Conservation of cofitness between RR42_RS07580 and RR42_RS06090 in Cupriavidus basilensis FW507-4G11

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS07580 helicase 1.0 RR42_RS06090 single-stranded DNA exonuclease 0.68 3
Ralstonia solanacearum UW163 0.72 UW163_RS14840 ATP-dependent DNA helicase 0.78 UW163_RS12210 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum IBSBF1503 0.72 RALBFv3_RS01530 ATP-dependent DNA helicase 0.78 RALBFv3_RS14740 single-stranded-DNA-specific exonuclease RecJ low > 76
Ralstonia sp. UNC404CL21Col 0.72 ABZR87_RS13325 ATP-dependent DNA helicase 0.75 ABZR87_RS10395 single-stranded-DNA-specific exonuclease RecJ low > 80
Ralstonia solanacearum PSI07 0.72 RPSI07_RS15960 ATP-dependent DNA helicase 0.77 RPSI07_RS18620 single-stranded-DNA-specific exonuclease RecJ — —
Ralstonia solanacearum GMI1000 0.71 RS_RS08195 ATP-dependent DNA helicase 0.78 RS_RS05550 single-stranded-DNA-specific exonuclease RecJ low > 80
Paraburkholderia bryophila 376MFSha3.1 0.63 H281DRAFT_00533 ATP-dependent DNA helicase DinG 0.68 H281DRAFT_00488 exonuclease RecJ low > 103
Burkholderia phytofirmans PsJN 0.63 BPHYT_RS12495 helicase 0.66 BPHYT_RS12730 single-stranded DNA exonuclease low > 109
Paraburkholderia sabiae LMG 24235 0.62 QEN71_RS06060 ATP-dependent DNA helicase 0.69 QEN71_RS05835 single-stranded-DNA-specific exonuclease RecJ low > 153
Paraburkholderia graminis OAS925 0.61 ABIE53_002724 ATP-dependent DNA helicase DinG 0.66 ABIE53_002771 single-stranded-DNA-specific exonuclease 0.34 41
Herbaspirillum seropedicae SmR1 0.60 HSERO_RS14855 helicase 0.69 HSERO_RS13965 single-stranded DNA exonuclease low > 78
Dechlorosoma suillum PS 0.52 Dsui_2149 DNA helicase, Rad3 0.56 Dsui_2860 single-stranded-DNA-specific exonuclease RecJ — —
Castellaniella sp019104865 MT123 0.42 ABCV34_RS01875 ATP-dependent DNA helicase 0.55 ABCV34_RS05005 single-stranded-DNA-specific exonuclease RecJ low > 48
Kangiella aquimarina DSM 16071 0.38 B158DRAFT_2492 Rad3-related DNA helicases 0.43 B158DRAFT_2268 single-stranded-DNA-specific exonuclease RecJ 0.52 17
Dickeya dadantii 3937 0.37 DDA3937_RS11240 ATP-dependent DNA helicase 0.43 DDA3937_RS03310 single-stranded-DNA-specific exonuclease RecJ low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF2823 DinG family ATP-dependent helicase YoaA 0.42 GFF2989 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 78
Alteromonas macleodii MIT1002 0.37 MIT1002_02593 putative ATP-dependent helicase DinG 0.45 MIT1002_00788 Single-stranded-DNA-specific exonuclease RecJ low > 70
Escherichia coli BL21 0.37 ECD_01778 putative ATP-dependent helicase, DinG family 0.42 ECD_02724 ssDNA exonuclease, 5 — —
Escherichia coli Nissle 1917 0.37 ECOLIN_RS10055 ATP-dependent DNA helicase 0.42 ECOLIN_RS16115 single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.37 OHPLBJKB_01925 putative ATP-dependent helicase DinG 0.42 OHPLBJKB_00823 Single-stranded-DNA-specific exonuclease RecJ low > 73
Escherichia coli ECOR27 0.37 NOLOHH_17100 yoaA putative ATP-dependent DNA helicase YoaA 0.42 NOLOHH_11505 recJ single-stranded-DNA-specific exonuclease RecJ low > 75
Escherichia coli ECRC100 0.37 OKFHMN_26580 yoaA putative ATP-dependent DNA helicase YoaA 0.42 OKFHMN_19580 recJ single-stranded-DNA-specific exonuclease RecJ low > 80
Escherichia coli ECRC98 0.37 JDDGAC_01155 yoaA putative ATP-dependent DNA helicase YoaA 0.42 JDDGAC_23220 recJ single-stranded-DNA-specific exonuclease RecJ low > 86
