Homologs of CCNA_03711 from Caulobacter crescentus NA1000

ribosome-associated factor Y
SEED: Ribosomal subunit interface protein

71 hits from BLASTp (E < 0.01)

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Orth Species Gene Name Description Fitness %Id Cov
  Caulobacter crescentus NA1000 CCNA_03711 ribosome-associated factor Y strong 100 100
o Caulobacter crescentus NA1000 Δfur CCNA_03711 ribosome-associated factor Y cofit 100 100
o Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS16080 ribosome-associated translation inhibitor RaiA insig. 59 97
o Agrobacterium fabrum C58 Atu0331 sigma-54 modulation protein strong 42 96
o Rhodopseudomonas palustris CGA009 TX73_000265 ribosome-associated translation inhibitor RaiA cofit 41 94
o Rhizobium sp. OAE497 ABIE40_RS01865 ribosome-associated translation inhibitor RaiA sig. 41 96
o Sinorhizobium meliloti 1021 SMc01140 SIGMA54 modulation protein no data 39 96
o Dinoroseobacter shibae DFL-12 Dshi_3583 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) sig. 38 93
o Bosea sp. OAE506 ABIE41_RS00120 ribosome-associated translation inhibitor RaiA insig. 42 96
o Phaeobacter inhibens DSM 17395 PGA1_c35970 putative sigma(54) modulation protein sig. 35 94
o Azospirillum sp. SherDot2 MPMX19_02669 Ribosome hibernation promotion factor no data 42 94
o Azospirillum brasilense Sp245 AZOBR_RS18875 ribose ABC transporter permease strong 38 94
o Sphingomonas koreensis DSMZ 15582 Ga0059261_2191 ribosomal subunit interface protein strong 37 95
  Pseudomonas putida KT2440 PP_0951 Ribosome hibernation promoting factor strong 28 50
o Synechococcus elongatus PCC 7942 Synpcc7942_2352 lrtA sigma 54 modulation protein / SSU ribosomal protein S30P insig. 26 94
  Dickeya dianthicola 67-19 HGI48_RS01440 ribosome hibernation promoting factor insig. 31 47
  Dickeya dianthicola ME23 DZA65_RS01505 ribosome hibernation promoting factor insig. 31 47
  Alteromonas macleodii MIT1002 MIT1002_00826 Ribosome hibernation promoting factor strong 27 47
  Variovorax sp. SCN45 GFF7293 Ribosome hibernation promoting factor Hpf cofit 29 49
  Pseudomonas fluorescens GW456-L13 PfGW456L13_5015 Ribosome hibernation protein YhbH insig. 24 50
  Dickeya dadantii 3937 DDA3937_RS01525 ribosome hibernation promoting factor sig. 30 47
  Escherichia coli BL21 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers sig. 30 47
  Escherichia fergusonii Becca EFB2_00620 Ribosome hibernation promoting factor insig. 30 47
  Escherichia coli ECOR27 NOLOHH_09735 Ribosome hibernation promoting factor insig. 30 47
  Escherichia coli ECOR38 HEPCGN_16810 Ribosome hibernation promoting factor cofit 30 47
  Escherichia coli ECRC100 OKFHMN_17935 Ribosome hibernation promoting factor cofit 30 47
  Escherichia coli ECRC101 MCAODC_08455 Ribosome hibernation promoting factor cofit 30 47
  Escherichia coli ECRC102 NIAGMN_15695 Ribosome hibernation promoting factor insig. 30 47
  Escherichia coli ECRC62 BNILDI_01800 Ribosome hibernation promoting factor strong 30 47
  Escherichia coli ECRC98 JDDGAC_21560 Ribosome hibernation promoting factor cofit 30 47
  Escherichia coli ECRC99 KEDOAH_10215 Ribosome hibernation promoting factor no data 30 47
  Escherichia coli HS(pFamp)R (ATCC 700891) OHPLBJKB_00497 Ribosome hibernation promoting factor sig. 30 47
  Escherichia coli Nissle 1917 ECOLIN_RS18430 ribosome hibernation promoting factor insig. 30 47
  Escherichia coli BW25113 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) sig. 30 47
