Conservation of cofitness between RR42_RS00615 and RR42_RS04475 in Cupriavidus basilensis FW507-4G11

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Cupriavidus basilensis FW507-4G11 1.0 RR42_RS00615 recombinase XerC 1.0 RR42_RS04475 3-phosphoshikimate 1-carboxyvinyltransferase 0.38 16
Ralstonia solanacearum PSI07 0.55 RPSI07_RS23690 tyrosine recombinase XerC 0.76 RPSI07_RS19695 3-phosphoshikimate 1-carboxyvinyltransferase — —
Ralstonia solanacearum GMI1000 0.54 RS_RS00260 Tyrosine recombinase XerC 1 0.77 RS_RS04510 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia sp. UNC404CL21Col 0.52 ABZR87_RS05065 tyrosine recombinase XerC 0.76 ABZR87_RS09465 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Ralstonia solanacearum IBSBF1503 0.52 RALBFv3_RS09675 tyrosine recombinase XerC 0.76 RALBFv3_RS13775 3-phosphoshikimate 1-carboxyvinyltransferase low > 76
Ralstonia solanacearum UW163 0.52 UW163_RS03905 tyrosine recombinase XerC 0.76 UW163_RS16035 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS00355 tyrosine recombinase XerC 0.70 QEN71_RS04085 3-phosphoshikimate 1-carboxyvinyltransferase — —
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS01655 tyrosine recombinase XerC 0.69 BPHYT_RS14895 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia bryophila 376MFSha3.1 0.43 H281DRAFT_02202 integrase/recombinase XerC 0.69 H281DRAFT_03922 3-phosphoshikimate 1-carboxyvinyltransferase — —
Paraburkholderia graminis OAS925 0.43 ABIE53_000426 integrase/recombinase XerC 0.67 ABIE53_003154 3-phosphoshikimate 1-carboxyvinyltransferase — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS21475 recombinase XerC 0.62 HSERO_RS18420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a ΔmexB 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas syringae pv. syringae B728a 0.32 Psyr_0185 tyrosine recombinase XerC subunit 0.25 Psyr_0888 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dyella japonica UNC79MFTsu3.2 0.32 ABZR86_RS15025 tyrosine recombinase XerC 0.18 ABZR86_RS02230 3-phosphoshikimate 1-carboxyvinyltransferase low > 74
Pantoea sp. MT58 0.32 IAI47_18400 tyrosine recombinase XerC 0.51 IAI47_12860 3-phosphoshikimate 1-carboxyvinyltransferase — —
Serratia liquefaciens MT49 0.32 IAI46_00725 tyrosine recombinase XerC 0.51 IAI46_08640 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF239 Tyrosine recombinase XerC 0.50 GFF3665 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) — —
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_15325 xerC tyrosine recombinase XerC 0.18 OKGIIK_06920 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Klebsiella michiganensis M5al 0.31 BWI76_RS01210 tyrosine recombinase XerC 0.50 BWI76_RS09760 3-phosphoshikimate 1-carboxyvinyltransferase low > 92
Rahnella sp. WP5 0.31 EX31_RS15165 tyrosine recombinase XerC 0.53 EX31_RS18250 3-phosphoshikimate 1-carboxyvinyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.31 Xcc-8004.847.1 Site-specific tyrosine recombinase 0.14 Xcc-8004.3281.1 5-Enolpyruvylshikimate-3-phosphate synthase (EC 2.5.1.19) — —
Lysobacter sp. OAE881 0.31 ABIE51_RS03035 tyrosine recombinase XerC 0.18 ABIE51_RS12135 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC100 0.31 OKFHMN_14420 xerC tyrosine recombinase XerC 0.50 OKFHMN_05485 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 80
