Conservation of cofitness between Psyr_0003 and Psyr_1650 in Pseudomonas syringae pv. syringae B728a

84 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas syringae pv. syringae B728a 1.0 Psyr_0003 DNA replication and repair protein RecF 1.0 Psyr_1650 aminodeoxychorismate lyase apoprotein 0.37 12
Pseudomonas syringae pv. syringae B728a ΔmexB 1.00 Psyr_0003 DNA replication and repair protein RecF 1.00 Psyr_1650 aminodeoxychorismate lyase apoprotein low > 86
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_10480 recombinase RecF 0.74 AO353_01350 4-amino-4-deoxychorismate lyase low > 101
Pseudomonas fluorescens SBW25 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.72 PFLU_RS23040 aminodeoxychorismate lyase low > 109
Pseudomonas fluorescens SBW25-INTG 0.93 PFLU_RS00015 DNA replication/repair protein RecF 0.72 PFLU_RS23040 aminodeoxychorismate lyase low > 109
Pseudomonas fluorescens FW300-N1B4 0.93 Pf1N1B4_1927 DNA recombination and repair protein RecF 0.72 Pf1N1B4_448 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 87
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_11635 recombinase RecF 0.68 AO356_20180 4-amino-4-deoxychorismate lyase low > 104
Pseudomonas sp. DMC3 0.93 GFF578 DNA replication and repair protein RecF 0.68 GFF4754 Aminodeoxychorismate lyase low > 89
Pseudomonas orientalis W4I3 0.93 QF045_RS02960 DNA replication/repair protein RecF 0.73 QF045_RS23505 aminodeoxychorismate lyase low > 93
Pseudomonas lactucae CFBP13502 0.93 GEMAOFIL_00183 DNA replication and repair protein RecF 0.71 GEMAOFIL_04429 Aminodeoxychorismate lyase low > 96
Pseudomonas sp. SVBP6 0.93 COO64_RS02120 recF DNA replication/repair protein RecF 0.74 COO64_RS05790 pabC aminodeoxychorismate lyase low > 93
Pseudomonas sp. RS175 0.93 PFR28_04593 DNA replication and repair protein RecF 0.68 PFR28_03007 Aminodeoxychorismate lyase low > 88
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_4197 DNA recombination and repair protein RecF 0.64 Pf6N2E2_5955 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 103
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_664 DNA recombination and repair protein RecF 0.73 PfGW456L13_2108 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 87
Pseudomonas sp. BP01 0.91 JOY50_RS08340 recF DNA replication/repair protein RecF 0.67 JOY50_RS16775 pabC aminodeoxychorismate lyase low > 84
Pseudomonas simiae WCS417 0.90 PS417_00015 recombinase RecF 0.71 PS417_21425 4-amino-4-deoxychorismate lyase low > 88
Pseudomonas putida KT2440 0.89 PP_0012 DNA replication and repair protein 0.70 PP_1917 4-amino-4-deoxychorismate lyase low > 96
Pseudomonas segetis P6 0.87 MPMX49_00255 DNA replication and repair protein RecF 0.66 MPMX49_02083 Aminodeoxychorismate lyase low > 75
Pseudomonas sp. S08-1 0.85 OH686_12620 DNA recombination and repair protein RecF 0.64 OH686_22155 aminodeoxychorismate lyase low > 80
Pseudomonas aeruginosa PA14 0.82 IKLFDK_25545 DNA replication/repair protein RecF 0.63 IKLFDK_15080 aminodeoxychorismate lyase — —
Pseudomonas stutzeri RCH2 0.77 Psest_0004 recF protein 0.59 Psest_1691 aminodeoxychorismate lyase low > 67
