| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas syringae pv. syringae B728a | 1.0 | Psyr_3177 | | Recombination protein MgsA | 1.0 | Psyr_1767 | | NADPH-dependent FMN reductase | 0.31 | 11 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 1.00 | Psyr_3177 | | Recombination protein MgsA | 1.00 | Psyr_1767 | | NADPH-dependent FMN reductase | low | > 86 |
| Pseudomonas fluorescens FW300-N2C3 | 0.92 | AO356_22185 | | recombination factor protein RarA | 0.70 | AO356_24510 | | ACP phosphodiesterase | low | > 104 |
| Pseudomonas sp. RS175 | 0.92 | PFR28_02606 | | Replication-associated recombination protein A | 0.69 | PFR28_01559 | | Quinone reductase | low | > 88 |
| Pseudomonas fluorescens FW300-N1B4 | 0.92 | Pf1N1B4_4062 | | FIG065221: Holliday junction DNA helicase | 0.74 | Pf1N1B4_4604 | | FMN reductase, NADPH-dependent | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.92 | Pf6N2E2_299 | | FIG065221: Holliday junction DNA helicase | 0.69 | Pf6N2E2_594 | | FMN reductase, NADPH-dependent | low | > 103 |
| Pseudomonas putida KT2440 | 0.91 | PP_4002 | | DNA-dependent ATPase required for recombination | 0.72 | PP_4138 | | Chromate reductase | low | > 96 |
| Pseudomonas fluorescens FW300-N2E3 | 0.90 | AO353_27640 | | recombination factor protein RarA | 0.70 | AO353_23580 | | ACP phosphodiesterase | low | > 101 |
| Pseudomonas fluorescens SBW25-INTG | 0.90 | PFLU_RS18520 | | replication-associated recombination protein A | 0.74 | PFLU_RS12955 | | NAD(P)H-dependent oxidoreductase | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.90 | PFLU_RS18520 | | replication-associated recombination protein A | 0.74 | PFLU_RS12955 | | NAD(P)H-dependent oxidoreductase | low | > 109 |
| Pseudomonas fluorescens GW456-L13 | 0.90 | PfGW456L13_2653 | | FIG065221: Holliday junction DNA helicase | 0.76 | PfGW456L13_3332 | | FMN reductase, NADPH-dependent | low | > 87 |
| Pseudomonas simiae WCS417 | 0.90 | PS417_16480 | | recombination factor protein RarA | 0.74 | PS417_12265 | | ACP phosphodiesterase | low | > 88 |
| Pseudomonas sp. S08-1 | 0.89 | OH686_00270 | | Replication-associated recombination protein RarA | 0.69 | OH686_14895 | | Chromate reductase | low | > 80 |
| Klebsiella michiganensis M5al | 0.60 | BWI76_RS09670 | | recombination factor protein RarA | 0.31 | BWI76_RS00105 | | NAD(P)H-dependent oxidoreductase | low | > 92 |
| Enterobacter sp. TBS_079 | 0.59 | MPMX20_01554 | | Replication-associated recombination protein A | 0.32 | MPMX20_04646 | | Quinone reductase | low | > 85 |
| Enterobacter asburiae PDN3 | 0.59 | EX28DRAFT_2040 | | ATPase related to the helicase subunit of the Holliday junction resolvase | 0.33 | EX28DRAFT_3997 | | Predicted flavoprotein | low | > 76 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.59 | GFF4896 | | FIG065221: Holliday junction DNA helicase | 0.31 | GFF1741 | | FIG00553873: hypothetical protein | low | > 78 |
| Rahnella sp. WP5 | 0.59 | EX31_RS18515 | | replication-associated recombination protein A | 0.30 | EX31_RS06025 | | NAD(P)H-dependent oxidoreductase | low | > 89 |
| Dickeya dianthicola ME23 | 0.59 | DZA65_RS09930 | | replication-associated recombination protein A | 0.21 | DZA65_RS14735 | | NAD(P)H-dependent oxidoreductase | low | > 75 |
| Dickeya dianthicola 67-19 | 0.59 | HGI48_RS09620 | | replication-associated recombination protein A | 0.21 | HGI48_RS14075 | | NAD(P)H-dependent oxidoreductase | low | > 71 |
| Dickeya dadantii 3937 | 0.59 | DDA3937_RS09605 | | replication-associated recombination protein A | 0.21 | DDA3937_RS14075 | | NAD(P)H-dependent oxidoreductase | low | > 74 |
| Cupriavidus basilensis FW507-4G11 | 0.58 | RR42_RS04355 | | recombination factor protein RarA | 0.60 | RR42_RS12790 | | ACP phosphodiesterase | low | > 128 |
| Escherichia coli ECRC98 | 0.58 | JDDGAC_09370 | rarA | replication-associated recombination protein RarA | 0.31 | JDDGAC_18560 | yieF | class I chromate reductase YieF | low | > 86 |
