Conservation of cofitness between QEN71_RS00175 and QEN71_RS28080 in Paraburkholderia sabiae LMG 24235

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 1.0 QEN71_RS28080 diaminopimelate decarboxylase 0.62 7
Paraburkholderia bryophila 376MFSha3.1 0.82 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase 0.85 H281DRAFT_05606 diaminopimelate decarboxylase — —
Paraburkholderia graminis OAS925 0.80 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase 0.85 ABIE53_003749 diaminopimelate decarboxylase low > 113
Burkholderia phytofirmans PsJN 0.80 BPHYT_RS01475 16S rRNA methyltransferase 0.86 BPHYT_RS17930 diaminopimelate decarboxylase low > 109
Ralstonia solanacearum PSI07 0.48 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.73 RPSI07_RS10250 diaminopimelate decarboxylase — —
Ralstonia sp. UNC404CL21Col 0.47 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.71 ABZR87_RS02640 diaminopimelate decarboxylase low > 80
Ralstonia solanacearum IBSBF1503 0.46 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.73 RALBFv3_RS06990 diaminopimelate decarboxylase — —
Ralstonia solanacearum UW163 0.46 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.73 UW163_RS06625 diaminopimelate decarboxylase — —
Ralstonia solanacearum GMI1000 0.46 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.73 RS_RS14930 diaminopimelate decarboxylase — —
Cupriavidus basilensis FW507-4G11 0.45 RR42_RS20450 16S rRNA methyltransferase 0.69 RR42_RS19050 diaminopimelate decarboxylase — —
Herbaspirillum seropedicae SmR1 0.41 HSERO_RS00355 methyltransferase 0.62 HSERO_RS00950 diaminopimelate decarboxylase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.58 GFF1341 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 90
Variovorax sp. SCN45 0.35 GFF5878 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) 0.58 GFF5315 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Castellaniella sp019104865 MT123 0.35 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.60 ABCV34_RS12685 diaminopimelate decarboxylase — —
Acidovorax sp. GW101-3H11 0.34 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.21 Ac3H11_3862 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Dechlorosoma suillum PS 0.33 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.64 Dsui_1182 diaminopimelate decarboxylase — —
Variovorax sp. OAS795 0.33 ABID97_RS05360 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.58 ABID97_RS23305 diaminopimelate decarboxylase — —
Dickeya dianthicola 67-19 0.31 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.20 HGI48_RS00505 type III PLP-dependent enzyme low > 71
Dickeya dianthicola ME23 0.31 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.20 DZA65_RS00505 type III PLP-dependent enzyme low > 75
Dickeya dadantii 3937 0.31 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.20 DDA3937_RS20740 type III PLP-dependent enzyme low > 74
Enterobacter sp. TBS_079 0.30 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B 0.18 MPMX20_03705 Diaminopimelate decarboxylase low > 85
Escherichia coli ECOR38 0.30 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 HEPCGN_19565 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC62 0.30 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.18 BNILDI_10310 lysA diaminopimelate decarboxylase low > 75
Escherichia coli ECOR27 0.30 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.18 NOLOHH_11830 lysA diaminopimelate decarboxylase low > 75
Escherichia coli BL21 0.30 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent 0.18 ECD_02686 diaminopimelate decarboxylase, PLP-binding low > 61
Escherichia coli BW25113 0.30 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) 0.18 b2838 lysA diaminopimelate decarboxylase, PLP-binding (NCBI) low > 76
Escherichia coli HS(pFamp)R (ATCC 700891) 0.30 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B 0.18 OHPLBJKB_00891 Diaminopimelate decarboxylase low > 73
Escherichia coli Nissle 1917 0.29 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 ECOLIN_RS15930 diaminopimelate decarboxylase low > 55
Escherichia fergusonii Becca 0.29 EFB2_00535 Ribosomal RNA small subunit methyltransferase B 0.19 EFB2_01045 Diaminopimelate decarboxylase low > 86
Escherichia coli ECRC98 0.29 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 JDDGAC_23610 lysA diaminopimelate decarboxylase low > 86
Escherichia coli ECRC101 0.29 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 MCAODC_10470 lysA diaminopimelate decarboxylase low > 87
Escherichia coli ECRC99 0.29 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 KEDOAH_08185 lysA diaminopimelate decarboxylase — —
Escherichia coli ECRC100 0.29 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 OKFHMN_19945 lysA diaminopimelate decarboxylase low > 80
Escherichia coli ECRC102 0.29 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 NIAGMN_17715 lysA diaminopimelate decarboxylase — —
Erwinia tracheiphila SCR3 0.29 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.19 LU632_RS06040 lysA diaminopimelate decarboxylase low > 74