Shewanella oneidensis MR-1 0.42 SO0010 recF DNA replication and repair protein RecF (NCBI ptt file) 0.30 SO2615 pabC 4-amino-4-deoxychorismate lyase (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.42 Shewana3_0011 recF recombination protein F (RefSeq) 0.30 Shewana3_1764 aminodeoxychorismate lyase apoprotein (RefSeq) — —
Shewanella amazonensis SB2B 0.40 Sama_0015 recF recombination protein F (RefSeq) 0.24 Sama_2045 aminodeoxychorismate lyase (RefSeq) low > 62
Shewanella loihica PV-4 0.39 Shew_0003 DNA replication and repair protein RecF (RefSeq) 0.29 Shew_1577 aminotransferase, class IV (RefSeq) low > 60
Pectobacterium carotovorum WPP14 0.39 HER17_RS00015 DNA replication/repair protein RecF 0.29 HER17_RS08665 aminodeoxychorismate lyase low > 75
Serratia liquefaciens MT49 0.39 IAI46_00015 DNA replication/repair protein RecF 0.27 IAI46_09805 aminodeoxychorismate lyase low > 87
Dickeya dadantii 3937 0.38 DDA3937_RS21285 DNA replication/repair protein RecF 0.25 DDA3937_RS23255 aminodeoxychorismate lyase low > 74
Rahnella sp. WP5 0.38 EX31_RS05975 DNA replication/repair protein RecF 0.27 EX31_RS24450 aminodeoxychorismate lyase low > 89
Dickeya dianthicola ME23 0.38 DZA65_RS00015 DNA replication/repair protein RecF 0.26 DZA65_RS13640 aminodeoxychorismate lyase low > 75
Dickeya dianthicola 67-19 0.38 HGI48_RS00015 DNA replication/repair protein RecF 0.27 HGI48_RS13170 aminodeoxychorismate lyase low > 71
Escherichia coli ECOR27 0.38 NOLOHH_07165 recF DNA replication/repair protein RecF 0.25 NOLOHH_21090 pabC aminodeoxychorismate lyase low > 76
Escherichia coli BL21 0.38 ECD_03583 gap repair protein 0.25 ECD_01092 4-amino-4-deoxychorismate lyase component of para-aminobenzoate synthase multienzyme complex — —
Escherichia coli ECRC98 0.38 JDDGAC_18645 recF DNA replication/repair protein RecF 0.25 JDDGAC_07220 pabC aminodeoxychorismate lyase low > 87
Escherichia coli BW25113 0.38 b3700 recF recombination protein F (NCBI) 0.26 b1096 pabC 4-amino-4-deoxychorismate lyase (NCBI) low > 76
Escherichia coli ECRC62 0.38 BNILDI_04365 recF DNA replication/repair protein RecF 0.25 BNILDI_19250 pabC aminodeoxychorismate lyase low > 75
Escherichia coli Nissle 1917 0.38 ECOLIN_RS21310 DNA replication/repair protein RecF 0.25 ECOLIN_RS06330 aminodeoxychorismate lyase low > 55
Escherichia coli ECRC101 0.38 MCAODC_05535 recF DNA replication/repair protein RecF 0.25 MCAODC_22920 pabC aminodeoxychorismate lyase low > 87
Escherichia coli HS(pFamp)R (ATCC 700891) 0.38 OHPLBJKB_00003 DNA replication and repair protein RecF 0.25 OHPLBJKB_02570 Aminodeoxychorismate lyase low > 74
Escherichia coli ECRC99 0.38 KEDOAH_13125 recF DNA replication/repair protein RecF 0.25 KEDOAH_24195 pabC aminodeoxychorismate lyase — —
Escherichia fergusonii Becca 0.38 EFB2_00003 DNA replication and repair protein RecF 0.25 EFB2_02879 Aminodeoxychorismate lyase low > 86
Escherichia coli ECOR38 0.38 HEPCGN_13720 recF DNA replication/repair protein RecF 0.25 HEPCGN_23920 pabC aminodeoxychorismate lyase low > 88
