| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 1.0 | Psyr_4739 | | tRNA (guanine-N(7)-)-methyltransferase | 0.48 | 15 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_0726 | | ribosomal large subunit pseudouridine synthase D | 1.00 | Psyr_4739 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 86 |
| Pseudomonas fluorescens FW300-N2E3 | 0.97 | AO353_14220 | | ribosomal large subunit pseudouridine synthase D | 0.84 | AO353_08210 | | tRNA (guanine-N7)-methyltransferase | low | > 101 |
| Pseudomonas fluorescens SBW25 | 0.96 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | PFLU_RS28415 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 109 |
| Pseudomonas fluorescens FW300-N2C3 | 0.96 | AO356_15925 | | ribosomal large subunit pseudouridine synthase D | 0.84 | AO356_13380 | | tRNA (guanine-N7)-methyltransferase | low | > 104 |
| Pseudomonas fluorescens SBW25-INTG | 0.96 | PFLU_RS03870 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.82 | PFLU_RS28415 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 109 |
| Pseudomonas simiae WCS417 | 0.96 | PS417_03820 | | ribosomal large subunit pseudouridine synthase D | 0.83 | PS417_26770 | | tRNA (guanine-N7)-methyltransferase | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.93 | Pf1N1B4_2822 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.84 | Pf1N1B4_2332 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.92 | Pf6N2E2_5127 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.84 | Pf6N2E2_4591 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.92 | PfGW456L13_1493 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.83 | PfGW456L13_1001 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | — | — |
| Pseudomonas sp. RS175 | 0.92 | PFR28_03748 | | Ribosomal large subunit pseudouridine synthase D | 0.85 | PFR28_04251 | | tRNA (guanine-N(7)-)-methyltransferase | 0.29 | 50 |
| Pseudomonas putida KT2440 | 0.86 | PP_0623 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.85 | PP_5103 | | tRNA (guanine-N(7)-)-methyltransferase | — | — |
| Pseudomonas stutzeri RCH2 | 0.86 | Psest_0709 | | pseudouridine synthase, RluA family | 0.76 | Psest_0268 | | tRNA (guanine-N(7)-)-methyltransferase | 0.31 | 6 |
| Pseudomonas sp. S08-1 | 0.83 | OH686_16410 | | LSU rRNA pseudouridine(1911/1915/1917) synthase | 0.74 | OH686_14290 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 80 |
| Marinobacter adhaerens HP15 | 0.60 | HP15_527 | | pseudouridine synthase, RluA family | 0.55 | HP15_278 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 73 |
| Dickeya dianthicola ME23 | 0.58 | DZA65_RS17330 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | DZA65_RS05250 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Dickeya dianthicola 67-19 | 0.58 | HGI48_RS16235 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | HGI48_RS04915 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 71 |
| Dickeya dadantii 3937 | 0.58 | DDA3937_RS16110 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.57 | DDA3937_RS04905 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 74 |
| Erwinia tracheiphila SCR3 | 0.57 | LU632_RS16945 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.56 | LU632_RS05425 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 74 |
| Rahnella sp. WP5 | 0.57 | EX31_RS07570 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.55 | EX31_RS02730 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 89 |
| Pectobacterium carotovorum WPP14 | 0.56 | HER17_RS05400 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.56 | HER17_RS16620 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Shewanella sp. ANA-3 | 0.56 | Shewana3_3171 | | ribosomal large subunit pseudouridine synthase D (RefSeq) | 0.58 | Shewana3_1182 | trmB | tRNA (guanine-N(7)-)-methyltransferase (RefSeq) | low | > 73 |
| Serratia liquefaciens MT49 | 0.56 | IAI46_03985 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.56 | IAI46_21460 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 86 |
| Shewanella amazonensis SB2B | 0.55 | Sama_2605 | | pseudouridylate synthase (RefSeq) | 0.59 | Sama_2489 | trmB | tRNA (guanine-N(7)-)-methyltransferase (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.55 | Shew_2950 | | RluA family pseudouridine synthase (RefSeq) | 0.59 | Shew_1124 | trmB | tRNA (guanine-N(7))-methyltransferase (RefSeq) | low | > 60 |