Escherichia coli ECRC102 0.37 NIAGMN_01485 yoaA putative ATP-dependent DNA helicase YoaA 0.42 NIAGMN_17345 recJ single-stranded-DNA-specific exonuclease RecJ — —
Escherichia coli ECRC62 0.37 BNILDI_15885 yoaA putative ATP-dependent DNA helicase YoaA 0.42 BNILDI_10035 recJ single-stranded-DNA-specific exonuclease RecJ low > 75
Escherichia coli ECRC101 0.37 MCAODC_18830 yoaA putative ATP-dependent DNA helicase YoaA 0.42 MCAODC_10100 recJ single-stranded-DNA-specific exonuclease RecJ low > 87
Escherichia coli ECOR38 0.37 HEPCGN_04970 yoaA putative ATP-dependent DNA helicase YoaA 0.42 HEPCGN_18870 recJ single-stranded-DNA-specific exonuclease RecJ low > 87
Escherichia coli ECRC99 0.37 KEDOAH_01530 yoaA putative ATP-dependent DNA helicase YoaA 0.42 KEDOAH_08560 recJ single-stranded-DNA-specific exonuclease RecJ — —
Rhodanobacter denitrificans FW104-10B01 0.37 LRK54_RS12765 ATP-dependent DNA helicase 0.41 LRK54_RS00315 single-stranded-DNA-specific exonuclease RecJ low > 59
Rhodanobacter denitrificans MT42 0.37 LRK55_RS12465 ATP-dependent DNA helicase 0.21 LRK55_RS18310 DHHA1 domain-containing protein low > 63
Escherichia fergusonii Becca 0.37 EFB2_02192 putative ATP-dependent DNA helicase YoaA 0.42 EFB2_01009 Single-stranded-DNA-specific exonuclease RecJ low > 86
Dickeya dianthicola 67-19 0.37 HGI48_RS11275 ATP-dependent DNA helicase 0.43 HGI48_RS03450 single-stranded-DNA-specific exonuclease RecJ low > 71
Pantoea sp. MT58 0.37 IAI47_08820 ATP-dependent DNA helicase 0.43 IAI47_03830 single-stranded-DNA-specific exonuclease RecJ low > 76
Escherichia coli BW25113 0.37 b1808 yoaA conserved protein with nucleoside triphosphate hydrolase domain (NCBI) 0.42 b2892 recJ ssDNA exonuclease, 5' --> 3'-specific (NCBI) low > 76
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0750 Rad3-related DNA helicases 0.41 EX28DRAFT_2943 single-stranded-DNA-specific exonuclease RecJ low > 76
Dickeya dianthicola ME23 0.37 DZA65_RS11620 ATP-dependent DNA helicase 0.43 DZA65_RS03495 single-stranded-DNA-specific exonuclease RecJ low > 75
Rhodanobacter sp. FW510-T8 0.37 OKGIIK_02195 dinG helicase 0.39 OKGIIK_06995 recJ single-stranded-DNA-specific exonuclease RecJ low > 52
Serratia liquefaciens MT49 0.37 IAI46_14550 ATP-dependent DNA helicase 0.45 IAI46_20720 single-stranded-DNA-specific exonuclease RecJ low > 86
Enterobacter sp. TBS_079 0.37 MPMX20_02714 putative ATP-dependent DNA helicase YoaA 0.41 MPMX20_03751 Single-stranded-DNA-specific exonuclease RecJ low > 85
Rahnella sp. WP5 0.36 EX31_RS10615 ATP-dependent DNA helicase 0.44 EX31_RS13470 single-stranded-DNA-specific exonuclease RecJ low > 89
Klebsiella michiganensis M5al 0.36 BWI76_RS17815 ATP-dependent helicase 0.40 BWI76_RS23805 ssDNA exonuclease RecJ low > 92
Dyella japonica UNC79MFTsu3.2 0.36 ABZR86_RS19750 ATP-dependent DNA helicase 0.41 ABZR86_RS02800 single-stranded-DNA-specific exonuclease RecJ low > 74
Pectobacterium carotovorum WPP14 0.36 HER17_RS11290 ATP-dependent DNA helicase 0.41 HER17_RS17880 single-stranded-DNA-specific exonuclease RecJ low > 75
Erwinia tracheiphila SCR3 0.36 LU632_RS13150 ATP-dependent DNA helicase 0.42 LU632_RS05985 recJ single-stranded-DNA-specific exonuclease RecJ low > 74
Xanthomonas campestris pv. campestris strain 8004 0.36 Xcc-8004.1496.1 DinG family ATP-dependent helicase YoaA 0.42 Xcc-8004.2909.1 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) low > 74
Vibrio cholerae E7946 ATCC 55056 0.35 CSW01_09930 ATP-dependent DNA helicase 0.43 CSW01_12240 single-stranded-DNA-specific exonuclease RecJ low > 62
