Conservation of cofitness between PP_4697 and PP_5084 in Pseudomonas putida KT2440

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_4697 poly(A) polymerase 1.0 PP_5084 penicillin-insensitive transglycosylase/penicillin-sensitive transpeptidase 0.24 6
Pseudomonas fluorescens FW300-N2E2 0.82 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.80 Pf6N2E2_3761 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 103
Pseudomonas fluorescens FW300-N2C3 0.82 AO356_16070 poly(A) polymerase 0.84 AO356_09420 peptidase low > 104
Pseudomonas simiae WCS417 0.82 PS417_23900 poly(A) polymerase 0.82 PS417_01955 peptidase low > 88
Pseudomonas fluorescens SBW25 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.82 PFLU_RS02000 penicillin-binding protein 1A 0.56 32
Pseudomonas fluorescens SBW25-INTG 0.82 PFLU_RS25740 polynucleotide adenylyltransferase PcnB 0.82 PFLU_RS02000 penicillin-binding protein 1A low > 109
Pseudomonas fluorescens GW456-L13 0.82 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) 0.79 PfGW456L13_282 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 87
Pseudomonas sp. RS175 0.82 PFR28_03719 Poly(A) polymerase I 0.83 PFR28_05006 Penicillin-binding protein 1A low > 88
Pseudomonas fluorescens FW300-N2E3 0.82 AO353_14395 poly(A) polymerase 0.84 AO353_12470 peptidase low > 101
Pseudomonas syringae pv. syringae B728a 0.81 Psyr_0830 Poly(A) polymerase 0.82 Psyr_0402 Peptidoglycan glycosyltransferase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.81 Psyr_0830 Poly(A) polymerase 0.82 Psyr_0402 Peptidoglycan glycosyltransferase low > 86
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) 0.83 Pf1N1B4_1544 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.42 15
Pseudomonas sp. S08-1 0.71 OH686_17255 Poly(A) polymerase 0.76 OH686_10055 Multimodular transpeptidase-transglycosylase low > 80
Pseudomonas stutzeri RCH2 0.70 Psest_0998 poly(A) polymerase 0.72 Psest_3720 penicillin-binding protein, 1A family low > 67
Marinobacter adhaerens HP15 0.46 HP15_326 polyA polymerase 0.47 HP15_473 penicillin-binding protein, 1A family — —
Vibrio cholerae E7946 ATCC 55056 0.44 CSW01_03145 polynucleotide adenylyltransferase PcnB 0.38 CSW01_13335 penicillin-binding protein 1A — —
Alteromonas macleodii MIT1002 0.44 MIT1002_03692 Poly(A) polymerase I precursor 0.38 MIT1002_00454 Penicillin-binding protein 1A low > 70
Shewanella sp. ANA-3 0.43 Shewana3_3406 poly(A) polymerase (RefSeq) 0.40 Shewana3_3900 1A family penicillin-binding protein (RefSeq) — —
Kangiella aquimarina DSM 16071 0.43 B158DRAFT_0058 poly(A) polymerase 0.41 B158DRAFT_0757 penicillin-binding protein, 1A family — —
Paraburkholderia sabiae LMG 24235 0.43 QEN71_RS26465 polynucleotide adenylyltransferase PcnB 0.36 QEN71_RS28065 penicillin-binding protein 1A low > 153
Serratia liquefaciens MT49 0.43 IAI46_21220 polynucleotide adenylyltransferase PcnB 0.38 IAI46_23740 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 86
Shewanella amazonensis SB2B 0.43 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) 0.40 Sama_3374 penicillin-binding protein 1A (RefSeq) low > 62
Paraburkholderia graminis OAS925 0.43 ABIE53_000870 poly(A) polymerase 0.35 ABIE53_003746 penicillin-binding protein 1A low > 113
Shewanella oneidensis MR-1 0.43 SO0872 pcnB polyA polymerase (NCBI ptt file) 0.41 SO0280 mrcA penicillin-binding protein 1A (NCBI ptt file) — —
Shewanella loihica PV-4 0.42 Shew_3131 poly(A) polymerase (RefSeq) 0.39 Shew_0207 1A family penicillin-binding protein (RefSeq) — —
Paraburkholderia bryophila 376MFSha3.1 0.42 H281DRAFT_04706 poly(A) polymerase 0.36 H281DRAFT_05609 penicillin-binding protein 1A low > 103
Burkholderia phytofirmans PsJN 0.42 BPHYT_RS03620 poly(A) polymerase 0.36 BPHYT_RS11390 penicillin-binding protein 1A low > 109
Xanthomonas campestris pv. campestris strain 8004 0.42 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) 0.39 Xcc-8004.1196.1 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 74
Lysobacter sp. OAE881 0.42 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB 0.39 ABIE51_RS17190 penicillin-binding protein 1A low > 62
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS17235 poly(A) polymerase 0.34 RR42_RS19040 penicillin-binding protein — —
Enterobacter sp. TBS_079 0.42 MPMX20_00829 Poly(A) polymerase I 0.38 MPMX20_04284 Penicillin-binding protein 1A low > 85
Dickeya dadantii 3937 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB 0.38 DDA3937_RS19580 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 74
Enterobacter asburiae PDN3 0.42 EX28DRAFT_3732 poly(A) polymerase 0.38 EX28DRAFT_4146 penicillin-binding protein, 1A family low > 76
Dickeya dianthicola ME23 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB 0.37 DZA65_RS20795 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 75
Klebsiella michiganensis M5al 0.41 BWI76_RS05005 polynucleotide adenylyltransferase 0.38 BWI76_RS26125 carboxypeptidase/penicillin-binding protein 1A low > 92
