| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS28940 | | RNA polymerase sigma factor FliA | 1.0 | QEN71_RS15185 | | RNA polymerase sigma factor RpoD | 0.90 | 17 |
| Paraburkholderia graminis OAS925 | 0.97 | ABIE53_000108 | | RNA polymerase sigma factor for flagellar operon FliA | 0.89 | ABIE53_004866 | | RNA polymerase primary sigma factor | low | > 113 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.97 | H281DRAFT_05756 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.89 | H281DRAFT_06008 | | RNA polymerase, sigma 70 subunit, RpoD | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.96 | BPHYT_RS18925 | | RNA polymerase sigma70 | 0.88 | BPHYT_RS33535 | | RNA polymerase sigma factor RpoD | low | > 109 |
| Ralstonia solanacearum UW163 | 0.62 | UW163_RS21665 | | RNA polymerase sigma factor FliA | 0.74 | UW163_RS09995 | | RNA polymerase sigma factor RpoD | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.62 | RALBFv3_RS17485 | | RNA polymerase sigma factor FliA | 0.74 | RALBFv3_RS03675 | | RNA polymerase sigma factor RpoD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.62 | ABZR87_RS18040 | | RNA polymerase sigma factor FliA | 0.74 | ABZR87_RS15600 | | RNA polymerase sigma factor RpoD | — | — |
| Ralstonia solanacearum GMI1000 | 0.62 | RS_RS23830 | | RNA polymerase sigma factor FliA | 0.74 | RS_RS11120 | | RNA polymerase sigma factor RpoD | — | — |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS06165 | | RNA polymerase sigma factor FliA | 0.74 | RPSI07_RS13555 | | RNA polymerase sigma factor RpoD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.60 | RR42_RS35750 | | DNA-directed RNA polymerase sigma-70 factor | 0.75 | RR42_RS14965 | | hypothetical protein | low | > 128 |
| Variovorax sp. SCN45 | 0.59 | GFF5774 | | RNA polymerase sigma factor for flagellar operon | 0.60 | GFF2879 | | RNA polymerase sigma factor RpoD | — | — |
| Dechlorosoma suillum PS | 0.56 | Dsui_1726 | | RNA polymerase sigma factor, FliA/WhiG family | 0.63 | Dsui_1209 | | RNA polymerase sigma factor, sigma-70 family | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.54 | GFF1428 | | RNA polymerase sigma factor for flagellar operon | 0.59 | GFF3822 | | RNA polymerase sigma factor RpoD | — | — |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_1381 | | RNA polymerase sigma factor for flagellar operon | 0.59 | Ac3H11_194 | | RNA polymerase sigma factor RpoD | — | — |
| Erwinia tracheiphila SCR3 | 0.52 | LU632_RS13785 | | RNA polymerase sigma factor FliA | 0.46 | LU632_RS20725 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Pantoea sp. MT58 | 0.51 | IAI47_08160 | | RNA polymerase sigma factor FliA | 0.46 | IAI47_03050 | | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli ECRC102 | 0.50 | NIAGMN_02270 | fliA | RNA polymerase sigma factor FliA | 0.46 | NIAGMN_16420 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Escherichia fergusonii Becca | 0.50 | EFB2_02023 | | RNA polymerase sigma factor FliA | 0.46 | EFB2_00744 | | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli ECRC101 | 0.50 | MCAODC_19610 | fliA | RNA polymerase sigma factor FliA | 0.46 | MCAODC_09170 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli BW25113 | 0.50 | b1922 | fliA | flagellar biosynthesis; alternative sigma factor 28; regulation of flagellar operons (VIMSS) | 0.46 | b3067 | rpoD | RNA polymerase sigma factor (NCBI) | — | — |