Escherichia coli ECRC102 0.38 NIAGMN_12780 recF DNA replication/repair protein RecF 0.25 NIAGMN_24270 pabC aminodeoxychorismate lyase — —
Escherichia coli ECRC100 0.38 OKFHMN_15025 recF DNA replication/repair protein RecF 0.25 OKFHMN_03560 pabC aminodeoxychorismate lyase low > 79
Vibrio cholerae E7946 ATCC 55056 0.37 CSW01_00065 DNA replication and repair protein RecF 0.25 CSW01_10080 4-amino-4-deoxychorismate lyase low > 62
Enterobacter asburiae PDN3 0.37 EX28DRAFT_3987 DNA replication and repair protein RecF 0.28 EX28DRAFT_1833 aminodeoxychorismate lyase low > 76
Klebsiella pneumoniae MKP103 0.37 KDGMDA_08670 DNA replication/repair protein RecF 0.27 KDGMDA_18710 aminodeoxychorismate lyase low > 95
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF1756 DNA recombination and repair protein RecF 0.27 GFF3378 Aminodeoxychorismate lyase (EC 4.1.3.38) low > 78
Enterobacter sp. TBS_079 0.37 MPMX20_00003 DNA replication and repair protein RecF 0.24 MPMX20_01776 Aminodeoxychorismate lyase low > 85
Klebsiella michiganensis M5al 0.37 BWI76_RS00010 DNA replication and repair protein RecF 0.27 BWI76_RS11105 aminodeoxychorismate lyase low > 92
Pantoea sp. MT58 0.37 IAI47_00015 DNA replication/repair protein RecF 0.29 IAI47_12055 aminodeoxychorismate lyase low > 76
Marinobacter adhaerens HP15 0.36 HP15_3705 DNA replication and repair protein recF 0.25 HP15_2209 4-amino-4-deoxychorismate lyase low > 73
Erwinia tracheiphila SCR3 0.36 LU632_RS00015 recF DNA replication/repair protein RecF 0.26 LU632_RS14805 pabC aminodeoxychorismate lyase low > 73
Erwinia amylovora T8 0.36 OLJFJH_05150 DNA replication/repair protein RecF 0.28 OLJFJH_15515 aminodeoxychorismate lyase low > 58
Erwinia tracheiphila HP pepo 2.2 0.36 IJEDHG_09800 recF DNA replication/repair protein RecF 0.26 IJEDHG_00665 pabC aminodeoxychorismate lyase low > 61
Pantoea agglomerans CFBP13505 P0401 0.36 PagCFBP13505_RS19305 DNA replication/repair protein RecF 0.29 PagCFBP13505_RS05280 aminodeoxychorismate lyase low > 74
Alteromonas macleodii MIT1002 0.35 MIT1002_00003 DNA replication and repair protein RecF 0.24 MIT1002_01736 Aminodeoxychorismate lyase 0.42 33
Kangiella aquimarina DSM 16071 0.32 B158DRAFT_0366 DNA replication and repair protein RecF 0.21 B158DRAFT_1750 aminodeoxychorismate lyase low > 40
Acinetobacter radioresistens SK82 0.30 MPMX26_00003 DNA replication and repair protein RecF 0.20 MPMX26_02165 Aminodeoxychorismate lyase low > 36
Acinetobacter baumannii LAC-4 0.30 RR41_RS00015 DNA replication/repair protein RecF 0.24 RR41_RS04800 aminodeoxychorismate lyase low > 55
Rhodanobacter denitrificans FW104-10B01 0.28 LRK54_RS08475 DNA replication/repair protein RecF 0.36 LRK54_RS01165 aminodeoxychorismate lyase low > 59
Rhodanobacter denitrificans MT42 0.28 LRK55_RS08240 DNA replication/repair protein RecF 0.35 LRK55_RS00940 aminodeoxychorismate lyase low > 63
Rhodanobacter sp. FW510-T8 0.27 OKGIIK_15255 recF DNA replication/repair protein RecF 0.35 OKGIIK_05735 pabC aminodeoxychorismate lyase low > 53
