| Orth | Species | Gene | Name | Description | Fitness | %Id | Cov |
| | Xanthobacter sp. DMC5 | GFF4526 | | Sporulation initiation phosphotransferase F | insig. | 100 | 100 |
| o | Burkholderia phytofirmans PsJN | BPHYT_RS34550 | | histidine kinase | no data | 31 | 94 |
| o | Ralstonia sp. UNC404CL21Col | ABZR87_RS22575 | | response regulator | no data | 30 | 94 |
| | Pseudomonas simiae WCS417 | PS417_03070 | | LuxR family transcriptional regulator | sig. | 36 | 89 |
| o | Paraburkholderia bryophila 376MFSha3.1 | H281DRAFT_03576 | | two-component system, chemotaxis family, response regulator CheY | insig. | 31 | 94 |
| o | Paraburkholderia sabiae LMG 24235 | QEN71_RS13065 | | response regulator | no data | 32 | 94 |
| | Pseudomonas sp. DMC3 | GFF3335 | | Response regulator protein TmoT | cofit | 35 | 82 |
| | Pseudomonas segetis P6 | MPMX49_04034 | | Transcriptional regulatory protein FixJ | insig. | 31 | 84 |
| | Pseudomonas fluorescens FW300-N1B4 | Pf1N1B4_1282 | | DNA-binding response regulator, LuxR family | insig. | 35 | 89 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2963 | | response regulator (TIGR) | strong | 34 | 94 |
| | Magnetospirillum magneticum AMB-1 | AMB_RS13325 | | response regulator | cofit | 39 | 81 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS03200 | | response regulator | insig. | 34 | 93 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS03200 | | response regulator | insig. | 34 | 93 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS03150 | | response regulator transcription factor | insig. | 33 | 89 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS03150 | | response regulator transcription factor | sig. | 33 | 89 |
| | Pseudomonas simiae WCS417 | PS417_03120 | | histidine kinase | insig. | 34 | 93 |
| | Pseudomonas lactucae CFBP13502 | GEMAOFIL_01292 | | Regulatory protein AtoC | cofit | 34 | 87 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1769 | | response regulator receiver protein (RefSeq) | sig. | 32 | 98 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_13785 | | LuxR family transcriptional regulator | insig. | 34 | 89 |
| | Pseudomonas syringae pv. syringae B728a | Psyr_4376 | | regulatory protein, LuxR:Response regulator receiver | insig. | 30 | 91 |
| | Pseudomonas syringae pv. syringae B728a ΔmexB | Psyr_4376 | | regulatory protein, LuxR:Response regulator receiver | insig. | 30 | 91 |
| | Xanthobacter sp. DMC5 | GFF4524 | | Regulator of RpoS | insig. | 31 | 90 |
| | Dickeya dianthicola 67-19 | HGI48_RS05935 | | two-component system sensor histidine kinase RcsC | insig. | 34 | 89 |
| | Dickeya dianthicola ME23 | DZA65_RS06270 | | two-component system sensor histidine kinase RcsC | cofit | 34 | 89 |
| | Bosea sp. OAE506 | ABIE41_RS05580 | | response regulator | no data | 37 | 88 |
| | Serratia liquefaciens MT49 | IAI46_04750 | | response regulator transcription factor | insig. | 35 | 82 |
| | Dickeya dadantii 3937 | DDA3937_RS05890 | | two-component system sensor histidine kinase RcsC | cofit | 33 | 89 |
| | Serratia liquefaciens MT49 | IAI46_17455 | | two-component system sensor histidine kinase RcsC | cofit | 32 | 87 |
| | Pantoea sp. MT58 | IAI47_06470 | | two-component system sensor histidine kinase RcsC | sig. | 37 | 86 |
| | Pantoea agglomerans CFBP13505 P0401 | PagCFBP13505_RS00455 | | two-component system sensor histidine kinase RcsC | cofit | 37 | 86 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | strong | 33 | 87 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS05610 | | sigma-54-dependent Fis family transcriptional regulator | strong | 33 | 87 |
| | Pseudomonas fluorescens FW300-N2E3 | AO353_16225 | | Fis family transcriptional regulator | insig. | 32 | 87 |
| | Alteromonas macleodii MIT1002 | MIT1002_01326 | | Quorum-sensing regulator protein F | insig. | 35 | 87 |