| Escherichia coli ECRC100 | 0.50 | OKFHMN_25780 | fliA | RNA polymerase sigma factor FliA | 0.46 | OKFHMN_18655 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli ECRC98 | 0.50 | JDDGAC_00370 | fliA | RNA polymerase sigma factor FliA | 0.46 | JDDGAC_22290 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.50 | OHPLBJKB_01807 | | RNA polymerase sigma factor FliA | 0.46 | OHPLBJKB_00635 | | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli ECRC62 | 0.50 | BNILDI_15190 | fliA | RNA polymerase sigma factor FliA | 0.46 | BNILDI_01070 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli ECRC99 | 0.50 | KEDOAH_02310 | fliA | RNA polymerase sigma factor FliA | 0.46 | KEDOAH_09490 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli ECOR38 | 0.50 | HEPCGN_04135 | fliA | RNA polymerase sigma factor FliA | 0.46 | HEPCGN_17510 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Escherichia coli ECOR27 | 0.50 | NOLOHH_16400 | fliA | RNA polymerase sigma factor FliA | 0.46 | NOLOHH_10445 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Serratia liquefaciens MT49 | 0.50 | IAI46_15785 | | RNA polymerase sigma factor FliA | 0.47 | IAI46_22125 | | RNA polymerase sigma factor RpoD | — | — |
| Rahnella sp. WP5 | 0.50 | EX31_RS09450 | | RNA polymerase sigma factor FliA | 0.46 | EX31_RS08195 | | RNA polymerase sigma factor RpoD | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.50 | GFF1690 | | RNA polymerase sigma factor for flagellar operon | 0.47 | GFF3177 | | RNA polymerase sigma factor RpoD | — | — |
| Enterobacter sp. TBS_079 | 0.49 | MPMX20_02847 | | RNA polymerase sigma factor FliA | 0.47 | MPMX20_03909 | | RNA polymerase sigma factor RpoD | — | — |
| Enterobacter asburiae PDN3 | 0.49 | EX28DRAFT_0625 | | RNA polymerase sigma factor, FliA/WhiG family | 0.47 | EX28DRAFT_3102 | | RNA polymerase, sigma 70 subunit, RpoD | — | — |
| Dickeya dianthicola ME23 | 0.49 | DZA65_RS13835 | | RNA polymerase sigma factor FliA | 0.46 | DZA65_RS03105 | | RNA polymerase sigma factor RpoD | — | — |
| Dickeya dianthicola 67-19 | 0.49 | HGI48_RS13350 | | RNA polymerase sigma factor FliA | 0.46 | HGI48_RS03110 | | RNA polymerase sigma factor RpoD | — | — |
| Dickeya dadantii 3937 | 0.49 | DDA3937_RS13300 | | RNA polymerase sigma factor FliA | 0.46 | DDA3937_RS02945 | | RNA polymerase sigma factor RpoD | — | — |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS16865 | | RNA polymerase sigma factor FliA | 0.45 | ABIE51_RS02310 | | RNA polymerase sigma factor RpoD | — | — |
| Pseudomonas sp. S08-1 | 0.47 | OH686_02730 | | RNA polymerase sigma factor for flagellar operon | 0.46 | OH686_14970 | | RNA polymerase sigma factor RpoD | — | — |
| Pseudomonas stutzeri RCH2 | 0.47 | Psest_1740 | | RNA polymerase sigma factor, FliA/WhiG family | 0.47 | Psest_3682 | | RNA polymerase sigma factor, sigma-70 family | — | — |
| Pseudomonas fluorescens SBW25 | 0.46 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | 0.46 | PFLU_RS27535 | | RNA polymerase sigma factor RpoD | — | — |
| Pseudomonas simiae WCS417 | 0.46 | PS417_19695 | | flagellar biosynthesis sigma factor | 0.46 | PS417_25880 | | RNA polymerase subunit sigma-70 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.46 | PFLU_RS21660 | | RNA polymerase sigma factor FliA | 0.46 | PFLU_RS27535 | | RNA polymerase sigma factor RpoD | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.46 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.47 | Psyr_4641 | | RNA polymerase, sigma 70 subunit, RpoD | — | — |
| Pseudomonas putida KT2440 | 0.46 | PP_4341 | | RNA polymerase sigma 28 (sigma F) factor for class III flagellar operons | 0.46 | PP_0387 | | RNA polymerase, sigma 70 (sigma D) factor | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.46 | Psyr_3437 | | RNA polymerase, sigma 28 subunit, SigD/FliA/WhiG | 0.47 | Psyr_4641 | | RNA polymerase, sigma 70 subunit, RpoD | — | — |