| Escherichia coli Nissle 1917 | 0.58 | ECOLIN_RS04745 | | replication-associated recombination protein RarA | 0.31 | ECOLIN_RS21380 | | class I chromate reductase YieF | low | > 55 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.58 | OHPLBJKB_02776 | | Replication-associated recombination protein A | 0.31 | OHPLBJKB_04340 | | Quinone reductase | low | > 73 |
| Escherichia coli ECOR27 | 0.58 | NOLOHH_22130 | rarA | replication-associated recombination protein RarA | 0.31 | NOLOHH_07090 | yieF | class I chromate reductase YieF | low | > 75 |
| Escherichia coli ECRC99 | 0.58 | KEDOAH_22175 | rarA | replication-associated recombination protein RarA | 0.31 | KEDOAH_13210 | yieF | class I chromate reductase YieF | — | — |
| Escherichia coli ECOR38 | 0.58 | HEPCGN_22950 | rarA | replication-associated recombination protein RarA | 0.31 | HEPCGN_13645 | yieF | class I chromate reductase YieF | low | > 87 |
| Escherichia coli BL21 | 0.58 | ECD_00896 | | recombination intermediate processing DNA-dependent ATPase | 0.31 | ECD_03597 | | chromate reductase, Class I, flavoprotein | low | > 61 |
| Escherichia fergusonii Becca | 0.58 | EFB2_03169 | | Replication-associated recombination protein A | 0.31 | EFB2_04919 | | Quinone reductase | low | > 86 |
| Escherichia coli ECRC101 | 0.58 | MCAODC_24950 | rarA | replication-associated recombination protein RarA | 0.31 | MCAODC_05450 | yieF | class I chromate reductase YieF | low | > 87 |
| Escherichia coli ECRC100 | 0.58 | OKFHMN_05560 | rarA | replication-associated recombination protein RarA | 0.31 | OKFHMN_14940 | yieF | class I chromate reductase YieF | low | > 80 |
| Escherichia coli BW25113 | 0.58 | b0892 | ycaJ | recombination protein (NCBI) | 0.31 | b3713 | yieF | chromate reductase, Class I, flavoprotein (NCBI) | low | > 76 |
| Escherichia coli ECRC102 | 0.58 | NIAGMN_03280 | rarA | replication-associated recombination protein RarA | 0.31 | NIAGMN_12695 | yieF | class I chromate reductase YieF | — | — |
| Escherichia coli ECRC62 | 0.58 | BNILDI_20385 | rarA | replication-associated recombination protein RarA | 0.31 | BNILDI_04440 | yieF | class I chromate reductase YieF | low | > 75 |
| Serratia liquefaciens MT49 | 0.58 | IAI46_08570 | | replication-associated recombination protein A | 0.30 | IAI46_25230 | | NAD(P)H-dependent oxidoreductase | low | > 86 |
| Paraburkholderia graminis OAS925 | 0.58 | ABIE53_001292 | | putative ATPase | 0.45 | ABIE53_004655 | | chromate reductase | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.57 | QEN71_RS03415 | | replication-associated recombination protein A | 0.49 | QEN71_RS16475 | | NADPH-dependent FMN reductase | low | > 153 |
| Ralstonia sp. UNC404CL21Col | 0.57 | ABZR87_RS16030 | | replication-associated recombination protein A | 0.43 | ABZR87_RS17870 | | NADPH-dependent FMN reductase | low | > 80 |
| Burkholderia phytofirmans PsJN | 0.57 | BPHYT_RS05100 | | ATPase AAA | 0.46 | BPHYT_RS34750 | | NADPH-dependent FMN reductase | low | > 109 |
| Ralstonia solanacearum PSI07 | 0.57 | RPSI07_RS13205 | | replication-associated recombination protein A | 0.42 | RPSI07_RS06655 | | NAD(P)H-dependent oxidoreductase | low | > 81 |
| Ralstonia solanacearum IBSBF1503 | 0.57 | RALBFv3_RS04145 | | replication-associated recombination protein A | 0.42 | RALBFv3_RS16810 | | NAD(P)H-dependent oxidoreductase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.57 | UW163_RS09525 | | replication-associated recombination protein A | 0.42 | UW163_RS18165 | | NAD(P)H-dependent oxidoreductase | — | — |
| Ralstonia solanacearum GMI1000 | 0.56 | RS_RS11735 | | replication-associated recombination protein A | 0.42 | RS_RS24320 | | NAD(P)H-dependent oxidoreductase | low | > 80 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.56 | H281DRAFT_00180 | | Recombination protein MgsA | 0.46 | H281DRAFT_03602 | | NAD(P)H-dependent FMN reductase | 0.23 | 77 |
| Dechlorosoma suillum PS | 0.56 | Dsui_1694 | | AAA ATPase | 0.33 | Dsui_2815 | | putative flavoprotein | 0.60 | 14 |