| Vibrio cholerae E7946 ATCC 55056 | 0.55 | CSW01_03695 | | ribosomal large subunit pseudouridine synthase D | 0.54 | CSW01_02415 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 62 |
| Escherichia coli ECOR38 | 0.55 | HEPCGN_20375 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | HEPCGN_18475 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 87 |
| Escherichia fergusonii Becca | 0.55 | EFB2_01296 | | Ribosomal large subunit pseudouridine synthase D | 0.58 | EFB2_00942 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 86 |
| Escherichia coli ECRC98 | 0.55 | JDDGAC_24915 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | JDDGAC_22835 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 86 |
| Escherichia coli ECRC100 | 0.55 | OKFHMN_21250 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | OKFHMN_19205 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 80 |
| Escherichia coli Nissle 1917 | 0.55 | ECOLIN_RS14675 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | ECOLIN_RS16465 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.77 | 38 |
| Escherichia coli ECRC102 | 0.55 | NIAGMN_19020 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | NIAGMN_16970 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | — | — |
| Escherichia coli ECRC101 | 0.55 | MCAODC_11780 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | MCAODC_09725 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.68 | 15 |
| Escherichia coli ECRC99 | 0.55 | KEDOAH_06970 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | KEDOAH_08935 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | — | — |
| Pantoea sp. MT58 | 0.55 | IAI47_04425 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.56 | IAI47_03565 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 76 |
| Escherichia coli BW25113 | 0.55 | b2594 | rluD | 23S rRNA pseudouridine synthase (NCBI) | 0.58 | b2960 | yggH | tRNA(m7G46)-methyltransferase (NCBI) | — | — |
| Escherichia coli BL21 | 0.55 | ECD_02484 | | 23S rRNA pseudouridine(1911,1915,1917) synthase | 0.58 | ECD_02790 | | tRNA m(7)G46 methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli ECRC62 | 0.55 | BNILDI_11730 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | BNILDI_09650 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.55 | OHPLBJKB_01112 | | Ribosomal large subunit pseudouridine synthase D | 0.58 | OHPLBJKB_00756 | | tRNA (guanine-N(7)-)-methyltransferase | 0.43 | 60 |
| Escherichia coli ECOR27 | 0.55 | NOLOHH_12925 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.58 | NOLOHH_11065 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 75 |
| Alteromonas macleodii MIT1002 | 0.55 | MIT1002_02679 | | Ribosomal large subunit pseudouridine synthase D | 0.58 | MIT1002_00237 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 70 |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_2532 | | Pseudouridylate synthases, 23S RNA-specific | 0.54 | B158DRAFT_0203 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 40 |
| Enterobacter sp. TBS_079 | 0.54 | MPMX20_03463 | | Ribosomal large subunit pseudouridine synthase D | 0.60 | MPMX20_03817 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.54 | EX28DRAFT_2695 | | pseudouridine synthase, RluA family | 0.60 | EX28DRAFT_2997 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 76 |
| Klebsiella michiganensis M5al | 0.53 | BWI76_RS21450 | | 23S rRNA pseudouridine(1911/1915/1917) synthase | 0.59 | BWI76_RS24150 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 92 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.53 | GFF4182 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.58 | GFF3064 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | 0.82 | 74 |
| Lysobacter sp. OAE881 | 0.51 | ABIE51_RS04885 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | ABIE51_RS16550 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 62 |
| Rhodanobacter denitrificans MT42 | 0.49 | LRK55_RS04745 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.48 | LRK55_RS11710 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS04965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.48 | LRK54_RS11985 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.49 | ABZR86_RS10965 | | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.46 | ABZR86_RS11650 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.42 | 30 |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_01790 | rluD | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | 0.49 | OKGIIK_11900 | trmB | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 52 |
