 Ribosomal large subunit pseudouridine synthase F (EC 4.2.1.70) insig. 25 97
  Escherichia coli ECOR38 HEPCGN_11820 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 27 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_04027 23S rRNA pseudouridine(2604) synthase insig. 27 97
  Escherichia coli ECOR27 NOLOHH_05365 rluF 23S rRNA pseudouridine(2604) synthase RluF cofit 27 97
  Serratia liquefaciens MT49 IAI46_21130 23S rRNA pseudouridine(2604) synthase RluF insig. 25 99
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0719 pseudouridine synthase no data 23 99
  Ralstonia sp. UNC404CL21Col ABZR87_RS08605 pseudouridine synthase insig. 26 99
  Fusobacterium nucleatum SB010 HUW76_04625 rRNA pseudouridine synthase cofit 25 95
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS19110 23S rRNA pseudouridine synthase F insig. 24 97
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS11165 pseudouridine synthase no data 23 99
  Serratia liquefaciens MT49 IAI46_19150 23S rRNA pseudouridine(2604) synthase RluF insig. 24 98
  Alteromonas macleodii MIT1002 MIT1002_01776 Ribosomal large subunit pseudouridine synthase F insig. 25 99
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS00665 rRNA pseudouridine synthase insig. 26 95
  Escherichia coli ECOR38 HEPCGN_22625 rsuA 16S rRNA pseudouridine(516) synthase RsuA cofit 26 97
  Rhodanobacter denitrificans MT42 LRK55_RS00435 pseudouridine synthase insig. 26 95
  Rhodanobacter sp. FW510-T8 OKGIIK_06590 Pseudouridine synthase insig. 25 95
  Klebsiella michiganensis M5al BWI76_RS01755 23S rRNA pseudouridine synthase F insig. 25 97
  Enterobacter asburiae PDN3 EX28DRAFT_0378 pseudouridine synthase insig. 25 97
  Rhodanobacter denitrificans MT42 LRK55_RS06765 pseudouridine synthase insig. 24 97
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS07025 pseudouridine synthase insig. 24 97
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS08410 pseudouridine synthase insig. 26 95
  Escherichia coli BL21 ECD_02113 16S rRNA pseudouridine(516) synthase insig. 25 97
  Escherichia fergusonii Becca EFB2_01673 Ribosomal small subunit pseudouridine synthase A insig. 25 97
  Escherichia coli ECOR27 NOLOHH_14935 rsuA 16S rRNA pseudouridine(516) synthase RsuA no data 25 97
  Escherichia coli ECRC101 OKFHMN_23360 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 25 97
  Escherichia coli ECRC101 MCAODC_14410 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 25 97
  Escherichia coli ECRC102 NIAGMN_21125 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 25 97
  Escherichia coli ECRC62 BNILDI_13855 rsuA 16S rRNA pseudouridine(516) synthase RsuA insig. 25 97
  Escherichia coli ECRC98 JDDGAC_27320 rsuA 16S rRNA pseudouridine(516) synthase RsuA no data 25 97
  Escherichia coli ECRC99 KEDOAH_04825 rsuA 16S rRNA pseudouridine(516) synthase RsuA no data 25 97
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_01526 Ribosomal small subunit pseudouridine synthase A insig. 25 97
  Escherichia coli Nissle 1917 ECOLIN_RS12760 16S rRNA pseudouridine(516) synthase RsuA no data 25 97