| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Sinorhizobium meliloti 1021 | 1.0 | SMc00770 | | putrescine-binding periplasmic protein | 1.0 | SMc02766 | | tryptophan synthase subunit beta | 0.41 | 12 |
| Rhizobium sp. OAE497 | 0.77 | ABIE40_RS03265 | | polyamine ABC transporter substrate-binding protein | 0.95 | ABIE40_RS19335 | | tryptophan synthase subunit beta | — | — |
| Rhodopseudomonas palustris CGA009 | 0.61 | TX73_010380 | | polyamine ABC transporter substrate-binding protein | 0.72 | TX73_000360 | | tryptophan synthase subunit beta | — | — |
| Agrobacterium fabrum C58 | 0.61 | Atu0609 | | ABC transporter, substrate binding protein (putrescine) | 0.92 | Atu0018 | | tryptophan synthase beta subunit | — | — |
| Pseudomonas stutzeri RCH2 | 0.56 | Psest_4284 | | Spermidine/putrescine-binding periplasmic protein | 0.73 | Psest_0063 | | tryptophan synthase, beta subunit | low | > 67 |
| Phaeobacter inhibens DSM 17395 | 0.55 | PGA1_c34420 | | putrescine-binding periplasmic protein PotF | 0.75 | PGA1_c04870 | | tryptophan synthase beta chain | — | — |
| Shewanella amazonensis SB2B | 0.54 | Sama_2642 | | polyamine ABC transporter, periplasmic polyamine-binding protein (RefSeq) | 0.53 | Sama_2133 | | tryptophan synthase subunit beta (RefSeq) | low | > 62 |
| Pseudomonas fluorescens GW456-L13 | 0.54 | PfGW456L13_929 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.72 | PfGW456L13_566 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.54 | Pf6N2E2_4514 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.73 | Pf6N2E2_4048 | | Tryptophan synthase beta chain (EC 4.2.1.20) | 0.21 | 93 |
| Rahnella sp. WP5 | 0.54 | EX31_RS09630 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.54 | EX31_RS09975 | | tryptophan synthase subunit beta | low | > 89 |
| Pseudomonas fluorescens FW300-N1B4 | 0.53 | Pf1N1B4_2260 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.72 | Pf1N1B4_1831 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 87 |
| Pseudomonas sp. RS175 | 0.53 | PFR28_04294 | | Spermidine-binding periplasmic protein SpuE | 0.73 | PFR28_04715 | | Tryptophan synthase beta chain | — | — |
| Bosea sp. OAE506 | 0.53 | ABIE41_RS21650 | | polyamine ABC transporter substrate-binding protein | 0.74 | ABIE41_RS04270 | | tryptophan synthase subunit beta | — | — |
| Pseudomonas sp. S08-1 | 0.53 | OH686_11465 | | Putrescine ABC transporter putrescine-binding protein PotF | 0.72 | OH686_12425 | | tryptophan synthase, beta subunit | low | > 80 |
| Pseudomonas fluorescens FW300-N2C3 | 0.53 | AO356_13160 | | putrescine ABC transporter, substrate-binding component (from data) | 0.73 | AO356_10915 | | tryptophan synthase subunit beta | low | > 104 |
| Dickeya dadantii 3937 | 0.53 | DDA3937_RS09460 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.54 | DDA3937_RS10465 | | tryptophan synthase subunit beta | low | > 74 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.53 | Psyr_4864 | | extracellular solute-binding protein, family 1 | 0.72 | Psyr_0034 | | tryptophan synthase, beta chain | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.53 | Psyr_4864 | | extracellular solute-binding protein, family 1 | 0.72 | Psyr_0034 | | tryptophan synthase, beta chain | low | > 86 |
| Shewanella sp. ANA-3 | 0.53 | Shewana3_3097 | | extracellular solute-binding protein (RefSeq) | 0.53 | Shewana3_1516 | | tryptophan synthase subunit beta (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.53 | SO1270 | | polyamine ABC transporter, periplasmic polyamine-binding protein (NCBI ptt file) | 0.53 | SO3023 | trpB | tryptophan synthase, beta subunit (NCBI ptt file) | 0.48 | 69 |
| Pseudomonas putida KT2440 | 0.53 | PP_5180 | | spermidine/putrescine ABC transporter - periplasmic subunit | 0.72 | PP_0083 | | tryptophan synthase beta chain | low | > 96 |
| Pectobacterium carotovorum WPP14 | 0.52 | HER17_RS12500 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.55 | HER17_RS10935 | | tryptophan synthase subunit beta | low | > 75 |
| Dickeya dianthicola ME23 | 0.52 | DZA65_RS09790 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | DZA65_RS10945 | | tryptophan synthase subunit beta | low | > 75 |