| Acinetobacter radioresistens SK82 | 0.45 | MPMX26_00735 | | Ribosomal large subunit pseudouridine synthase D | 0.38 | MPMX26_01105 | | tRNA (guanine-N(7)-)-methyltransferase | 0.76 | 17 |
| Ralstonia sp. UNC404CL21Col | 0.44 | ABZR87_RS13315 | | RluA family pseudouridine synthase | 0.45 | ABZR87_RS08805 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.71 | 13 |
| Ralstonia solanacearum PSI07 | 0.43 | RPSI07_RS15970 | | RluA family pseudouridine synthase | 0.45 | RPSI07_RS20505 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 81 |
| Ralstonia solanacearum GMI1000 | 0.43 | RS_RS08205 | | RluA family pseudouridine synthase | 0.45 | RS_RS03535 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 80 |
| Ralstonia solanacearum IBSBF1503 | 0.42 | RALBFv3_RS01520 | | RluA family pseudouridine synthase | 0.45 | RALBFv3_RS12755 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 76 |
| Ralstonia solanacearum UW163 | 0.42 | UW163_RS14830 | | RluA family pseudouridine synthase | 0.45 | UW163_RS00810 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | — | — |
| Herbaspirillum seropedicae SmR1 | 0.39 | HSERO_RS15070 | | ribosomal large subunit pseudouridine synthase D | 0.45 | HSERO_RS02470 | | tRNA (guanine-N7)-methyltransferase | low | > 78 |
| Rhizobium sp. OAE497 | 0.38 | ABIE40_RS14790 | | RluA family pseudouridine synthase | 0.18 | ABIE40_RS01670 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 107 |
| Azospirillum sp. SherDot2 | 0.36 | MPMX19_05442 | | Ribosomal large subunit pseudouridine synthase D | 0.17 | MPMX19_02518 | | tRNA (guanine-N(7)-)-methyltransferase | low | > 112 |
| Sphingomonas koreensis DSMZ 15582 | 0.36 | Ga0059261_0664 | | pseudouridine synthase, RluA family | 0.25 | Ga0059261_1620 | | Predicted S-adenosylmethionine-dependent methyltransferase | low | > 68 |
| Castellaniella sp019104865 MT123 | 0.35 | ABCV34_RS01885 | | RluA family pseudouridine synthase | 0.42 | ABCV34_RS08995 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 48 |
| Sinorhizobium meliloti 1021 | 0.34 | SMc00647 | | ribosomal large subunit pseudouridine synthase | 0.18 | SMc01108 | | tRNA (guanine-N(7)-)-methyltransferase | 0.58 | 91 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.34 | GFF4870 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.44 | GFF5184 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | low | > 90 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.24 | CCNA_00047 | | tRNA m7-G46 methyltransferase | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_00485 | | ribosomal large subunit pseudouridine synthase D | 0.24 | CCNA_00047 | | tRNA m7-G46 methyltransferase | low | > 67 |
| Agrobacterium fabrum C58 | 0.33 | Atu2443 | | ribosomal large subunit pseudouridine synthase, RluD subfamily | 0.19 | Atu0363 | | putative tRNA (guanine-N(7)-)-methyltransferase | — | — |
| Rhodospirillum rubrum S1H | 0.32 | Rru_A1111 | | Pseudouridine synthase, RluD (NCBI) | 0.20 | Rru_A3777 | | hypothetical protein (NCBI) | low | > 58 |
| Variovorax sp. SCN45 | 0.30 | GFF988 | | LSU rRNA pseudouridine(1911/1915/1917) synthase (EC 5.4.99.23) | 0.47 | GFF593 | | tRNA (guanine(46)-N(7))-methyltransferase (EC 2.1.1.33) | low | > 127 |
| Acidovorax sp. GW101-3H11 | 0.30 | Ac3H11_1787 | | Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70) | 0.43 | Ac3H11_4163 | | tRNA (guanine46-N7-)-methyltransferase (EC 2.1.1.33) | low | > 79 |
| Variovorax sp. OAS795 | 0.28 | ABID97_RS14190 | | RluA family pseudouridine synthase | 0.46 | ABID97_RS18030 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | 0.37 | 21 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.27 | A4249_RS10060 | | RluA family pseudouridine synthase | 0.24 | A4249_RS13980 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 48 |
| Mycobacterium tuberculosis H37Rv | 0.23 | Rv1540 | | Conserved hypothetical protein member of yabO/yceC/yfiI family | 0.27 | Rv0208c | | Hypothetical methlytransferase (methylase) | — | — |
| Bifidobacterium breve UCC2003 | 0.19 | BBR_RS17135 | | RluA family pseudouridine synthase | 0.22 | BBR_RS18245 | | tRNA (guanosine(46)-N7)-methyltransferase TrmB | low | > 34 |
Not shown: 20 genomes with orthologs for Psyr_0726 only; 7 genomes with orthologs for Psyr_4739 only