| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Paraburkholderia sabiae LMG 24235 | 1.0 | QEN71_RS00175 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 1.0 | QEN71_RS03005 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.62 | 9 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.82 | H281DRAFT_02237 | | 16S rRNA (cytosine967-C5)-methyltransferase | 0.95 | H281DRAFT_04082 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Burkholderia phytofirmans PsJN | 0.80 | BPHYT_RS01475 | | 16S rRNA methyltransferase | 0.95 | BPHYT_RS15710 | | ATP-dependent Clp protease ATP-binding protein | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.48 | RPSI07_RS23575 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.85 | RPSI07_RS12575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.47 | ABZR87_RS04950 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.86 | ABZR87_RS00435 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Ralstonia solanacearum UW163 | 0.46 | UW163_RS03790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.85 | UW163_RS08860 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.46 | RALBFv3_RS09790 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.85 | RALBFv3_RS04810 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Ralstonia solanacearum GMI1000 | 0.46 | RS_RS00375 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.86 | RS_RS12370 | | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS20450 | | 16S rRNA methyltransferase | 0.84 | RR42_RS17105 | | Clp protease ClpX | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.41 | HSERO_RS00355 | | methyltransferase | 0.84 | HSERO_RS07030 | | ATP-dependent Clp protease ATP-binding protein | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF1789 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.80 | GFF4521 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 90 |
| Variovorax sp. SCN45 | 0.35 | GFF5878 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) | 0.80 | GFF341 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 127 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS14225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.75 | ABCV34_RS05305 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
| Acidovorax sp. GW101-3H11 | 0.34 | Ac3H11_4461 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.79 | Ac3H11_2456 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 79 |
| Dechlorosoma suillum PS | 0.33 | Dsui_0812 | | ribosomal RNA small subunit methyltransferase RsmB | 0.77 | Dsui_0009 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 51 |
| Variovorax sp. OAS795 | 0.33 | ABID97_RS05360 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.80 | ABID97_RS16910 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 91 |
| Dickeya dianthicola 67-19 | 0.31 | HGI48_RS19225 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.61 | HGI48_RS09575 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 71 |
| Dickeya dianthicola ME23 | 0.31 | DZA65_RS20350 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.61 | DZA65_RS09885 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Dickeya dadantii 3937 | 0.31 | DDA3937_RS19135 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.61 | DDA3937_RS09560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Enterobacter sp. TBS_079 | 0.30 | MPMX20_04196 | | Ribosomal RNA small subunit methyltransferase B | 0.63 | MPMX20_01544 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 85 |
| Escherichia coli ECRC62 | 0.30 | BNILDI_02200 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | BNILDI_20435 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECOR27 | 0.30 | NOLOHH_09320 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | NOLOHH_22180 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 75 |
| Escherichia coli ECOR38 | 0.30 | HEPCGN_16350 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | HEPCGN_22900 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Escherichia coli BL21 | 0.30 | ECD_03139 | | 16S rRNA m(5)C967 methyltransferase, SAM-dependent | 0.62 | ECD_00887 | | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity | low | > 61 |
| Escherichia coli BW25113 | 0.30 | b3289 | rsmB | 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) | 0.62 | b0882 | clpA | ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) | 0.26 | 59 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.30 | OHPLBJKB_00415 | | Ribosomal RNA small subunit methyltransferase B | 0.62 | OHPLBJKB_02786 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Escherichia coli Nissle 1917 | 0.29 | ECOLIN_RS18875 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | ECOLIN_RS04695 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 55 |
| Escherichia fergusonii Becca | 0.29 | EFB2_00535 | | Ribosomal RNA small subunit methyltransferase B | 0.62 | EFB2_03179 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECRC102 | 0.29 | NIAGMN_15290 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | NIAGMN_03825 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC98 | 0.29 | JDDGAC_21150 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | JDDGAC_09420 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Escherichia coli ECRC100 | 0.29 | OKFHMN_17520 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | OKFHMN_05785 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Escherichia coli ECRC99 | 0.29 | KEDOAH_10620 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | KEDOAH_22125 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | — | — |
| Escherichia coli ECRC101 | 0.29 | MCAODC_08050 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | MCAODC_25000 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Erwinia tracheiphila SCR3 | 0.29 | LU632_RS22480 | rsmB | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.59 | LU632_RS09705 | clpA | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Pantoea sp. MT58 | 0.29 | IAI47_02280 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.61 | IAI47_12945 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 76 |
| Pectobacterium carotovorum WPP14 | 0.29 | HER17_RS02215 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | HER17_RS12400 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.63 | 67 |