| Enterobacter asburiae PDN3 | 0.52 | EX28DRAFT_2099 | | Spermidine/putrescine-binding periplasmic protein | 0.54 | EX28DRAFT_0933 | | tryptophan synthase, beta subunit | low | > 76 |
| Enterobacter sp. TBS_079 | 0.52 | MPMX20_01495 | | Putrescine-binding periplasmic protein | 0.54 | MPMX20_02513 | | Tryptophan synthase beta chain | low | > 85 |
| Pseudomonas simiae WCS417 | 0.52 | PS417_27120 | | ABC transporter substrate-binding protein | 0.72 | PS417_00185 | | tryptophan synthase subunit beta | low | > 88 |
| Klebsiella michiganensis M5al | 0.52 | BWI76_RS09460 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | BWI76_RS11845 | | tryptophan synthase subunit beta | low | > 92 |
| Pseudomonas fluorescens SBW25-INTG | 0.52 | PFLU_RS28770 | | polyamine ABC transporter substrate-binding protein | 0.72 | PFLU_RS00180 | | tryptophan synthase subunit beta | low | > 109 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.52 | Xcc-8004.2206.1 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.64 | Xcc-8004.1964.1 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 74 |
| Pseudomonas fluorescens SBW25 | 0.52 | PFLU_RS28770 | | polyamine ABC transporter substrate-binding protein | 0.72 | PFLU_RS00180 | | tryptophan synthase subunit beta | low | > 109 |
| Dickeya dianthicola 67-19 | 0.52 | HGI48_RS09480 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.54 | HGI48_RS10465 | | tryptophan synthase subunit beta | low | > 71 |
| Pseudomonas fluorescens FW300-N2E3 | 0.52 | AO353_08575 | | ABC transporter substrate-binding protein | 0.73 | AO353_10710 | | tryptophan synthase subunit beta | low | > 101 |
| Pantoea sp. MT58 | 0.51 | IAI47_13045 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | IAI47_09170 | | tryptophan synthase subunit beta | low | > 76 |
| Rhodospirillum rubrum S1H | 0.51 | Rru_A1018 | | extracellular solute-binding protein, family 1 (NCBI) | 0.74 | Rru_A3427 | | Tryptophan synthase, beta chain (NCBI) | low | > 58 |
| Escherichia coli BW25113 | 0.51 | b0854 | potF | putrescine transporter subunit: periplasmic-binding component of ABC superfamily (NCBI) | 0.53 | b1261 | trpB | tryptophan synthase subunit beta (NCBI) | low | > 76 |
| Escherichia coli BL21 | 0.50 | ECD_00859 | | putrescine ABC transporter periplasmic binding protein | 0.53 | ECD_01235 | | tryptophan synthase, beta subunit | low | > 60 |
| Escherichia fergusonii Becca | 0.50 | EFB2_03207 | | Putrescine-binding periplasmic protein | 0.53 | EFB2_02665 | | Tryptophan synthase beta chain | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.50 | OHPLBJKB_02814 | | Putrescine-binding periplasmic protein | 0.53 | OHPLBJKB_02422 | | Tryptophan synthase beta chain | low | > 73 |
| Escherichia coli ECRC62 | 0.50 | BNILDI_20585 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | BNILDI_18475 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECOR27 | 0.50 | NOLOHH_22330 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | NOLOHH_20330 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC98 | 0.50 | JDDGAC_09595 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | JDDGAC_05215 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli Nissle 1917 | 0.50 | ECOLIN_RS04550 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | ECOLIN_RS07600 | | tryptophan synthase subunit beta | low | > 52 |
| Escherichia coli ECRC101 | 0.50 | OKFHMN_05960 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | OKFHMN_02670 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC102 | 0.50 | NIAGMN_04005 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | NIAGMN_26840 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECRC101 | 0.50 | MCAODC_25175 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | MCAODC_15595 | trpB | tryptophan synthase subunit beta | — | — |
| Escherichia coli ECOR38 | 0.50 | HEPCGN_02070 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | HEPCGN_25520 | trpB | tryptophan synthase subunit beta | low | > 85 |
| Escherichia coli ECRC99 | 0.50 | KEDOAH_21950 | potF | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.53 | KEDOAH_26080 | trpB | tryptophan synthase subunit beta | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.50 | GFF758 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.54 | GFF2725 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 78 |