Escherichia coli ECRC101 0.31 MCAODC_04925 xerC tyrosine recombinase XerC 0.50 MCAODC_24875 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC102 0.31 NIAGMN_12175 xerC tyrosine recombinase XerC 0.50 NIAGMN_03205 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodanobacter denitrificans MT42 0.31 LRK55_RS08300 tyrosine recombinase XerC 0.17 LRK55_RS00130 3-phosphoshikimate 1-carboxyvinyltransferase low > 63
Escherichia coli ECRC99 0.31 KEDOAH_13730 xerC tyrosine recombinase XerC 0.50 KEDOAH_22250 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC98 0.31 JDDGAC_18045 xerC tyrosine recombinase XerC 0.50 JDDGAC_09095 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Dickeya dadantii 3937 0.31 DDA3937_RS19890 tyrosine recombinase XerC 0.50 DDA3937_RS09675 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECOR38 0.31 HEPCGN_13125 xerC tyrosine recombinase XerC 0.50 HEPCGN_23035 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 87
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4480 tyrosine recombinase XerC 0.51 EX28DRAFT_2027 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.31 OHPLBJKB_04239 Tyrosine recombinase XerC 0.50 OHPLBJKB_02760 3-phosphoshikimate 1-carboxyvinyltransferase low > 73
Escherichia coli Nissle 1917 0.31 ECOLIN_RS21875 tyrosine recombinase XerC 0.50 ECOLIN_RS04810 3-phosphoshikimate 1-carboxyvinyltransferase low > 55
Escherichia coli ECOR27 0.31 NOLOHH_06550 xerC tyrosine recombinase XerC 0.50 NOLOHH_22045 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Escherichia fergusonii Becca 0.31 EFB2_04826 Tyrosine recombinase XerC 0.50 EFB2_03156 3-phosphoshikimate 1-carboxyvinyltransferase low > 86
Escherichia coli BL21 0.31 ECD_03687 site-specific tyrosine recombinase 0.50 ECD_00912 5-enolpyruvylshikimate-3-phosphate synthetase 0.38 47
Escherichia coli BW25113 0.31 b3811 xerC site-specific tyrosine recombinase XerC (NCBI) 0.50 b0908 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) low > 76
Shewanella loihica PV-4 0.31 Shew_0325 tyrosine recombinase XerC (RefSeq) 0.55 Shew_1952 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 60
Dickeya dianthicola 67-19 0.31 HGI48_RS20045 tyrosine recombinase XerC 0.50 HGI48_RS09685 3-phosphoshikimate 1-carboxyvinyltransferase — —
Escherichia coli ECRC62 0.31 BNILDI_04985 xerC tyrosine recombinase XerC 0.50 BNILDI_20300 aroA 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Dickeya dianthicola ME23 0.30 DZA65_RS21090 tyrosine recombinase XerC 0.50 DZA65_RS09995 3-phosphoshikimate 1-carboxyvinyltransferase — —
Shewanella oneidensis MR-1 0.30 SO4306 xerC integrase/recombinase XerC (NCBI ptt file) 0.54 SO2404 aroA 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.30 Shewana3_0393 tyrosine recombinase XerC (RefSeq) 0.54 Shewana3_1975 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 73
Pectobacterium carotovorum WPP14 0.30 HER17_RS01350 tyrosine recombinase XerC 0.50 HER17_RS12285 3-phosphoshikimate 1-carboxyvinyltransferase low > 75
Shewanella amazonensis SB2B 0.30 Sama_3247 integrase/recombinase XerC (RefSeq) 0.55 Sama_1734 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) low > 62
Enterobacter sp. TBS_079 0.30 MPMX20_04465 Tyrosine recombinase XerC 0.51 MPMX20_01567 3-phosphoshikimate 1-carboxyvinyltransferase low > 85
Rhodanobacter denitrificans FW104-10B01 0.29 LRK54_RS08535 tyrosine recombinase XerC 0.16 LRK54_RS00390 3-phosphoshikimate 1-carboxyvinyltransferase — —
