Homologs of AMB_RS17600 from Magnetospirillum magneticum AMB-1

DNA-directed RNA polymerase specialized sigma subunit
SEED: RNA polymerase sigma-70 factor, ECF subfamily
KEGG: RNA polymerase sigma-70 factor, ECF subfamily

Top 100 hits from BLASTp (E < 0.01)

Or try PaperBLAST, fast.genomics, the ENIGMA genome browser, or the comparative fitness browser

Orth Species Gene Name Description Fitness %Id Cov
  Magnetospirillum magneticum AMB-1 AMB_RS17600 DNA-directed RNA polymerase specialized sigma subunit cofit 100 100
o Azospirillum sp. SherDot2 MPMX19_00243 ECF RNA polymerase sigma factor SigJ insig. 51 94
o Ralstonia solanacearum PSI07 RPSI07_RS23355 RNA polymerase sigma-70 factor insig. 44 93
o Acidovorax sp. GW101-3H11 Ac3H11_4965 RNA polymerase ECF-type sigma factor insig. 41 93
o Paraburkholderia sabiae LMG 24235 QEN71_RS31540 RNA polymerase sigma-70 factor insig. 39 93
o Ralstonia sp. UNC404CL21Col ABZR87_RS05500 RNA polymerase sigma-70 factor strong 41 93
o Caulobacter crescentus NA1000 CCNA_03375 RNA polymerase sigma-J factor strong 43 93
o Caulobacter crescentus NA1000 Δfur CCNA_03375 RNA polymerase sigma-J factor cofit 43 93
o Burkholderia phytofirmans PsJN BPHYT_RS11635 RNA polymerase subunit sigma-24 insig. 38 93
o Variovorax sp. SCN45 GFF5440 RNA polymerase ECF-type sigma factor insig. 38 97
o Herbaspirillum seropedicae SmR1 HSERO_RS00750 RNA polymerase subunit sigma-24 insig. 38 94
o Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01268 RNA polymerase sigma-70 factor, ECF subfamily insig. 39 93
o Rhodopseudomonas palustris CGA009 TX73_005735 sigma-70 family RNA polymerase sigma factor insig. 38 98
o Variovorax sp. OAS795 ABID97_RS02030 RNA polymerase sigma-70 factor insig. 40 94
o Lysobacter sp. OAE881 ABIE51_RS08425 RNA polymerase sigma-70 factor insig. 39 93
o Paraburkholderia graminis OAS925 ABIE53_004797 RNA polymerase sigma-70 factor (ECF subfamily) insig. 38 91
o Hydrogenophaga sp. GW460-11-11-14-LB1 GFF235 Putative RNA polymerase sigma factor insig. 38 91
o Dyella japonica UNC79MFTsu3.2 ABZR86_RS01610 RNA polymerase sigma-70 factor insig. 38 93
  Dyella japonica UNC79MFTsu3.2 ABZR86_RS00750 RNA polymerase sigma factor SigJ insig. 39 96
o Rhodanobacter sp. FW510-T8 OKGIIK_03820 RNA polymerase sigma-70 factor, ECF subfamily insig. 37 98
o Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_4523 RNA polymerase sigma-70 factor, ECF subfamily insig. 36 97
  Paraburkholderia graminis OAS925 ABIE53_003338 RNA polymerase sigma factor (sigma-70 family) strong 42 74
o Phaeobacter inhibens DSM 17395 PGA1_c28920 'RNA polymerase sigma factor (sigma-70 family; ECF41 subgroup)' insig. 38 92
  Lysobacter sp. OAE881 ABIE51_RS11095 RNA polymerase sigma-70 factor insig. 37 91
o Rhodanobacter denitrificans FW104-10B01 LRK54_RS15060 RNA polymerase sigma factor SigJ insig. 36 98
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_04104 RNA polymerase sigma-70 factor, ECF subfamily insig. 43 69
o Rhodanobacter denitrificans MT42 LRK55_RS14775 RNA polymerase sigma factor SigJ insig. 36 98
o Mycobacterium tuberculosis H37Rv Rv3328c Probable alternative RNA polymerase sigma factor (fragment) SigJ insig. 35 93
  Paraburkholderia sabiae LMG 24235 QEN71_RS02865 sigma-70 family RNA polymerase sigma factor insig. 47 67
o Pseudomonas fluorescens GW456-L13 PfGW456L13_3501 RNA polymerase sigma-70 factor, ECF subfamily insig. 33 93