Acidovorax sp. GW101-3H11 0.34 Ac3H11_2460 DinG family ATP-dependent helicase YoaA 0.54 Ac3H11_1746 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Variovorax sp. OAS795 0.33 ABID97_RS14180 ATP-dependent DNA helicase 0.55 ABID97_RS22940 single-stranded-DNA-specific exonuclease RecJ low > 91
Variovorax sp. SCN45 0.33 GFF986 DinG family ATP-dependent helicase YoaA 0.56 GFF6700 Single-stranded-DNA-specific exonuclease RecJ low > 127
Shewanella loihica PV-4 0.32 Shew_2196 helicase c2 (RefSeq) 0.45 Shew_0772 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.78 7
Shewanella oneidensis MR-1 0.31 SO2081 ATP-dependent helicase, DinG family (NCBI ptt file) 0.47 SO0952 recJ single-stranded-DNA-specific exonuclease RecJ (NCBI ptt file) 0.19 54
Shewanella sp. ANA-3 0.31 Shewana3_1859 helicase c2 (RefSeq) 0.46 Shewana3_3329 single-stranded-DNA-specific exonuclease RecJ (RefSeq) low > 73
Hydrogenophaga sp. GW460-11-11-14-LB1 0.30 GFF4872 DinG family ATP-dependent helicase YoaA 0.51 GFF739 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Shewanella amazonensis SB2B 0.15 Sama_1940 ATP-dependent helicase DinG (RefSeq) 0.46 Sama_2737 single-stranded-DNA-specific exonuclease RecJ (RefSeq) 0.79 2
Pseudomonas fluorescens SBW25-INTG 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.49 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas fluorescens SBW25 0.15 PFLU_RS06540 ATP-dependent DNA helicase DinG 0.49 PFLU_RS24515 single-stranded-DNA-specific exonuclease RecJ low > 109
Pseudomonas fluorescens FW300-N1B4 0.15 Pf1N1B4_3194 ATP-dependent helicase DinG/Rad3 0.48 Pf1N1B4_3020 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) — —
Pseudomonas fluorescens GW456-L13 0.15 PfGW456L13_4624 ATP-dependent helicase DinG/Rad3 0.48 PfGW456L13_1730 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.29 55
Pseudomonas fluorescens FW300-N2C3 0.15 AO356_05425 ATP-dependent DNA helicase DinG 0.48 AO356_06345 single-stranded-DNA-specific exonuclease RecJ low > 104
Pseudomonas fluorescens FW300-N2E2 0.15 Pf6N2E2_2942 ATP-dependent helicase DinG/Rad3 0.48 Pf6N2E2_3137 Single-stranded-DNA-specific exonuclease RecJ (EC 3.1.-.-) 0.50 7
Marinobacter adhaerens HP15 0.15 HP15_1856 helicase c2 0.44 HP15_766 bacterial RecJ exonuclease 0.44 30
Pseudomonas simiae WCS417 0.15 PS417_06510 ATP-dependent DNA helicase DinG 0.48 PS417_22855 ssDNA exonuclease RecJ low > 88
Pseudomonas sp. RS175 0.15 PFR28_00520 ATP-dependent DNA helicase DinG 0.48 PFR28_00339 Single-stranded-DNA-specific exonuclease RecJ low > 88
Pseudomonas fluorescens FW300-N2E3 0.15 AO353_17020 ATP-dependent DNA helicase DinG 0.47 AO353_04320 single-stranded-DNA-specific exonuclease RecJ 0.48 14
Pseudomonas putida KT2440 0.15 PP_1125 putative Helicase 0.49 PP_1477 ssDNA-specific exonuclease RecJ low > 96
Pseudomonas syringae pv. syringae B728a 0.15 Psyr_3856 Helicase c2 0.48 Psyr_1298 exonuclease RecJ low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.15 Psyr_3856 Helicase c2 0.48 Psyr_1298 exonuclease RecJ low > 86
Pseudomonas sp. S08-1 0.15 OH686_04830 ATP-dependent helicase DinG/Rad3 0.48 OH686_06955 single-stranded-DNA-specific exonuclease RecJ low > 80
Pseudomonas stutzeri RCH2 0.14 Psest_2857 Rad3-related DNA helicases 0.45 Psest_1544 single-stranded-DNA-specific exonuclease RecJ low > 67

Not shown: 5 genomes with orthologs for RR42_RS07580 only; 28 genomes with orthologs for RR42_RS06090 only