| Marinobacter adhaerens HP15 | 0.46 | HP15_2302 | | flagellar biosynthesis sigma factor FliA | 0.47 | HP15_315 | | RNA polymerase, sigma 70 subunit, RpoD | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.46 | PfGW456L13_4331 | | RNA polymerase sigma factor for flagellar operon | 0.46 | PfGW456L13_1186 | | RNA polymerase sigma factor RpoD | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.46 | Pf6N2E2_2573 | | RNA polymerase sigma factor for flagellar operon | 0.46 | Pf6N2E2_4791 | | RNA polymerase sigma factor RpoD | — | — |
| Pseudomonas fluorescens FW300-N2C3 | 0.46 | AO356_03730 | | flagellar biosynthesis sigma factor | 0.46 | AO356_14265 | | RNA polymerase subunit sigma-70 | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.46 | Pf1N1B4_3626 | | RNA polymerase sigma factor for flagellar operon | 0.46 | Pf1N1B4_2513 | | RNA polymerase sigma factor RpoD | — | — |
| Shewanella sp. ANA-3 | 0.46 | Shewana3_1359 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.44 | Shewana3_3087 | | RNA polymerase, sigma 70 subunit, RpoD (RefSeq) | — | — |
| Pseudomonas fluorescens FW300-N2E3 | 0.46 | AO353_18785 | | flagellar biosynthesis sigma factor | 0.46 | AO353_07385 | | RNA polymerase subunit sigma-70 | — | — |
| Pseudomonas sp. RS175 | 0.45 | PFR28_00852 | | RNA polymerase sigma factor FliA | 0.46 | PFR28_04078 | | RNA polymerase sigma factor RpoD | — | — |
| Pectobacterium carotovorum WPP14 | 0.45 | HER17_RS08355 | | RNA polymerase sigma factor FliA | 0.46 | HER17_RS18415 | | RNA polymerase sigma factor RpoD | — | — |
| Shewanella oneidensis MR-1 | 0.45 | SO3210 | fliA | RNA polymerase sigma-27 factor (NCBI ptt file) | 0.44 | SO1284 | rpoD | RNA polymerase sigma-70 factor (NCBI ptt file) | — | — |
| Shewanella loihica PV-4 | 0.45 | Shew_1383 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.45 | Shew_0996 | | RpoD family RNA polymerase sigma factor (RefSeq) | — | — |
| Castellaniella sp019104865 MT123 | 0.45 | ABCV34_RS05605 | | RNA polymerase sigma factor FliA | 0.68 | ABCV34_RS02695 | | RNA polymerase sigma factor RpoD | — | — |
| Shewanella amazonensis SB2B | 0.45 | Sama_2280 | fliA | flagellar biosynthesis sigma factor (RefSeq) | 0.45 | Sama_0823 | | RNA polymerase sigma-70 factor (RefSeq) | — | — |
| Rhodanobacter sp. FW510-T8 | 0.44 | OKGIIK_02830 | fliA | RNA polymerase sigma factor FliA | 0.46 | OKGIIK_13865 | rpoD | RNA polymerase sigma factor RpoD | — | — |
| Dyella japonica UNC79MFTsu3.2 | 0.44 | ABZR86_RS20265 | | RNA polymerase sigma factor FliA | 0.47 | ABZR86_RS13945 | | RNA polymerase sigma factor RpoD | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.43 | LRK54_RS13580 | | RNA polymerase sigma factor FliA | 0.46 | LRK54_RS07325 | | RNA polymerase sigma factor RpoD | — | — |
| Alteromonas macleodii MIT1002 | 0.43 | MIT1002_01103 | | Sigma-F factor | 0.45 | MIT1002_00733 | | Sigma-70 | — | — |
| Rhodanobacter denitrificans MT42 | 0.43 | LRK55_RS13320 | | RNA polymerase sigma factor FliA | 0.46 | LRK55_RS07055 | | RNA polymerase sigma factor RpoD | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.42 | CSW01_10335 | | RNA polymerase sigma factor FliA | 0.46 | CSW01_02745 | | RNA polymerase sigma factor RpoD | — | — |
| Xanthomonas campestris pv. campestris strain 8004 | 0.41 | Xcc-8004.2832.1 | | RNA polymerase sigma factor for flagellar operon | 0.44 | Xcc-8004.4729.1 | | RNA polymerase sigma factor RpoD | — | — |
| Desulfovibrio vulgaris Hildenborough JW710 | 0.32 | DVU3229 | fliA | RNA polymerase sigma factor for flagellar operon FliA (TIGR) | 0.33 | DVU1788 | rpoD | RNA polymerase sigma-70 factor (TIGR) | — | — |
| Sphingomonas koreensis DSMZ 15582 | 0.24 | Ga0059261_2081 | | RNA polymerase sigma factor, FliA/WhiG family | 0.38 | Ga0059261_4238 | | RNA polymerase sigma factor RpoD, C-terminal domain | — | — |
Not shown: 3 genomes with orthologs for QEN71_RS28940 only; 17 genomes with orthologs for QEN71_RS15185 only