o Sinorhizobium meliloti 1021 SM_b20030 RNA polymerase sigma factor SigJ insig. 35 91
  Burkholderia phytofirmans PsJN BPHYT_RS15835 RNA polymerase subunit sigma24 insig. 43 60
o Sphingomonas koreensis DSMZ 15582 Ga0059261_3435 RNA polymerase sigma factor, sigma-70 family insig. 35 91
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_2880 RNA polymerase sigma factor, sigma-70 family insig. 30 91
  Mycobacterium tuberculosis H37Rv Rv1189 Possible alternative RNA polymerase sigma factor SigI no data 30 92
  Variovorax sp. SCN45 GFF6705 hypothetical protein insig. 36 63
  Parabacteroides merdae CL09T00C40 HMPREF1078_RS06415 RNA polymerase sigma factor insig. 34 50
  Pseudomonas fluorescens FW300-N2E3 AO353_04915 RNA polymerase subunit sigma-24 insig. 34 51
  Azospirillum sp. SherDot2 MPMX19_05214 ECF RNA polymerase sigma factor SigE insig. 34 51
  Pseudomonas simiae WCS417 PS417_05120 RNA polymerase subunit sigma-24 insig. 31 55
  Pseudomonas fluorescens SBW25 PFLU_RS05190 RNA polymerase sigma factor insig. 31 55
  Pseudomonas fluorescens SBW25-INTG PFLU_RS05190 RNA polymerase sigma factor insig. 31 55
  Rhodospirillum rubrum S1H Rru_A0883 Sigma-24 (FecI) (NCBI) insig. 33 54
  Paraburkholderia graminis OAS925 ABIE53_002674 RNA polymerase sigma factor (sigma-70 family) insig. 34 51
  Phocaeicola dorei CL03T12C01 ABI39_RS03560 RNA polymerase sigma factor insig. 28 51
  Sinorhizobium meliloti 1021 SM_b20592 RNA polymerase sigma factor insig. 35 50
  Azospirillum brasilense Sp245 AZOBR_RS26615 RNA polymerase insig. 33 56
  Phocaeicola vulgatus CL09T03C04 HMPREF1058_RS09175 RNA polymerase sigma factor sig. 29 51
  Bacteroides stercoris CC31F HMPREF1181_RS04900 RNA polymerase sigma-70 factor insig. 28 54
  Paraburkholderia graminis OAS925 ABIE53_003919 RNA polymerase sigma-70 factor (ECF subfamily) insig. 28 49
  Variovorax sp. SCN45 GFF791 RNA polymerase sigma factor RpoE insig. 35 52
  Kangiella aquimarina DSM 16071 B158DRAFT_2027 RNA polymerase sigma factor, sigma-70 family insig. 27 48
  Pseudomonas stutzeri RCH2 Psest_3456 RNA polymerase sigma factor, sigma-70 family insig. 34 49
  Brevundimonas sp. GW460-12-10-14-LB2 A4249_RS02400 RNA polymerase sigma factor cofit 30 50
  Azospirillum sp. SherDot2 MPMX19_03088 putative RNA polymerase sigma factor FecI insig. 33 41
  Mycobacterium tuberculosis H37Rv Rv0182c Probable alternative RNA polymerase sigma factor SigG (RNA polymerase ECF type sigma factor) insig. 26 64
  Phaeobacter inhibens DSM 17395 PGA1_c08510 RNA polymerase sigma factor (ECF01 subgroup, ECF20 subgroup) insig. 32 48
  Pseudomonas fluorescens FW300-N2E3 AO353_03435 RNA polymerase subunit sigma-24 insig. 28 46
  Sphingomonas koreensis DSMZ 15582 Ga0059261_3853 RNA polymerase sigma factor, sigma-70 family insig. 32 48
  Pedobacter sp. GW460-11-11-14-LB5 CA265_RS11095 hypothetical protein insig. 29 51
  Azospirillum brasilense Sp245 AZOBR_RS27315 RNA polymerase sigma 70 insig. 34 45
  Pseudomonas fluorescens GW456-L13 PfGW456L13_4951 FIG006045: Sigma factor, ECF subfamily insig. 30 51
  Rhodopseudomonas palustris CGA009 TX73_003315 RNA polymerase sigma factor insig. 29 47
  Pseudomonas fluorescens FW300-N2C3 AO356_05230 RNA polymerase subunit sigma-24 insig. 31 46
  Pseudomonas putida KT2440 PP_1008 RNA polymerase subunit sigma-24 strong 28 46
