Conservation of cofitness between QEN71_RS02745 and QEN71_RS01750 in Paraburkholderia sabiae LMG 24235

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Paraburkholderia sabiae LMG 24235 1.0 QEN71_RS02745 tRNA epoxyqueuosine(34) reductase QueG 1.0 QEN71_RS01750 ribosome-associated translation inhibitor RaiA 0.54 11
Paraburkholderia graminis OAS925 0.76 ABIE53_003363 epoxyqueuosine reductase 0.91 ABIE53_000717 putative sigma-54 modulation protein 0.32 113
Paraburkholderia bryophila 376MFSha3.1 0.75 H281DRAFT_04128 epoxyqueuosine reductase 0.91 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Burkholderia phytofirmans PsJN 0.75 BPHYT_RS15960 iron-sulfur cluster binding protein 0.90 BPHYT_RS02900 ribosome hibernation promoting factor low > 109
Ralstonia solanacearum UW163 0.54 UW163_RS08505 tRNA epoxyqueuosine(34) reductase QueG 0.70 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS05120 tRNA epoxyqueuosine(34) reductase QueG 0.70 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Ralstonia solanacearum PSI07 0.54 RPSI07_RS12175 tRNA epoxyqueuosine(34) reductase QueG 0.69 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Ralstonia solanacearum GMI1000 0.54 RS_RS12740 tRNA epoxyqueuosine(34) reductase QueG 0.71 RS_RS02015 ribosomal subunit interface protein low > 80
Cupriavidus basilensis FW507-4G11 0.53 RR42_RS03405 epoxyqueuosine reductase 0.70 RR42_RS02080 ribosome hibernation promoting factor low > 128
Ralstonia sp. UNC404CL21Col 0.53 ABZR87_RS00775 tRNA epoxyqueuosine(34) reductase QueG 0.71 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA low > 80
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF5474 Epoxyqueuosine (oQ) reductase QueG 0.60 GFF2612 Ribosome hibernation protein YhbH low > 90
Acidovorax sp. GW101-3H11 0.50 Ac3H11_306 Epoxyqueuosine (oQ) reductase QueG 0.65 Ac3H11_681 Ribosome hibernation protein YhbH low > 79
Variovorax sp. OAS795 0.48 ABID97_RS20285 tRNA epoxyqueuosine(34) reductase QueG 0.63 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Pseudomonas sp. S08-1 0.48 OH686_09500 epoxyqueuosine reductase 0.39 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Pseudomonas syringae pv. syringae B728a 0.48 Psyr_0566 4Fe-4S cluster binding protein 0.36 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.48 Psyr_0566 4Fe-4S cluster binding protein 0.36 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Castellaniella sp019104865 MT123 0.48 ABCV34_RS13905 tRNA epoxyqueuosine(34) reductase QueG 0.48 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA low > 48
Pseudomonas fluorescens SBW25-INTG 0.47 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.34 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25 0.47 PFLU_RS02540 tRNA epoxyqueuosine(34) reductase QueG 0.34 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas simiae WCS417 0.47 PS417_02460 epoxyqueuosine reductase 0.36 PS417_04340 ribosome hibernation promoting factor HPF low > 88
Dyella japonica UNC79MFTsu3.2 0.47 ABZR86_RS00835 tRNA epoxyqueuosine(34) reductase QueG 0.26 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Pseudomonas fluorescens FW300-N2E3 0.47 AO353_13115 epoxyqueuosine reductase 0.35 AO353_05185 hypothetical protein low > 101
Pseudomonas fluorescens FW300-N1B4 0.47 Pf1N1B4_1418 Epoxyqueuosine (oQ) reductase QueG 0.36 Pf1N1B4_1081 Ribosome hibernation protein YhbH low > 87
Pseudomonas sp. RS175 0.47 PFR28_05115 Epoxyqueuosine reductase 0.35 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas fluorescens GW456-L13 0.47 PfGW456L13_160 Epoxyqueuosine (oQ) reductase QueG 0.36 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Rhodanobacter sp. FW510-T8 0.46 OKGIIK_03900 queG tRNA epoxyqueuosine(34) reductase QueG 0.28 OKGIIK_02260 raiA ribosomal subunit interface protein low > 52
Pseudomonas fluorescens FW300-N2C3 0.46 AO356_08685 epoxyqueuosine reductase 0.36 AO356_07040 hypothetical protein low > 104
Pseudomonas fluorescens FW300-N2E2 0.46 Pf6N2E2_3620 Epoxyqueuosine (oQ) reductase QueG 0.36 Pf6N2E2_3268 Ribosome hibernation protein YhbH low > 103
Pseudomonas stutzeri RCH2 0.46 Psest_0677 iron-sulfur cluster binding protein, putative 0.39 Psest_3314 ribosomal subunit interface protein low > 67
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS15130 tRNA epoxyqueuosine(34) reductase QueG 0.27 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Marinobacter adhaerens HP15 0.45 HP15_2505 iron-sulfur cluster binding protein 0.37 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Variovorax sp. SCN45 0.45 GFF4805 Epoxyqueuosine reductase (EC 1.17.99.6) QueG 0.63 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Rhodanobacter denitrificans MT42 0.45 LRK55_RS14845 tRNA epoxyqueuosine(34) reductase QueG 0.27 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Lysobacter sp. OAE881 0.44 ABIE51_RS08045 tRNA epoxyqueuosine(34) reductase QueG 0.28 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Escherichia coli BW25113 0.44 b4166 yjeS predicted Fe-S electron transport protein (NCBI) 0.30 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) low > 76