| Castellaniella sp019104865 MT123 | 0.56 | ABCV34_RS07220 | | replication-associated recombination protein A | 0.53 | ABCV34_RS07250 | | NAD(P)H-dependent oxidoreductase | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.54 | Xcc-8004.2744.1 | | FIG065221: Holliday junction DNA helicase | 0.44 | Xcc-8004.3486.1 | | FIG00553873: hypothetical protein | low | > 74 |
| Alteromonas macleodii MIT1002 | 0.54 | MIT1002_02178 | | Replication-associated recombination protein A | 0.18 | MIT1002_01194 | | FMN-dependent NADPH-azoreductase | low | > 70 |
| Variovorax sp. SCN45 | 0.54 | GFF6034 | | Replication-associated recombination protein RarA | 0.42 | GFF1282 | | Chromate reductase (EC 1.6.5.2) | low | > 127 |
| Variovorax sp. OAS795 | 0.53 | ABID97_RS07835 | | replication-associated recombination protein A | 0.41 | ABID97_RS15545 | | NAD(P)H-dependent oxidoreductase | low | > 91 |
| Acidovorax sp. GW101-3H11 | 0.53 | Ac3H11_1696 | | FIG065221: Holliday junction DNA helicase | 0.25 | Ac3H11_4961 | | NADPH:quinone oxidoreductase | low | > 79 |
| Rhodanobacter sp. FW510-T8 | 0.53 | OKGIIK_07580 | rarA | recombination factor protein RarA | 0.38 | OKGIIK_14860 | ssuE | ACP phosphodiesterase | low | > 52 |
| Rhodanobacter denitrificans FW104-10B01 | 0.53 | LRK54_RS17320 | | replication-associated recombination protein A | 0.38 | LRK54_RS08035 | | NAD(P)H-dependent oxidoreductase | low | > 59 |
| Dyella japonica UNC79MFTsu3.2 | 0.53 | ABZR86_RS01825 | | replication-associated recombination protein A | 0.47 | ABZR86_RS07505 | | NAD(P)H-dependent oxidoreductase | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.52 | LRK55_RS17545 | | replication-associated recombination protein A | 0.38 | LRK55_RS07785 | | NADPH-dependent FMN reductase | low | > 63 |
| Lysobacter sp. OAE881 | 0.52 | ABIE51_RS11445 | | replication-associated recombination protein A | 0.45 | ABIE51_RS11315 | | NADPH-dependent FMN reductase | low | > 62 |
| Sinorhizobium meliloti 1021 | 0.48 | SMc01279 | | recombination factor protein RarA | 0.25 | SMc01960 | | oxidoreductase | low | > 103 |
| Phaeobacter inhibens DSM 17395 | 0.47 | PGA1_c01930 | | replication-associated recombination protein A | 0.21 | PGA1_c28990 | | putative NADPH-dependent FMN reductase | low | > 62 |
| Rhodopseudomonas palustris CGA009 | 0.47 | TX73_016655 | | replication-associated recombination protein A | 0.58 | TX73_014865 | | NAD(P)H-dependent oxidoreductase | low | > 86 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.47 | A4249_RS07890 | | replication-associated recombination protein A | 0.58 | A4249_RS00155 | | NAD(P)H-dependent oxidoreductase | low | > 48 |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.46 | GFF777 | | FIG065221: Holliday junction DNA helicase | 0.47 | GFF1359 | | NADPH:quinone oxidoreductase | low | > 90 |
| Rhodospirillum rubrum S1H | 0.46 | Rru_A2660 | | AAA ATPase, central region (NCBI) | 0.35 | Rru_A3083 | | NADPH-dependent FMN reductase (NCBI) | low | > 58 |
| Dinoroseobacter shibae DFL-12 | 0.46 | Dshi_0313 | | AAA ATPase central domain protein (RefSeq) | 0.16 | Dshi_0154 | | NADPH-dependent FMN reductase (RefSeq) | — | — |
| Bosea sp. OAE506 | 0.45 | ABIE41_RS14690 | | replication-associated recombination protein A | 0.38 | ABIE41_RS11875 | | NADPH-dependent FMN reductase | low | > 77 |
| Caulobacter crescentus NA1000 | 0.44 | CCNA_01342 | | ATPase, AAA family | 0.22 | CCNA_01605 | | NADPH-dependent FMN reductase family protein | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.44 | CCNA_01342 | | ATPase, AAA family | 0.22 | CCNA_01605 | | NADPH-dependent FMN reductase family protein | low | > 67 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.42 | CA265_RS22400 | | AAA family ATPase | 0.25 | CA265_RS12800 | | NAD(P)H-dependent oxidoreductase | low | > 88 |
| Desulfovibrio vulgaris Miyazaki F | 0.32 | DvMF_0339 | | recombination factor protein RarA (RefSeq) | 0.59 | DvMF_0156 | | NADPH-dependent FMN reductase (RefSeq) | low | > 51 |
Not shown: 31 genomes with orthologs for Psyr_3177 only; 0 genomes with orthologs for Psyr_1767 only