Erwinia tracheiphila SCR3 0.29 LU632_RS24135 xerC tyrosine recombinase XerC 0.48 LU632_RS09795 aroA 3-phosphoshikimate 1-carboxyvinyltransferase — —
Pseudomonas fluorescens SBW25 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.22 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas fluorescens SBW25-INTG 0.29 PFLU_RS29280 tyrosine recombinase XerC 0.22 PFLU_RS13540 3-phosphoshikimate 1-carboxyvinyltransferase low > 109
Pseudomonas simiae WCS417 0.29 PS417_27595 recombinase XerC 0.22 PS417_12855 3-phosphoshikimate 1-carboxyvinyltransferase low > 88
Kangiella aquimarina DSM 16071 0.28 B158DRAFT_0244 tyrosine recombinase XerC subunit 0.22 B158DRAFT_2432 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) low > 40
Alteromonas macleodii MIT1002 0.28 MIT1002_00157 Tyrosine recombinase XerC 0.52 MIT1002_02191 3-phosphoshikimate 1-carboxyvinyltransferase — —
Vibrio cholerae E7946 ATCC 55056 0.26 CSW01_00650 tyrosine recombinase XerC 0.52 CSW01_08705 3-phosphoshikimate 1-carboxyvinyltransferase low > 62
Bacteroides ovatus ATCC 8483 0.23 BACOVA_01050 site-specific recombinase, phage integrase family/ribosomal subunit interface protein 0.25 BACOVA_03157 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhodospirillum rubrum S1H 0.22 Rru_A1220 Phage integrase (NCBI) 0.14 Rru_A0295 3-phosphoshikimate 1-carboxyvinyltransferase (NCBI) — —
Bifidobacterium breve UCC2003 0.22 BBR_RS16655 tyrosine recombinase XerC 0.17 BBR_RS14370 3-phosphoshikimate 1-carboxyvinyltransferase low > 34
Dinoroseobacter shibae DFL-12 0.22 Dshi_5002 xerC hypothetical protein (NCBI) 0.15 Dshi_1022 3-phosphoshikimate 1-carboxyvinyltransferase (RefSeq) — —
Rhodopseudomonas palustris CGA009 0.22 TX73_000945 tyrosine recombinase XerC 0.14 TX73_000320 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum brasilense Sp245 0.22 AZOBR_RS03965 tyrosine recombinase XerC 0.13 AZOBR_RS03090 3-phosphoshikimate 1-carboxyvinyltransferase — —
Rhizobium sp. OAE497 0.21 ABIE40_RS17950 tyrosine recombinase XerC 0.24 ABIE40_RS05420 3-phosphoshikimate 1-carboxyvinyltransferase — —
Magnetospirillum magneticum AMB-1 0.21 AMB_RS21485 tyrosine recombinase XerC 0.14 AMB_RS21555 3-phosphoshikimate 1-carboxyvinyltransferase — —
Bosea sp. OAE506 0.21 ABIE41_RS07870 tyrosine recombinase XerC 0.14 ABIE41_RS03910 3-phosphoshikimate 1-carboxyvinyltransferase — —
Azospirillum sp. SherDot2 0.21 MPMX19_02110 Tyrosine recombinase XerC 0.13 MPMX19_02233 3-phosphoshikimate 1-carboxyvinyltransferase — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c05760 putative tyrosine recombinase XerC 0.15 PGA1_c04810 3-phosphoshikimate 1-carboxyvinyltransferase AroA — —
Sinorhizobium meliloti 1021 0.20 SMc02489 site-specific tyrosine recombinase XerC 0.16 SMc00333 3-phosphoshikimate 1-carboxyvinyltransferase — —
Agrobacterium fabrum C58 0.20 Atu2628 site-specific recombinase 0.23 Atu0642 3-phosphoshikimate 1-carboxyvinyltransferase — —
Brevundimonas sp. GW460-12-10-14-LB2 0.19 A4249_RS12210 tyrosine recombinase XerC 0.16 A4249_RS10920 3-phosphoshikimate 1-carboxyvinyltransferase — —
Sphingomonas koreensis DSMZ 15582 0.19 Ga0059261_2764 Site-specific recombinase XerD 0.15 Ga0059261_0167 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19) — —

Not shown: 16 genomes with orthologs for RR42_RS00615 only; 18 genomes with orthologs for RR42_RS04475 only