Conservation of cofitness between SMc01012 and SMc01183 in Sinorhizobium meliloti 1021

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Sinorhizobium meliloti 1021 1.0 SMc01012 hypothetical protein 1.0 SMc01183 LexA repressor 0.31 12
Rhizobium sp. OAE497 0.79 ABIE40_RS09685 nitroreductase 0.86 ABIE40_RS08980 transcriptional repressor LexA low > 107
Agrobacterium fabrum C58 0.66 Atu1744 nitroreductase family protein 0.88 Atu1395 LexA repressor — —
Bosea sp. OAE506 0.48 ABIE41_RS14115 nitroreductase 0.71 ABIE41_RS17440 transcriptional repressor LexA — —
Rhodopseudomonas palustris CGA009 0.47 TX73_017620 nitroreductase 0.71 TX73_015045 transcriptional repressor LexA — —
Brevundimonas sp. GW460-12-10-14-LB2 0.42 A4249_RS08265 nitroreductase 0.63 A4249_RS06180 transcriptional repressor LexA low > 48
Caulobacter crescentus NA1000 0.40 CCNA_02736 nitroreductase family 0.63 CCNA_01979 LexA repressor low > 66
Caulobacter crescentus NA1000 Δfur 0.40 CCNA_02736 nitroreductase family 0.63 CCNA_01979 LexA repressor — —
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4214.1 Oxygen-insensitive NADPH nitroreductase (EC 1.-.-.-) 0.20 Xcc-8004.3898.1 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 74
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS03860 nitroreductase 0.17 LRK54_RS00250 transcriptional repressor LexA low > 59
Lysobacter sp. OAE881 0.37 ABIE51_RS05520 nitroreductase 0.21 ABIE51_RS11835 transcriptional repressor LexA low > 62
Rhodanobacter denitrificans MT42 0.37 LRK55_RS03610 nitroreductase 0.17 LRK55_RS18150 transcriptional repressor LexA 0.60 24
Sphingomonas koreensis DSMZ 15582 0.37 Ga0059261_1311 Nitroreductase 0.53 Ga0059261_0934 SOS regulatory protein LexA — —
Dinoroseobacter shibae DFL-12 0.33 Dshi_2627 nitroreductase (RefSeq) 0.58 Dshi_1803 transcriptional repressor, LexA family (RefSeq) — —
Burkholderia phytofirmans PsJN 0.32 BPHYT_RS35735 nitroreductase 0.19 BPHYT_RS08785 LexA repressor — —
Phaeobacter inhibens DSM 17395 0.31 PGA1_c24460 putative nitroreductase 0.56 PGA1_c16940 lexA repressor — —
Pseudomonas putida KT2440 0.29 PP_4506 Nitroreductase family protein 0.22 PP_3116 transcriptional repressor low > 96
Shewanella sp. ANA-3 0.28 Shewana3_2494 nitroreductase (RefSeq) 0.14 Shewana3_3989 LexA repressor (RefSeq) low > 73
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_2633 Nitroreductase family protein 0.24 Pf6N2E2_2088 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 103
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_03990 nitroreductase 0.25 AO356_21805 LexA family transcriptional regulator low > 104
Pseudomonas simiae WCS417 0.27 PS417_22730 nitroreductase 0.25 PS417_15595 LexA family transcriptional regulator — —
Shewanella oneidensis MR-1 0.27 SO2708 nitroreductase family protein (NCBI ptt file) 0.14 SO4603 lexA LexA repressor (NCBI ptt file) 0.40 42
Pseudomonas syringae pv. syringae B728a 0.27 Psyr_3592 Nitroreductase 0.23 Psyr_2520 SOS-response transcriptional repressor, LexA low > 86
Pseudomonas sp. S08-1 0.27 OH686_20760 Putative NAD(P)H nitroreductase YdjA 0.22 OH686_21960 repressor LexA low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.27 Psyr_3592 Nitroreductase 0.23 Psyr_2520 SOS-response transcriptional repressor, LexA low > 86
Enterobacter asburiae PDN3 0.27 EX28DRAFT_1766 Nitroreductase 0.15 EX28DRAFT_4269 SOS regulatory protein LexA low > 76
Pseudomonas sp. RS175 0.27 PFR28_00799 Putative NAD(P)H nitroreductase YdjA 0.23 PFR28_01352 LexA repressor low > 88
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.27 GFF3484 FIG002003: Protein YdjA 0.14 GFF1412 SOS-response repressor and protease LexA (EC 3.4.21.88) — —
Pseudomonas fluorescens SBW25-INTG 0.27 PFLU_RS24370 NAD(P)H nitroreductase 0.26 PFLU_RS17580 repressor LexA low > 109
Pseudomonas fluorescens SBW25 0.27 PFLU_RS24370 NAD(P)H nitroreductase 0.26 PFLU_RS17580 repressor LexA low > 109
Klebsiella michiganensis M5al 0.26 BWI76_RS11590 NAD(P)H nitroreductase 0.15 BWI76_RS01875 repressor LexA — —
Escherichia coli ECOR38 0.26 HEPCGN_05190 ydjA NAD(P)H nitroreductase 0.15 HEPCGN_11585 lexA transcriptional repressor LexA — —
Escherichia coli Nissle 1917 0.26 ECOLIN_RS09845 NAD(P)H nitroreductase 0.15 ECOLIN_RS23335 transcriptional repressor LexA — —
Escherichia coli ECRC102 0.26 NIAGMN_01245 ydjA NAD(P)H nitroreductase 0.15 NIAGMN_10815 lexA transcriptional repressor LexA — —
