Homologs of H281DRAFT_04550 from Paraburkholderia bryophila 376MFSha3.1

RNA polymerase, sigma-24 subunit, RpoE
SEED: DNA-directed RNA polymerase specialized sigma subunit, sigma24-like
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04550 RNA polymerase, sigma-24 subunit, RpoE strong 100 100
  Paraburkholderia graminis OAS925 ABIE53_001573 RNA polymerase sigma-70 factor (ECF subfamily) strong 98 100
o Burkholderia phytofirmans PsJN BPHYT_RS06540 RNA polymerase sigma70 factor strong 97 100
o Paraburkholderia sabiae LMG 24235 QEN71_RS24230 RNA polymerase sigma factor insig. 92 100
o Ralstonia solanacearum PSI07 RPSI07_RS14250 RNA polymerase sigma factor cofit 76 100
o Ralstonia solanacearum IBSBF1503 RALBFv3_RS03055 RNA polymerase sigma factor strong 74 100
o Ralstonia solanacearum UW163 UW163_RS10670 RNA polymerase sigma factor insig. 74 100
o Ralstonia sp. UNC404CL21Col ABZR87_RS14960 RNA polymerase sigma factor insig. 73 100
o Ralstonia solanacearum GMI1000 RS_RS10425 RNA polymerase sigma factor cofit 76 100
o Herbaspirillum seropedicae SmR1 HSERO_RS08645 RNA polymerase sigma70 factor sig. 73 100
o Dechlorosoma suillum PS Dsui_3530 DNA-directed RNA polymerase specialized sigma subunit, sigma24 insig. 72 100
o Cupriavidus basilensis FW507-4G11 RR42_RS05430 DNA-directed RNA polymerase sigma-70 factor strong 72 100
o Variovorax sp. OAS795 ABID97_RS14880 RNA polymerase sigma factor cofit 62 100
o Acidovorax sp. GW101-3H11 Ac3H11_524 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like cofit 59 99
o Variovorax sp. SCN45 GFF1157 DNA-directed RNA polymerase specialized sigma subunit, sigma24-like insig. 61 100
  Rhodanobacter sp. FW510-T8 OKGIIK_10685 rpoE RNA polymerase sigma factor cofit 46 89
o Rhodanobacter denitrificans MT42 LRK55_RS03585 RNA polymerase sigma factor strong 45 89
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS03835 RNA polymerase sigma factor strong 45 89
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS22130 RNA polymerase sigma factor insig. 45 89
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.4203.1 RNA polymerase sigma-54 factor RpoN insig. 42 89
o Lysobacter sp. OAE881 ABIE51_RS05545 RNA polymerase sigma factor insig. 40 94
  Acinetobacter radioresistens SK82 MPMX26_02199 hypothetical protein no data 36 80
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS16705 RNA polymerase sigma factor strong 27 97
  Azospirillum brasilense Sp245 AZOBR_RS30810 RNA polymerase sigma70 insig. 25 80
  Variovorax sp. OAS795 ABID97_RS28845 RNA polymerase sigma factor insig. 29 87
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 28 88
o Phocaeicola dorei CL03T12C01 ABI39_RS08670 RNA polymerase sigma-70 factor cofit 28 93
  Sphingomonas koreensis DSMZ 15582 Ga0059261_2952 RNA polymerase sigma factor, sigma-70 family strong 30 86
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 28 92
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11705 hypothetical protein insig. 25 93
  Castellaniella sp019104865 MT123 ABCV34_RS07155 RNA polymerase sigma factor insig. 29 89
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS12095 RNA polymerase subunit sigma-70 insig. 29 80
  Bacteroides ovatus ATCC 8483 BACOVA_00669 Sigma-70 region 2 insig. 27 84
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09420 RNA polymerase sigma factor sig. 25 74
  Pseudomonas simiae WCS417 PS417_06880 RNA polymerase sigma factor insig. 30 78
  Klebsiella michiganensis M5al BWI76_RS11395 RNA polymerase sigma factor FecI strong 27 88
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 31 97
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11995 RNA polymerase subunit sigma insig. 27 83
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS20645 RNA polymerase subunit sigma-70 insig. 22 95
  Acidovorax sp. GW101-3H11 Ac3H11_1573 RNA polymerase sigma factor RpoE no data 28 83
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS00795 sigma-70 family RNA polymerase sigma factor strong 26 74
  Sphingomonas koreensis DSMZ 15582 Ga0059261_0532 RNA polymerase sigma factor, sigma-70 family insig. 25 84
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS00655 RNA polymerase subunit sigma-24 strong 27 99
  Pseudomonas fluorescens FW300-N2C3 AO356_10740 RNA polymerase subunit sigma insig. 30 66
  Variovorax sp. SCN45 GFF5806 RNA polymerase ECF-type sigma factor insig. 27 88
  Magnetospirillum magneticum AMB-1 AMB_RS14160 RNA polymerase sigma factor cofit 25 98
  Burkholderia phytofirmans PsJN BPHYT_RS24975 RNA polymerase sigma24 factor strong 32 48
  Pseudomonas fluorescens SBW25 PFLU_RS06940 sigma-70 family RNA polymerase sigma factor insig. 29 77
  Pseudomonas fluorescens SBW25-INTG PFLU_RS06940 sigma-70 family RNA polymerase sigma factor sig. 29 77
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 29 80