Escherichia coli ECRC62 0.44 BNILDI_06940 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 BNILDI_01800 Ribosome hibernation promoting factor low > 75
Escherichia coli ECOR27 0.44 NOLOHH_04550 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 NOLOHH_09735 Ribosome hibernation promoting factor low > 75
Pseudomonas putida KT2440 0.44 PP_4900 epoxyqueuosine reductase 0.34 PP_0951 Ribosome hibernation promoting factor low > 96
Klebsiella michiganensis M5al 0.44 BWI76_RS02505 tRNA epoxyqueuosine(34) reductase QueG 0.33 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Escherichia coli BL21 0.44 ECD_04033 epoxyqueuosine reductase, cobalamine-stimulated; queosine biosynthesis 0.30 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 61
Escherichia coli HS(pFamp)R (ATCC 700891) 0.44 OHPLBJKB_03876 Epoxyqueuosine reductase 0.30 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECRC98 0.43 JDDGAC_15925 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 JDDGAC_21560 Ribosome hibernation promoting factor low > 86
Escherichia coli ECRC99 0.43 KEDOAH_15870 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli ECOR38 0.43 HEPCGN_10515 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 HEPCGN_16810 Ribosome hibernation promoting factor low > 87
Escherichia coli ECRC100 0.43 OKFHMN_12285 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 OKFHMN_17935 Ribosome hibernation promoting factor low > 80
Escherichia coli ECRC102 0.43 NIAGMN_10135 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli Nissle 1917 0.43 ECOLIN_RS24200 tRNA epoxyqueuosine(34) reductase QueG 0.30 ECOLIN_RS18430 ribosome hibernation promoting factor low > 55
Escherichia coli ECRC101 0.43 MCAODC_02800 queG tRNA epoxyqueuosine(34) reductase QueG 0.30 MCAODC_08455 Ribosome hibernation promoting factor low > 87
Alteromonas macleodii MIT1002 0.43 MIT1002_03794 Epoxyqueuosine reductase 0.41 MIT1002_00826 Ribosome hibernation promoting factor 0.57 54
Escherichia fergusonii Becca 0.43 EFB2_04369 Epoxyqueuosine reductase 0.30 EFB2_00620 Ribosome hibernation promoting factor low > 86
Dechlorosoma suillum PS 0.43 Dsui_3502 iron-sulfur cluster binding protein, putative 0.48 Dsui_0703 ribosomal subunit interface protein low > 51
Enterobacter asburiae PDN3 0.43 EX28DRAFT_3363 epoxyqueuosine reductase 0.27 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.43 GFF819 Epoxyqueuosine (oQ) reductase QueG 0.32 GFF2947 Ribosome hibernation protein YhbH low > 78
Enterobacter sp. TBS_079 0.43 MPMX20_00447 Epoxyqueuosine reductase 0.28 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Serratia liquefaciens MT49 0.43 IAI46_01595 tRNA epoxyqueuosine(34) reductase QueG 0.34 IAI46_22475 ribosome hibernation promoting factor low > 86
Dickeya dadantii 3937 0.43 DDA3937_RS18645 tRNA epoxyqueuosine(34) reductase QueG 0.31 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Vibrio cholerae E7946 ATCC 55056 0.43 CSW01_01810 tRNA epoxyqueuosine(34) reductase QueG 0.31 CSW01_12820 ribosome hibernation promoting factor low > 62
Dickeya dianthicola 67-19 0.42 HGI48_RS18575 tRNA epoxyqueuosine(34) reductase QueG 0.32 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.2252.1 Epoxyqueuosine (oQ) reductase QueG 0.31 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Dickeya dianthicola ME23 0.42 DZA65_RS19710 tRNA epoxyqueuosine(34) reductase QueG 0.32 DZA65_RS01505 ribosome hibernation promoting factor 0.34 18
Pectobacterium carotovorum WPP14 0.42 HER17_RS02555 tRNA epoxyqueuosine(34) reductase QueG 0.34 HER17_RS20065 ribosome hibernation promoting factor low > 75
Shewanella oneidensis MR-1 0.42 SO3861 iron-sulfur cluster-binding protein (NCBI ptt file) 0.38 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.41 Shewana3_0745 putative iron-sulfur cluster binding protein (RefSeq) 0.38 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) low > 73
Pantoea sp. MT58 0.41 IAI47_02560 tRNA epoxyqueuosine(34) reductase QueG 0.30 IAI47_17190 ribosome hibernation promoting factor low > 76
Shewanella loihica PV-4 0.41 Shew_2979 putative iron-sulfur cluster binding protein (RefSeq) 0.41 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) low > 60
Rahnella sp. WP5 0.41 EX31_RS08850 tRNA epoxyqueuosine(34) reductase QueG 0.34 EX31_RS12395 ribosome hibernation promoting factor low > 89
Shewanella amazonensis SB2B 0.39 Sama_2625 iron-sulfur cluster-binding protein (RefSeq) 0.38 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Acinetobacter radioresistens SK82 0.37 MPMX26_01783 Epoxyqueuosine reductase 0.28 MPMX26_02591 Ribosome hibernation promoting factor — —
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_0486 iron-sulfur cluster binding protein, putative 0.38 B158DRAFT_2079 ribosomal subunit interface protein 0.31 24

Not shown: 11 genomes with orthologs for QEN71_RS02745 only; 4 genomes with orthologs for QEN71_RS01750 only