| Rahnella sp. WP5 | 0.29 | EX31_RS15985 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.62 | EX31_RS18560 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 89 |
| Enterobacter asburiae PDN3 | 0.29 | EX28DRAFT_0039 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.62 | EX28DRAFT_2050 | | ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.29 | GFF2390 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 | 0.62 | GFF4901 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 78 |
| Marinobacter adhaerens HP15 | 0.28 | HP15_3742 | | Fmu, rRNA SAM-dependent methyltransferase | 0.63 | HP15_2080 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 73 |
| Klebsiella michiganensis M5al | 0.28 | BWI76_RS25680 | | 16S rRNA m5C967 methyltransferase | 0.62 | BWI76_RS09615 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 92 |
| Shewanella amazonensis SB2B | 0.27 | Sama_0041 | | sun protein (RefSeq) | 0.63 | Sama_2056 | | ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) | low | > 62 |
| Serratia liquefaciens MT49 | 0.27 | IAI46_23275 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.61 | IAI46_08515 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Alteromonas macleodii MIT1002 | 0.27 | MIT1002_00018 | | Ribosomal RNA small subunit methyltransferase B | 0.62 | MIT1002_01834 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 70 |
| Pseudomonas sp. S08-1 | 0.27 | OH686_12525 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase | 0.63 | OH686_00235 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 80 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.26 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.64 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.26 | Psyr_0017 | | 16S rRNA m(5)C-967 methyltransferase | 0.64 | Psyr_3183 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Pseudomonas stutzeri RCH2 | 0.26 | Psest_0021 | | ribosomal RNA small subunit methyltransferase RsmB | 0.64 | Psest_2027 | | ATP-dependent Clp protease ATP-binding subunit clpA | low | > 67 |
| Pseudomonas fluorescens FW300-N2E3 | 0.26 | AO353_10630 | | 16S rRNA methyltransferase | 0.63 | AO353_27675 | | ATP-dependent Clp protease ATP-binding subunit ClpA | 0.27 | 70 |
| Pseudomonas fluorescens FW300-N2E2 | 0.26 | Pf6N2E2_4121 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.63 | Pf6N2E2_292 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 103 |
| Pseudomonas simiae WCS417 | 0.25 | PS417_00085 | | 16S rRNA methyltransferase | 0.64 | PS417_16510 | | Clp protease ClpX | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.25 | Pf1N1B4_1914 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.63 | Pf1N1B4_4055 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas fluorescens SBW25 | 0.25 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.63 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.25 | PFLU_RS00080 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.63 | PFLU_RS18550 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.25 | AO356_11275 | | 16S rRNA methyltransferase | 0.63 | AO356_22150 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 104 |
| Pseudomonas putida KT2440 | 0.25 | PP_0066 | | Ribosomal RNA small subunit methyltransferase B | 0.63 | PP_4008 | | ATP-dependent serine protease | low | > 96 |
| Shewanella loihica PV-4 | 0.25 | Shew_3738 | | sun protein (RefSeq) | 0.62 | Shew_1566 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 60 |
| Shewanella sp. ANA-3 | 0.25 | Shewana3_0033 | | sun protein (RefSeq) | 0.62 | Shewana3_1753 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 73 |
| Pseudomonas fluorescens GW456-L13 | 0.25 | PfGW456L13_652 | | Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) | 0.63 | PfGW456L13_2646 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 87 |
| Pseudomonas sp. RS175 | 0.25 | PFR28_04663 | | Ribosomal RNA small subunit methyltransferase B | 0.64 | PFR28_02613 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 88 |
| Shewanella oneidensis MR-1 | 0.24 | SO0030 | sun | sun protein (NCBI ptt file) | 0.62 | SO2626 | clpA | ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) | low | > 76 |
| Lysobacter sp. OAE881 | 0.23 | ABIE51_RS02255 | | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | 0.64 | ABIE51_RS11490 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 62 |
| Acinetobacter radioresistens SK82 | 0.23 | MPMX26_03021 | | Ribosomal RNA small subunit methyltransferase B | 0.57 | MPMX26_01284 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 36 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.20 | Xcc-8004.4741.1 | | hypothetical protein | 0.62 | Xcc-8004.2754.1 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 74 |
| Caulobacter crescentus NA1000 Δfur | 0.18 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | 0.59 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 67 |
| Caulobacter crescentus NA1000 | 0.18 | CCNA_00101 | | 16S rRNA m5C methyltransferase RsmB | 0.59 | CCNA_02553 | | ATP-dependent clp protease ATP-binding subunit ClpA | low | > 66 |
| Rhodopseudomonas palustris CGA009 | 0.17 | TX73_000155 | | transcription antitermination factor NusB | 0.59 | TX73_016270 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 86 |
| Azospirillum sp. SherDot2 | 0.16 | MPMX19_02327 | | Ribosomal RNA small subunit methyltransferase B | 0.59 | MPMX19_00503 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 112 |
| Dinoroseobacter shibae DFL-12 | 0.16 | Dshi_3033 | | Fmu (Sun) domain protein (RefSeq) | 0.59 | Dshi_2939 | | ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) | low | > 64 |
| Azospirillum brasilense Sp245 | 0.16 | AZOBR_RS00235 | | MFS transporter | 0.60 | AZOBR_RS05175 | | ATP-dependent Clp protease ATP-binding protein | low | > 97 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.13 | A4249_RS13165 | | RsmB/NOP family class I SAM-dependent RNA methyltransferase | 0.58 | A4249_RS08390 | | ATP-dependent Clp protease ATP-binding subunit ClpA | low | > 48 |
Not shown: 1 genomes with orthologs for QEN71_RS00175 only; 18 genomes with orthologs for QEN71_RS03005 only