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_3656 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 26 86
  Phocaeicola dorei CL03T12C01 ABI39_RS01635 RNA polymerase sigma-70 factor insig. 35 40
  Rhodanobacter denitrificans FW104-10B01 LRK54_RS09455 RNA polymerase sigma factor insig. 26 89
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS02390 RNA polymerase sigma-70 factor insig. 28 79
  Paraburkholderia graminis OAS925 ABIE53_002674 RNA polymerase sigma factor (sigma-70 family) insig. 38 34
  Variovorax sp. SCN45 GFF1525 RNA polymerase ECF-type sigma factor insig. 29 77
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_14945 RNA polymerase subunit sigma-24 strong 28 79
  Paraburkholderia sabiae LMG 24235 QEN71_RS18240 RNA polymerase sigma factor insig. 28 92
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS04750 RNA polymerase sigma-70 factor insig. 24 83
  Pseudomonas fluorescens SBW25 PFLU_RS00840 RNA polymerase sigma factor insig. 29 66
  Pseudomonas fluorescens SBW25-INTG PFLU_RS00840 RNA polymerase sigma factor sig. 29 66
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS15920 sigma-70 family RNA polymerase sigma factor insig. 26 85
  Variovorax sp. SCN45 GFF4658 KEGG: RNA polymerase sigma-70 factor, ECF subfamily insig. 27 90
  Mycobacterium tuberculosis H37Rv Rv3414c Probable alternative RNA polymerase sigma-D factor SigD sig. 33 51
  Pseudomonas simiae WCS417 PS417_00810 RNA polymerase sigma factor insig. 29 66
  Phocaeicola dorei CL03T12C01 ABI39_RS09110 RNA polymerase sigma-70 factor insig. 28 40
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 26 94
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_21 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis sig. 27 76
  Pseudomonas stutzeri RCH2 Psest_0650 RNA polymerase sigma factor, sigma-70 family insig. 32 76
  Sinorhizobium meliloti 1021 SMa0143 RNA polymerase ECF sigma factor insig. 29 84
  Burkholderia phytofirmans PsJN BPHYT_RS20215 RNA polymerase sigma 70 sig. 28 73
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 28 79
  Cupriavidus basilensis FW507-4G11 RR42_RS14080 RNA polymerase sigma factor RpoE strong 28 83
  Pseudomonas sp. RS175 PFR28_02867 putative RNA polymerase sigma factor FecI insig. 27 76
  Cupriavidus basilensis FW507-4G11 RR42_RS05810 RNA polymerase sigma factor insig. 27 68
  Bacteroides thetaiotaomicron VPI-5482 BT2044 RNA polymerase ECF-type sigma factor (NCBI ptt file) insig. 26 84
  Variovorax sp. OAS795 ABID97_RS21515 sigma-70 family RNA polymerase sigma factor no data 24 88
  Herbaspirillum seropedicae SmR1 HSERO_RS09625 RNA polymerase sigma factor RpoE no data 24 92
  Pectobacterium carotovorum WPP14 HER17_RS21290 sigma-70 family RNA polymerase sigma factor insig. 27 56
  Rhizobium sp. OAE497 ABIE40_RS20320 sigma-70 family RNA polymerase sigma factor insig. 28 79
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS06665 RNA polymerase sigma factor insig. 27 96
  Ralstonia solanacearum UW163 UW163_RS06960 RNA polymerase sigma factor insig. 27 96
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_563 RNA polymerase sigma-70 factor insig. 23 78
  Bacteroides thetaiotaomicron VPI-5482 BT3190 putative RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 30 57
  Variovorax sp. SCN45 GFF4261 RNA polymerase ECF-type sigma factor insig. 29 79
  Pseudomonas stutzeri RCH2 Psest_4339 DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog strong 27 74
  Variovorax sp. SCN45 GFF1632 RNA polymerase ECF-type sigma factor insig. 30 63
  Mucilaginibacter yixingensis YX-36 DSM 26809 ABZR88_RS01700 RNA polymerase sigma factor insig. 26 80
  Pseudomonas fluorescens GW456-L13 PfGW456L13_2394 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis @ FIG006045: Sigma factor, ECF subfamily insig. 25 74
  Acidovorax sp. GW101-3H11 Ac3H11_1381 RNA polymerase sigma factor for flagellar operon sig. 30 59
  Pseudomonas stutzeri RCH2 Psest_3100 RNA polymerase sigma factor RpoE strong 28 95
  Castellaniella sp019104865 MT123 ABCV34_RS08355 RNA polymerase sigma factor RpoE cofit 28 44
  Pontibacter actiniarum KMM 6156, DSM 19842 CA264_11965 RNA polymerase subunit sigma insig. 27 66
  Variovorax sp. OAS795 ABID97_RS08330 RNA polymerase sigma factor RpoE strong 25 84
  Pseudomonas putida KT2440 PP_1427 RNA polymerase sigma E factor sig. 24 95
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2751 RNA polymerase sigma-70 factor, Bacteroides expansion family 1 insig. 24 85
  Sinorhizobium meliloti 1021 SM_b20592 RNA polymerase sigma factor insig. 23 95
  Pseudomonas fluorescens SBW25 PFLU_RS26350 RNA polymerase sigma factor insig. 27 83
  Pseudomonas fluorescens SBW25-INTG PFLU_RS26350 RNA polymerase sigma factor sig. 27 83
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_133 Sigma-70 factor FpvI (ECF subfamily), controling pyoverdin biosynthesis insig. 27 74