Escherichia coli ECRC99 0.26 KEDOAH_01290 ydjA NAD(P)H nitroreductase 0.15 KEDOAH_15095 lexA transcriptional repressor LexA — —
Escherichia coli ECOR27 0.26 NOLOHH_17330 ydjA NAD(P)H nitroreductase 0.15 NOLOHH_05220 lexA transcriptional repressor LexA — —
Escherichia coli BL21 0.26 ECD_01734 putative oxidoreductase 0.15 ECD_03915 transcriptional repressor of SOS regulon — —
Shewanella loihica PV-4 0.26 Shew_1740 nitroreductase (RefSeq) 0.17 Shew_0127 LexA repressor (RefSeq) — —
Escherichia coli ECRC98 0.26 JDDGAC_01395 ydjA NAD(P)H nitroreductase 0.15 JDDGAC_16690 lexA transcriptional repressor LexA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.26 OHPLBJKB_01967 Putative NAD(P)H nitroreductase YdjA 0.15 OHPLBJKB_04000 LexA repressor — —
Escherichia fergusonii Becca 0.26 EFB2_02229 Putative NAD(P)H nitroreductase YdjA 0.15 EFB2_04560 LexA repressor low > 86
Escherichia coli ECRC62 0.26 BNILDI_16115 ydjA NAD(P)H nitroreductase 0.15 BNILDI_06300 lexA transcriptional repressor LexA — —
Escherichia coli ECRC101 0.26 OKFHMN_26820 ydjA NAD(P)H nitroreductase 0.15 OKFHMN_13065 lexA transcriptional repressor LexA — —
Escherichia coli BW25113 0.26 b1765 ydjA predicted oxidoreductase (NCBI) 0.15 b4043 lexA LexA repressor (NCBI) — —
Escherichia coli ECRC101 0.26 MCAODC_18590 ydjA NAD(P)H nitroreductase 0.15 MCAODC_03565 lexA transcriptional repressor LexA — —
Enterobacter sp. TBS_079 0.26 MPMX20_01851 Putative NAD(P)H nitroreductase YdjA 0.15 MPMX20_00259 LexA repressor — —
Variovorax sp. SCN45 0.26 GFF205 Nitroreductase family protein 0.19 GFF357 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 127
Pantoea sp. MT58 0.25 IAI47_08975 NAD(P)H nitroreductase 0.15 IAI47_17890 repressor LexA — —
Vibrio cholerae E7946 ATCC 55056 0.25 CSW01_05335 NAD(P)H nitroreductase 0.17 CSW01_00490 repressor LexA — —
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_3544 Nitroreductase family protein 0.24 Pf1N1B4_5682 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 87
Pseudomonas stutzeri RCH2 0.25 Psest_1881 Nitroreductase 0.19 Psest_2646 SOS regulatory protein LexA low > 67
Azospirillum brasilense Sp245 0.25 AZOBR_RS29250 oxidoreductase 0.60 AZOBR_RS07430 LexA family transcriptional regulator — —
Pseudomonas fluorescens GW456-L13 0.24 PfGW456L13_4412 Nitroreductase family protein 0.24 PfGW456L13_2819 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 87
Castellaniella sp019104865 MT123 0.24 ABCV34_RS04210 nitroreductase 0.22 ABCV34_RS05120 transcriptional repressor LexA low > 48
Paraburkholderia bryophila 376MFSha3.1 0.24 H281DRAFT_04933 Nitroreductase 0.19 H281DRAFT_00777 SOS-response transcriptional repressor, LexA low > 103
Shewanella amazonensis SB2B 0.24 Sama_1457 nitroreductase family protein (RefSeq) 0.17 Sama_3481 LexA repressor (RefSeq) low > 62
Erwinia tracheiphila SCR3 0.24 LU632_RS12965 NAD(P)H nitroreductase 0.16 LU632_RS22315 lexA transcriptional repressor LexA — —
Dickeya dianthicola 67-19 0.23 HGI48_RS10305 NAD(P)H nitroreductase 0.15 HGI48_RS02735 repressor LexA — —
Serratia liquefaciens MT49 0.23 IAI46_14320 NAD(P)H nitroreductase 0.14 IAI46_23005 repressor LexA — —
Pseudomonas fluorescens FW300-N2E3 0.23 AO353_18485 nitroreductase 0.22 AO353_22700 LexA family transcriptional regulator low > 101
Dickeya dianthicola ME23 0.23 DZA65_RS10780 NAD(P)H nitroreductase 0.15 DZA65_RS02890 repressor LexA — —
Marinobacter adhaerens HP15 0.22 HP15_1466 nitroreductase family protein 0.17 HP15_2336 LexA repressor low > 73
Dickeya dadantii 3937 0.22 DDA3937_RS10295 NAD(P)H nitroreductase 0.15 DDA3937_RS02760 repressor LexA — —
Rahnella sp. WP5 0.22 EX31_RS06310 NAD(P)H nitroreductase 0.15 EX31_RS11845 repressor LexA low > 89
Hydrogenophaga sp. GW460-11-11-14-LB1 0.21 GFF5438 Nitroreductase family protein 0.19 GFF4501 SOS-response repressor and protease LexA (EC 3.4.21.88) low > 90
Alteromonas macleodii MIT1002 0.21 MIT1002_01842 Putative NAD(P)H nitroreductase YdjA 0.16 MIT1002_04036 LexA repressor low > 70
Acidovorax sp. GW101-3H11 0.21 Ac3H11_4500 nitroreductase 0.18 Ac3H11_2392 SOS-response repressor and protease LexA (EC 3.4.21.88) — —
Pectobacterium carotovorum WPP14 0.19 HER17_RS11100 NAD(P)H nitroreductase 0.15 HER17_RS18795 transcriptional repressor LexA — —

Not shown: 8 genomes with orthologs for SMc01012 only; 16 genomes with orthologs for SMc01183 only