Rhodanobacter sp000427505 FW510-R12 0.27 LRK53_RS00015 DNA replication/repair protein RecF 0.37 LRK53_RS08905 aminodeoxychorismate lyase low > 59
Dyella japonica UNC79MFTsu3.2 0.26 ABZR86_RS15145 DNA replication/repair protein RecF 0.37 ABZR86_RS06150 aminodeoxychorismate lyase low > 74
Lysobacter sp. OAE881 0.25 ABIE51_RS00765 DNA replication/repair protein RecF 0.31 ABIE51_RS13925 aminodeoxychorismate lyase low > 62
Echinicola vietnamensis KMM 6221, DSM 17526 0.17 Echvi_1156 recF protein 0.11 Echvi_2832 Branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase low > 79
Fusobacterium nucleatum SB010 0.17 HUW76_00025 DNA replication/repair protein RecF 0.15 HUW76_10200 aminotransferase class IV — —
Pedobacter sp. GW460-11-11-14-LB5 0.17 CA265_RS24760 DNA replication and repair protein RecF 0.11 CA265_RS14410 4-amino-4-deoxychorismate lyase low > 88
Rhizobium sp. OAE497 0.16 ABIE40_RS00200 DNA replication/repair protein RecF 0.14 ABIE40_RS09105 D-amino-acid transaminase low > 107
Agrobacterium fabrum C58 0.16 Atu0073 recF-like protein 0.10 Atu2511 D-alanine aminotransferase low > 89
Cellulophaga baltica 18 0.15 M666_RS11055 DNA replication and repair protein RecF 0.13 M666_RS13365 aminotransferase class IV low > 67
Azospirillum sp. SherDot2 0.15 MPMX19_02716 DNA replication and repair protein RecF 0.21 MPMX19_04995 D-alanine aminotransferase — —
Bosea sp. OAE506 0.15 ABIE41_RS04170 DNA replication/repair protein RecF 0.13 ABIE41_RS21735 D-amino-acid transaminase low > 77
Mucilaginibacter yixingensis YX-36 DSM 26809 0.15 ABZR88_RS21650 DNA replication/repair protein RecF 0.12 ABZR88_RS03990 aminotransferase class IV 0.63 24
Sinorhizobium meliloti 1021 0.15 SMc02863 recombination protein F 0.14 SMc01047 D-amino acid aminotransferase low > 103
Azospirillum brasilense Sp245 0.13 AZOBR_RS17670 recombinase RecF 0.17 AZOBR_RS23800 2-keto-4-methylthiobutyrate aminotransferase low > 97
Rhodopseudomonas palustris CGA009 0.12 TX73_000015 DNA replication/repair protein RecF 0.13 TX73_013435 D-amino-acid transaminase low > 86
Xanthobacter sp. DMC5 0.12 GFF3876 DNA replication and repair protein RecF 0.18 GFF438 D-alanine aminotransferase — —
Dinoroseobacter shibae DFL-12 0.11 Dshi_3375 SMC domain protein (RefSeq) 0.13 Dshi_4206 aminotransferase class IV (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.11 PGA1_c00030 DNA replication and repair protein RecF 0.11 PGA1_c34960 putative branched-chain-amino-acid aminotransferase, subunit A low > 62
Caulobacter crescentus NA1000 0.11 CCNA_00158 DNA replication and repair protein recF 0.17 CCNA_03047 4-amino-4-deoxychorismate lyase low > 66
Caulobacter crescentus NA1000 Δfur 0.11 CCNA_00158 DNA replication and repair protein recF 0.17 CCNA_03047 4-amino-4-deoxychorismate lyase low > 67
Rhodospirillum rubrum S1H 0.10 Rru_A0003 RecF protein (NCBI) 0.16 Rru_A1131 Aminotransferase, class IV (NCBI) — —
Brevundimonas sp. GW460-12-10-14-LB2 0.10 A4249_RS15360 DNA replication/repair protein RecF 0.11 A4249_RS04825 D-amino-acid transaminase low > 48

Not shown: 15 genomes with orthologs for Psyr_0003 only; 16 genomes with orthologs for Psyr_1650 only