| | Pseudomonas simiae WCS417 | PS417_05525 | | Fis family transcriptional regulator | strong | 33 | 87 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_18235 | | two-component system sensor histidine kinase/response regulator | strong | 36 | 90 |
| | Erwinia tracheiphila SCR3 | LU632_RS08170 | rcsC | two-component system sensor histidine kinase RcsC | strong | 36 | 90 |
| | Pseudomonas putida KT2440 | PP_0574 | | DNA-binding response regulator, LuxR family | strong | 32 | 86 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU2966 | | response regulator (TIGR) | strong | 30 | 87 |
| | Pantoea sp. MT58 | IAI47_07855 | | response regulator transcription factor | insig. | 34 | 82 |
| | Escherichia coli BL21 | ECD_03753 | | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein | insig. | 38 | 91 |
| | Escherichia fergusonii Becca | EFB2_04748 | | DNA-binding transcriptional regulator NtrC | strong | 38 | 91 |
| | Escherichia coli ECOR27 | NOLOHH_06240 | glnG | nitrogen regulation protein NR(I) | insig. | 38 | 91 |
| | Escherichia coli ECOR38 | HEPCGN_12740 | glnG | nitrogen regulation protein NR(I) | insig. | 38 | 91 |
| | Escherichia coli ECRC100 | OKFHMN_14110 | glnG | nitrogen regulation protein NR(I) | insig. | 38 | 91 |
| | Escherichia coli ECRC101 | MCAODC_04610 | glnG | nitrogen regulation protein NR(I) | strong | 38 | 91 |
| | Escherichia coli ECRC102 | NIAGMN_11865 | glnG | nitrogen regulation protein NR(I) | insig. | 38 | 91 |
| | Escherichia coli ECRC62 | BNILDI_05290 | glnG | nitrogen regulation protein NR(I) | cofit | 38 | 91 |
| | Escherichia coli ECRC98 | JDDGAC_17735 | glnG | nitrogen regulation protein NR(I) | insig. | 38 | 91 |
| | Escherichia coli ECRC99 | KEDOAH_14040 | glnG | nitrogen regulation protein NR(I) | no data | 38 | 91 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_04184 | | DNA-binding transcriptional regulator NtrC | insig. | 38 | 91 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS22295 | | nitrogen regulation protein NR(I) | strong | 38 | 91 |
| | Escherichia coli BW25113 | b3868 | glnG | fused DNA-binding response regulator in two-component regulatory system with GlnL: response regulator/sigma54 interaction protein (NCBI) | strong | 38 | 91 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU3215 | drrA | response regulator (TIGR) | insig. | 34 | 94 |
| | Erwinia amylovora T8 | OLJFJH_11555 | | two-component system sensor histidine kinase/response regulator | strong | 34 | 89 |
| | Burkholderia phytofirmans PsJN | BPHYT_RS32660 | | chemotaxis protein CheY | no data | 35 | 93 |
| | Pantoea sp. MT58 | IAI47_04945 | | two-component system response regulator GlrR | insig. | 34 | 91 |
| | Desulfovibrio vulgaris Miyazaki F | DvMF_1772 | | response regulator receiver protein (RefSeq) | sig. | 30 | 87 |
| | Herbaspirillum seropedicae SmR1 | HSERO_RS12350 | | histidine kinase | insig. | 27 | 95 |
| | Erwinia tracheiphila HP pepo 2.2 | IJEDHG_04270 | | histidine kinase | cofit | 36 | 93 |
| | Erwinia tracheiphila SCR3 | LU632_RS04725 | | transporter substrate-binding domain-containing protein | insig. | 36 | 93 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0357 | | Signal transduction histidine kinase | insig. | 33 | 89 |
| | Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | GFF1832 | | Two-component sensor protein RcsC (EC 2.7.3.-) | strong | 33 | 89 |
| | Enterobacter sp. TBS_079 | MPMX20_03178 | | Sensor histidine kinase RcsC | sig. | 33 | 86 |
| | Escherichia coli BL21 | ECD_02145 | | hybrid sensory kinase in two-component regulatory system with RcsB and YojN | insig. | 32 | 89 |
| | Escherichia coli ECOR27 | NOLOHH_14745 | rcsC | two-component system sensor histidine kinase RcsC | cofit | 32 | 89 |
| | Escherichia coli ECOR38 | HEPCGN_22440 | rcsC | two-component system sensor histidine kinase RcsC | insig. | 32 | 89 |