  Azospirillum brasilense Sp245 AZOBR_RS28490 hypothetical protein sig. 33 51
  Herbaspirillum seropedicae SmR1 HSERO_RS11705 extracytoplasmic-function sigma-70 factor insig. 40 21
  Rhizobium sp. OAE497 ABIE40_RS22730 RNA polymerase sigma factor insig. 28 51
  Ralstonia solanacearum IBSBF1503 RALBFv3_RS04270 DNA-directed RNA polymerase sigma-70 factor insig. 34 46
  Ralstonia solanacearum UW163 UW163_RS09400 DNA-directed RNA polymerase sigma-70 factor insig. 34 46
  Pseudomonas syringae pv. syringae B728a Psyr_1107 Sigma-70 region 2 insig. 32 46
  Pseudomonas syringae pv. syringae B728a ΔmexB Psyr_1107 Sigma-70 region 2 insig. 32 46
  Variovorax sp. SCN45 GFF4544 RNA polymerase sigma factor RpoE insig. 30 49
  Bacteroides ovatus ATCC 8483 BACOVA_01251 RNA polymerase sigma-70 factor sig. 29 47
  Marinobacter adhaerens HP15 HP15_342 RNA polymerase sigma factor SigE insig. 28 47
  Pseudomonas putida KT2440 PP_4608 RNA polymerase sigma-70 factor, ECF subfamily insig. 27 50
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF4350 RNA polymerase sigma-54 factor RpoN insig. 32 50
  Rhizobium sp. OAE497 ABIE40_RS14450 RNA polymerase sigma factor insig. 29 60
  Azospirillum brasilense Sp245 AZOBR_RS23325 RNA polymerase sigma70 insig. 29 51
  Pseudomonas fluorescens FW300-N1B4 Pf1N1B4_604 FIG006045: Sigma factor, ECF subfamily insig. 26 46
  Echinicola vietnamensis KMM 6221, DSM 17526 Echvi_0726 RNA polymerase sigma factor, sigma-70 family insig. 29 49
  Paraburkholderia bryophila 376MFSha3.1 H281DRAFT_01538 RNA polymerase sigma-70 factor, ECF subfamily insig. 31 61
  Ralstonia sp. UNC404CL21Col ABZR87_RS16160 sigma-70 family RNA polymerase sigma factor insig. 32 46
  Pseudomonas sp. S08-1 OH686_05515 RNA polymerase sigma factor RpoE cofit 28 46
  Bacteroides thetaiotaomicron VPI-5482 BT0188 RNA polymerase ECF-type sigma factor (NCBI ptt file) sig. 28 47
  Variovorax sp. SCN45 GFF4182 Extracytoplasmic function (ECF) sigma factor VreI insig. 28 55
  Synechococcus elongatus PCC 7942 Synpcc7942_1923 sigG RNA polymerase sigma factor RpoE strong 30 47
  Kangiella aquimarina DSM 16071 B158DRAFT_0015 RNA polymerase sigma factor, sigma-70 family insig. 30 47
  Hydrogenophaga sp. GW460-11-11-14-LB1 GFF329 RNA polymerase sigma-54 factor RpoN insig. 32 50
  Paraburkholderia graminis OAS925 ABIE53_005146 RNA polymerase sigma factor (sigma-70 family) sig. 30 56
  Sinorhizobium meliloti 1021 SMc01506 RNA polymerase sigma factor strong 29 50
  Pseudomonas simiae WCS417 PS417_05100 RNA polymerase sigma factor sig. 32 43
  Rhodopseudomonas palustris CGA009 TX73_021900 sigma-70 family RNA polymerase sigma factor strong 29 50
  Pseudomonas fluorescens FW300-N2E2 Pf6N2E2_2900 FIG006045: Sigma factor, ECF subfamily insig. 30 46
  Agrobacterium fabrum C58 Atu3387 sigma factor insig. 29 51
  Variovorax sp. OAS795 ABID97_RS16445 sigma-70 family RNA polymerase sigma factor no data 34 49
  Xanthomonas campestris pv. campestris strain 8004 Xcc-8004.3837.1 RNA polymerase sigma-54 factor RpoN insig. 32 45
  Pseudomonas putida KT2440 PP_2088 RNA polymerase sigma factor SigX strong 29 45
  Azospirillum brasilense Sp245 AZOBR_RS29160 putative RNA polymerase sigma-70 factor ECF subfamily insig. 31 50
  Caulobacter crescentus NA1000 CCNA_02837 RNA polymerase ECF-type sigma factor insig. 29 51