  Shewanella loihica PV-4 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) strong 24 47
  Variovorax sp. OAS795 ABID97_RS04490 ribosome-associated translation inhibitor RaiA insig. 29 49
  Desulfovibrio vulgaris Hildenborough JW710 DVU1629 yfiA ribosomal subunit interface protein (TIGR) strong 26 94
  Pseudomonas fluorescens FW300-N2E3 AO353_05185 hypothetical protein sig. 24 50
  Shewanella sp. ANA-3 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) strong 26 47
  Shewanella oneidensis MR-1 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) sig. 26 47
  Acidovorax sp. GW101-3H11 Ac3H11_681 Ribosome hibernation protein YhbH sig. 28 51
  Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 GFF2947 Ribosome hibernation protein YhbH cofit 30 47
  Pectobacterium carotovorum WPP14 HER17_RS20065 ribosome hibernation promoting factor cofit 29 47
  Enterobacter asburiae PDN3 EX28DRAFT_3257 ribosomal subunit interface protein cofit 29 47
  Serratia liquefaciens MT49 IAI46_22475 ribosome hibernation promoting factor insig. 29 47
  Enterobacter sp. TBS_079 MPMX20_04109 Ribosome hibernation promoting factor sig. 30 47
  Pseudomonas sp. S08-1 OH686_08550 Ribosome hibernation promoting factor Hpf cofit 26 50
  Paraburkholderia sabiae LMG 24235 QEN71_RS01750 ribosome-associated translation inhibitor RaiA insig. 29 50
  Desulfovibrio vulgaris Miyazaki F DvMF_0426 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) insig. 28 60
  Pseudomonas stutzeri RCH2 Psest_3314 ribosomal subunit interface protein sig. 25 50
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_1081 Ribosome hibernation protein YhbH sig. 23 50
  Pseudomonas fluorescens FW300-N2C3 AO356_07040 hypothetical protein insig. 23 50
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_3268 Ribosome hibernation protein YhbH sig. 23 50
  Rahnella sp. WP5 EX31_RS12395 ribosome hibernation promoting factor cofit 27 47
  Burkholderia phytofirmans PsJN BPHYT_RS02900 ribosome hibernation promoting factor sig. 28 50
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P insig. 28 50
  Paraburkholderia graminis OAS925 ABIE53_000717 putative sigma-54 modulation protein strong 28 50
  Pseudomonas sp. RS175 PFR28_00172 Ribosome hibernation promoting factor sig. 24 50
  Kangiella aquimarina DSM 16071 B158DRAFT_2079 ribosomal subunit interface protein insig. 24 47
  Pseudomonas simiae WCS417 PS417_04340 ribosome hibernation promoting factor HPF strong 24 45
  Castellaniella sp019104865 MT123 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA cofit 24 50
  Dechlorosoma suillum PS Dsui_0703 ribosomal subunit interface protein strong 22 51
  Cupriavidus basilensis FW507-4G11 RR42_RS02080 ribosome hibernation promoting factor sig. 27 53
  Shewanella amazonensis SB2B Sama_3089 ribosomal subunit interface protein (RefSeq) strong 23 47
  Fusobacterium nucleatum SB010 HUW76_07850 ribosome-associated translation inhibitor RaiA strong 21 93
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF2612 Ribosome hibernation protein YhbH strong 26 47
  Shewanella loihica PV-4 Shew_1241 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) no data 26 46
  Pantoea sp. MT58 IAI47_17190 ribosome hibernation promoting factor insig. 26 47
  Klebsiella michiganensis M5al BWI76_RS21460 translation inhibitor protein RaiA insig. 21 50
  Marinobacter adhaerens HP15 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA cofit 26 45
  Ralstonia solanacearum GMI1000 RS_RS02015 ribosomal subunit interface protein strong 26 53