| Shewanella loihica PV-4 | 0.50 | Shew_0973 | | extracellular solute-binding protein (RefSeq) | 0.53 | Shew_2255 | | tryptophan synthase subunit beta (RefSeq) | low | > 60 |
| Serratia liquefaciens MT49 | 0.50 | IAI46_08370 | | spermidine/putrescine ABC transporter substrate-binding protein PotF | 0.54 | IAI46_14040 | | tryptophan synthase subunit beta | low | > 86 |
| Marinobacter adhaerens HP15 | 0.49 | HP15_940 | | putrescine ABC transporter, periplasmic putrescine-binding protein | 0.63 | HP15_1827 | | tryptophan synthase, beta subunit | — | — |
| Burkholderia phytofirmans PsJN | 0.47 | BPHYT_RS26645 | | ABC transporter substrate-binding protein | 0.63 | BPHYT_RS33875 | | tryptophan synthase subunit alpha | low | > 109 |
| Castellaniella sp019104865 MT123 | 0.46 | ABCV34_RS02360 | | polyamine ABC transporter substrate-binding protein | 0.64 | ABCV34_RS08435 | | tryptophan synthase subunit beta | — | — |
| Magnetospirillum magneticum AMB-1 | 0.46 | AMB_RS13210 | | polyamine ABC transporter substrate-binding protein | 0.71 | AMB_RS20295 | | tryptophan synthase subunit beta | — | — |
| Paraburkholderia sabiae LMG 24235 | 0.45 | QEN71_RS07120 | | polyamine ABC transporter substrate-binding protein | 0.64 | QEN71_RS17645 | | tryptophan synthase subunit beta | low | > 153 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.44 | H281DRAFT_05180 | | putrescine transport system substrate-binding protein | 0.63 | H281DRAFT_06067 | | tryptophan synthase, beta chain | low | > 103 |
| Azospirillum brasilense Sp245 | 0.39 | AZOBR_RS08845 | | ABC transporter substrate-binding protein | 0.73 | AZOBR_RS00525 | | tryptophan synthase subunit beta | low | > 97 |
| Azospirillum sp. SherDot2 | 0.37 | MPMX19_04883 | | Spermidine-binding periplasmic protein SpuE | 0.73 | MPMX19_02736 | | Tryptophan synthase beta chain | low | > 112 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.32 | GFF2035 | | Putrescine ABC transporter putrescine-binding protein PotF (TC 3.A.1.11.2) | 0.63 | GFF3355 | | Tryptophan synthase beta chain (EC 4.2.1.20) | low | > 90 |
| Desulfovibrio vulgaris Miyazaki F | 0.26 | DvMF_1957 | | extracellular solute-binding protein family 1 (RefSeq) | 0.57 | DvMF_2237 | | tryptophan synthase subunit beta (RefSeq) | low | > 51 |
| Vibrio cholerae E7946 ATCC 55056 | 0.26 | CSW01_07140 | | spermidine/putrescine ABC transporter substrate-binding protein | 0.53 | CSW01_05930 | | tryptophan synthase subunit beta | low | > 62 |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.25 | DVU0095 | potD-1 | polyamine ABC transporter, periplasmic polyamine-binding protein (TIGR) | 0.57 | DVU0085 | trpB-1 | tryptophan synthase, beta subunit (TIGR) | low | > 55 |
| Caulobacter crescentus NA1000 | 0.22 | CCNA_03239 | | spermidine/putrescine-binding protein | 0.74 | CCNA_03658 | | tryptophan synthase beta chain | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.22 | CCNA_03239 | | spermidine/putrescine-binding protein | 0.74 | CCNA_03658 | | tryptophan synthase beta chain | low | > 67 |
| Bacteroides thetaiotaomicron VPI-5482 | 0.18 | BT1288 | | spermidine/putrescine ABC transporter (NCBI ptt file) | 0.50 | BT0533 | | tryptophan synthase beta chain (NCBI ptt file) | low | > 81 |
| Bacteroides stercoris CC31F | 0.18 | HMPREF1181_RS12435 | | ABC transporter substrate-binding protein | 0.50 | HMPREF1181_RS15320 | | tryptophan synthase subunit beta | low | > 56 |
| Bacteroides ovatus ATCC 8483 | 0.17 | BACOVA_00085 | | ABC transporter, solute-binding protein | 0.49 | BACOVA_03779 | | tryptophan synthase, beta subunit | low | > 94 |
| Acidovorax sp. GW101-3H11 | 0.12 | Ac3H11_189 | | ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1) | 0.63 | Ac3H11_1534 | | Tryptophan synthase beta chain (EC 4.2.1.20) | — | — |
| Dinoroseobacter shibae DFL-12 | 0.08 | Dshi_2123 | | extracellular solute-binding protein family 1 (RefSeq) | 0.74 | Dshi_1031 | | tryptophan synthase, beta subunit (RefSeq) | — | — |
Not shown: 1 genomes with orthologs for SMc00770 only; 33 genomes with orthologs for SMc02766 only