Pantoea sp. MT58 0.29 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.17 IAI47_03860 diaminopimelate decarboxylase low > 76
Rahnella sp. WP5 0.29 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.21 EX31_RS02420 type III PLP-dependent enzyme low > 89
Pectobacterium carotovorum WPP14 0.29 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.16 HER17_RS03710 diaminopimelate decarboxylase low > 75
Enterobacter asburiae PDN3 0.29 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.18 EX28DRAFT_2916 diaminopimelate decarboxylase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.29 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 0.19 GFF1925 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 78
Marinobacter adhaerens HP15 0.28 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase 0.58 HP15_247 diaminopimelate decarboxylase — —
Klebsiella michiganensis M5al 0.28 BWI76_RS25680 16S rRNA m5C967 methyltransferase 0.18 BWI76_RS23360 diaminopimelate decarboxylase low > 92
Shewanella amazonensis SB2B 0.27 Sama_0041 sun protein (RefSeq) 0.54 Sama_3250 diaminopimelate decarboxylase (RefSeq) low > 62
Serratia liquefaciens MT49 0.27 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.17 IAI46_20520 diaminopimelate decarboxylase low > 86
Alteromonas macleodii MIT1002 0.27 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B 0.59 MIT1002_00160 Diaminopimelate decarboxylase low > 70
Pseudomonas sp. S08-1 0.27 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase 0.57 OH686_13800 diaminopimelate decarboxylase low > 80
Pseudomonas syringae pv. syringae B728a ΔmexB 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.59 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas syringae pv. syringae B728a 0.26 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.59 Psyr_0182 diaminopimelate decarboxylase — —
Pseudomonas stutzeri RCH2 0.26 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB 0.60 Psest_3764 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E3 0.26 AO353_10630 16S rRNA methyltransferase 0.57 AO353_09035 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N2E2 0.26 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.58 Pf6N2E2_4419 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas simiae WCS417 0.25 PS417_00085 16S rRNA methyltransferase 0.57 PS417_27580 diaminopimelate decarboxylase — —
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.59 Pf1N1B4_2174 Diaminopimelate decarboxylase (EC 4.1.1.20) — —
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_11275 16S rRNA methyltransferase 0.58 AO356_12740 diaminopimelate decarboxylase — —
Pseudomonas fluorescens SBW25 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.57 PFLU_RS29265 diaminopimelate decarboxylase low > 109
Pseudomonas fluorescens SBW25-INTG 0.25 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.57 PFLU_RS29265 diaminopimelate decarboxylase — —
Shewanella loihica PV-4 0.25 Shew_3738 sun protein (RefSeq) 0.59 Shew_0322 diaminopimelate decarboxylase (RefSeq) low > 60
Pseudomonas putida KT2440 0.25 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.60 PP_5227 diaminopimelate decarboxylase low > 96
Shewanella sp. ANA-3 0.25 Shewana3_0033 sun protein (RefSeq) 0.60 Shewana3_0390 diaminopimelate decarboxylase (RefSeq) low > 73
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) 0.59 PfGW456L13_845 Diaminopimelate decarboxylase (EC 4.1.1.20) low > 87
Pseudomonas sp. RS175 0.25 PFR28_04663 Ribosomal RNA small subunit methyltransferase B 0.58 PFR28_04375 Diaminopimelate decarboxylase — —
Shewanella oneidensis MR-1 0.24 SO0030 sun sun protein (NCBI ptt file) 0.62 SO4309 lysA diaminopimelate decarboxylase (NCBI ptt file) low > 76
Lysobacter sp. OAE881 0.23 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.35 ABIE51_RS13675 diaminopimelate decarboxylase low > 62
Acinetobacter radioresistens SK82 0.23 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B 0.56 MPMX26_02232 Diaminopimelate decarboxylase low > 36
Caulobacter crescentus NA1000 0.18 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.39 CCNA_02296 diaminopimelate decarboxylase — —
Caulobacter crescentus NA1000 Δfur 0.18 CCNA_00101 16S rRNA m5C methyltransferase RsmB 0.39 CCNA_02296 diaminopimelate decarboxylase — —
Rhodopseudomonas palustris CGA009 0.17 TX73_000155 transcription antitermination factor NusB 0.44 TX73_024635 diaminopimelate decarboxylase — —
Azospirillum sp. SherDot2 0.16 MPMX19_02327 Ribosomal RNA small subunit methyltransferase B 0.47 MPMX19_05819 Diaminopimelate decarboxylase — —
Azospirillum brasilense Sp245 0.16 AZOBR_RS00235 MFS transporter 0.48 AZOBR_RS16945 diaminopimelate decarboxylase — —
Dinoroseobacter shibae DFL-12 0.16 Dshi_3033 Fmu (Sun) domain protein (RefSeq) 0.42 Dshi_3059 diaminopimelate decarboxylase (RefSeq) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.13 A4249_RS13165 RsmB/NOP family class I SAM-dependent RNA methyltransferase 0.37 A4249_RS12545 diaminopimelate decarboxylase low > 48

Not shown: 1 genomes with orthologs for QEN71_RS00175 only; 30 genomes with orthologs for QEN71_RS28080 only