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.41 GFF89 Poly(A) polymerase (EC 2.7.7.19) 0.38 GFF623 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) low > 78
Ralstonia solanacearum IBSBF1503 0.41 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB 0.33 RALBFv3_RS06970 penicillin-binding protein 1A — —
Dickeya dianthicola 67-19 0.41 HGI48_RS16060 polynucleotide adenylyltransferase PcnB 0.37 HGI48_RS19710 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA 0.76 14
Pantoea sp. MT58 0.41 IAI47_15645 polynucleotide adenylyltransferase PcnB 0.38 IAI47_01860 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 76
Escherichia coli ECRC102 0.41 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB 0.37 NIAGMN_14850 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECRC62 0.41 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB 0.37 BNILDI_02650 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECRC99 0.41 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB 0.37 KEDOAH_11060 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli BW25113 0.41 b0143 pcnB poly(A) polymerase I (VIMSS) 0.37 b3396 mrcA peptidoglycan synthetase; penicillin-binding protein 1A (VIMSS) low > 76
Escherichia coli ECOR38 0.41 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB 0.37 HEPCGN_15900 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 85
Escherichia coli Nissle 1917 0.41 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB 0.37 ECOLIN_RS19395 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA 0.74 34
Escherichia coli ECRC101 0.41 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB 0.37 OKFHMN_17080 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Escherichia coli ECOR27 0.41 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB 0.37 NOLOHH_08870 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 57
Escherichia coli ECRC98 0.41 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB 0.37 JDDGAC_20710 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Rhodanobacter denitrificans FW104-10B01 0.41 LRK54_RS15105 polynucleotide adenylyltransferase PcnB 0.41 LRK54_RS11830 penicillin-binding protein 1A 0.44 24
Escherichia coli HS(pFamp)R (ATCC 700891) 0.41 OHPLBJKB_03519 Poly(A) polymerase I 0.37 OHPLBJKB_00307 Penicillin-binding protein 1A low > 73
Rhodanobacter denitrificans MT42 0.41 LRK55_RS14820 polynucleotide adenylyltransferase PcnB 0.41 LRK55_RS11555 penicillin-binding protein 1A low > 63
Escherichia coli BL21 0.41 ECD_00142 poly(A) polymerase 0.37 ECD_03248 penicillin-binding protein 1a, murein transglycosylase and transpeptidase low > 60
Escherichia fergusonii Becca 0.41 EFB2_03901 Poly(A) polymerase I 0.37 EFB2_00432 Penicillin-binding protein 1A low > 86
Rhodanobacter sp. FW510-T8 0.41 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase 0.42 OKGIIK_12065 Penicillin-binding protein 1A low > 52
Escherichia coli ECRC101 0.41 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB 0.37 MCAODC_07610 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Ralstonia solanacearum GMI1000 0.41 RS_RS13165 polynucleotide adenylyltransferase PcnB 0.33 RS_RS14915 penicillin-binding protein 1A — —
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB 0.34 ABZR87_RS02625 penicillin-binding protein 1A — —
Ralstonia solanacearum PSI07 0.41 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB 0.33 RPSI07_RS10265 penicillin-binding protein 1A — —
Dyella japonica UNC79MFTsu3.2 0.40 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB 0.43 ABZR86_RS11815 penicillin-binding protein 1A low > 74
Pectobacterium carotovorum WPP14 0.40 HER17_RS05570 polynucleotide adenylyltransferase PcnB 0.38 HER17_RS01745 peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA low > 75
Castellaniella sp019104865 MT123 0.40 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB 0.31 ABCV34_RS12695 PBP1A family penicillin-binding protein — —
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS03145 poly(A) polymerase 0.33 HSERO_RS20890 penicillin-binding protein 1A — —
Dechlorosoma suillum PS 0.40 Dsui_1515 poly(A) polymerase 0.37 Dsui_1186 penicillin-binding protein, 1A family — —
Erwinia tracheiphila SCR3 0.39 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB 0.38 LU632_RS22900 mrcA peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.36 GFF3438 Poly(A) polymerase (EC 2.7.7.19) 0.33 GFF1338 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) 0.63 20
Acidovorax sp. GW101-3H11 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) 0.33 Ac3H11_4700 Multimodular transpeptidase-transglycosylase (EC 2.4.1.129) (EC 3.4.-.-) — —
Acinetobacter radioresistens SK82 0.34 MPMX26_00543 Poly(A) polymerase I 0.41 MPMX26_02817 Penicillin-binding protein 1A low > 36

Not shown: 0 genomes with orthologs for PP_4697 only; 31 genomes with orthologs for PP_5084 only