| | Escherichia coli ECRC101 | MCAODC_14220 | rcsC | two-component system sensor histidine kinase RcsC | insig. | 32 | 89 |
| | Escherichia coli ECRC62 | BNILDI_13665 | rcsC | two-component system sensor histidine kinase RcsC | cofit | 32 | 89 |
| | Escherichia coli HS(pFamp)R (ATCC 700891) | OHPLBJKB_01492 | | Sensor histidine kinase RcsC | insig. | 32 | 89 |
| | Escherichia coli BW25113 | b2218 | rcsC | hybrid sensory kinase in two-component regulatory system with RcsB and YojN (RefSeq) | strong | 32 | 89 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_4350 | | nitrogen regulation protein NR(I) | insig. | 37 | 91 |
| | Escherichia coli ECRC100 | OKFHMN_23170 | rcsC | two-component system sensor histidine kinase RcsC | insig. | 32 | 89 |
| | Escherichia coli ECRC102 | NIAGMN_20935 | rcsC | two-component system sensor histidine kinase RcsC | cofit | 32 | 89 |
| | Escherichia coli ECRC98 | JDDGAC_27130 | rcsC | two-component system sensor histidine kinase RcsC | sig. | 32 | 89 |
| | Escherichia coli ECRC99 | KEDOAH_05015 | rcsC | two-component system sensor histidine kinase RcsC | no data | 32 | 89 |
| | Azospirillum sp. SherDot2 | MPMX19_04271 | | Response regulator rcp1 | sig. | 29 | 95 |
| | Dickeya dianthicola 67-19 | HGI48_RS21235 | | nitrogen regulation protein NR(I) | strong | 37 | 91 |
| | Dickeya dianthicola ME23 | DZA65_RS22210 | | nitrogen regulation protein NR(I) | strong | 37 | 91 |
| | Enterobacter sp. TBS_079 | MPMX20_04597 | | DNA-binding transcriptional regulator NtrC | strong | 37 | 91 |
| | Acidovorax sp. GW101-3H11 | Ac3H11_3168 | | Response regulator | insig. | 36 | 86 |
| | Pseudomonas putida KT2440 | PP_3484 | | Response regulator receiver protein | strong | 33 | 96 |
| | Pectobacterium carotovorum WPP14 | HER17_RS15580 | | two-component system sensor histidine kinase RcsC | cofit | 32 | 94 |
| | Pectobacterium carotovorum WPP14 | HER17_RS21440 | | nitrogen regulation protein NR(I) | cofit | 38 | 91 |
| | Dickeya dadantii 3937 | DDA3937_RS00125 | | nitrogen regulation protein NR(I) | cofit | 37 | 91 |
| | Rahnella sp. WP5 | EX31_RS15880 | | nitrogen regulation protein NR(I) | strong | 37 | 91 |
| | Caulobacter crescentus NA1000 | CCNA_00441 | | chemotaxis receiver domain protein cheYI | strong | 37 | 89 |
| | Caulobacter crescentus NA1000 Δfur | CCNA_00441 | | chemotaxis receiver domain protein cheYI | cofit | 37 | 89 |
| | Pseudomonas sp. SVBP6 | COO64_RS18480 | | response regulator transcription factor | insig. | 31 | 89 |
| | Desulfovibrio vulgaris Hildenborough JW710 | DVU0271 | | response regulator (TIGR) | insig. | 38 | 89 |
| | Azospirillum brasilense Sp245 | AZOBR_RS31795 | | putative response regulator receiver (CheY-like protein) | no data | 33 | 95 |
| | Enterobacter sp. TBS_079 | MPMX20_03423 | | Transcriptional regulatory protein QseF | sig. | 32 | 90 |
| | Pseudomonas sp. S08-1 | OH686_08925 | | Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB | cofit | 36 | 87 |
| | Pseudomonas sp. SVBP6 | COO64_RS09860 | | ATP-binding protein | insig. | 35 | 94 |
| | Pseudomonas fluorescens SBW25 | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | strong | 34 | 90 |
| | Pseudomonas fluorescens SBW25-INTG | PFLU_RS01400 | | sigma-54-dependent Fis family transcriptional regulator | strong | 34 | 90 |
| | Mucilaginibacter yixingensis YX-36 DSM 26809 | ABZR88_RS21760 | | response regulator transcription factor | insig. | 32 | 83 |
| | Escherichia fergusonii Becca | EFB2_01637 | | Sensor histidine kinase RcsC | insig. | 32 | 89 |
| | Escherichia coli Nissle 1917 | ECOLIN_RS12955 | | two-component system sensor histidine kinase RcsC | insig. | 32 | 89 |
| | Enterobacter asburiae PDN3 | EX28DRAFT_0096 | | Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains | sig. | 32 | 90 |