| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pseudomonas putida KT2440 | 1.0 | PP_4098 | | UvrABC system protein C | 1.0 | PP_4693 | | RNA polymerase-binding transcription factor DksA | 0.26 | 7 |
| Pseudomonas fluorescens FW300-N2C3 | 0.87 | AO356_00350 | | excinuclease ABC subunit C | 0.77 | AO356_16095 | | molecular chaperone DnaK | low | > 104 |
| Pseudomonas simiae WCS417 | 0.87 | PS417_10725 | | excinuclease ABC subunit C | 0.78 | PS417_23875 | | molecular chaperone DnaK | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.87 | PFLU_RS10770 | | excinuclease ABC subunit UvrC | 0.77 | PFLU_RS25715 | | RNA polymerase-binding protein DksA | low | > 109 |
| Pseudomonas syringae pv. syringae B728a | 0.86 | Psyr_2896 | | Excinuclease ABC subunit C | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.86 | Psyr_2896 | | Excinuclease ABC subunit C | 0.76 | Psyr_0835 | | transcriptional regulator, TraR/DksA family | 0.35 | 37 |
| Pseudomonas fluorescens FW300-N1B4 | 0.86 | Pf1N1B4_5618 | | Excinuclease ABC subunit C | 0.76 | Pf1N1B4_2862 | | C4-type zinc finger protein, DksA/TraR family | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.86 | PfGW456L13_2886 | | Excinuclease ABC subunit C | 0.78 | PfGW456L13_1528 | | C4-type zinc finger protein, DksA/TraR family | low | > 87 |
| Pseudomonas fluorescens FW300-N2E3 | 0.86 | AO353_21835 | | excinuclease ABC subunit C | 0.76 | AO353_14420 | | molecular chaperone DnaK | low | > 101 |
| Pseudomonas sp. RS175 | 0.84 | PFR28_01411 | | UvrABC system protein C | 0.77 | PFR28_03714 | | RNA polymerase-binding transcription factor DksA | low | > 88 |
| Pseudomonas stutzeri RCH2 | 0.84 | Psest_2259 | | excinuclease ABC, C subunit | 0.69 | Psest_1003 | | RNA polymerase-binding protein DksA | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.84 | Pf6N2E2_2021 | | Excinuclease ABC subunit C | 0.68 | Pf6N2E2_5160 | | C4-type zinc finger protein, DksA/TraR family | low | > 103 |
| Pseudomonas sp. S08-1 | 0.82 | OH686_00340 | | excinuclease ABC subunit C | 0.71 | OH686_17280 | | RNA polymerase-binding protein DksA | — | — |
| Marinobacter adhaerens HP15 | 0.56 | HP15_1568 | | excinuclease ABC subunit C | 0.60 | HP15_332 | | transcriptional regulator, TraR/DksA family | — | — |
| Escherichia coli BL21 | 0.52 | ECD_01878 | | excinuclease UvrABC, endonuclease subunit | 0.64 | ECD_00144 | | transcriptional regulator of rRNA transcription; DnaK suppressor protein | — | — |
| Escherichia coli BW25113 | 0.52 | b1913 | uvrC | excinuclease ABC, subunit C; repair of UV damage to DNA (VIMSS) | 0.64 | b0145 | dksA | DNA-binding transcriptional regulator of rRNA transcription, DnaK suppressor protein (NCBI) | low | > 76 |
| Escherichia fergusonii Becca | 0.52 | EFB2_02033 | | UvrABC system protein C | 0.64 | EFB2_03899 | | RNA polymerase-binding transcription factor DksA | low | > 86 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.52 | OHPLBJKB_01816 | | UvrABC system protein C | 0.64 | OHPLBJKB_03517 | | RNA polymerase-binding transcription factor DksA | low | > 73 |
| Escherichia coli Nissle 1917 | 0.52 | ECOLIN_RS10895 | | excinuclease ABC subunit UvrC | 0.64 | ECOLIN_RS00815 | | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC62 | 0.52 | BNILDI_15235 | uvrC | excinuclease ABC subunit UvrC | 0.64 | BNILDI_08980 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC101 | 0.52 | MCAODC_19565 | uvrC | excinuclease ABC subunit UvrC | 0.64 | MCAODC_00860 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC98 | 0.52 | JDDGAC_00415 | uvrC | excinuclease ABC subunit UvrC | 0.64 | JDDGAC_13940 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECOR38 | 0.52 | HEPCGN_04180 | uvrC | excinuclease ABC subunit UvrC | 0.64 | HEPCGN_08295 | dksA | RNA polymerase-binding protein DksA | low | > 85 |
| Klebsiella michiganensis M5al | 0.52 | BWI76_RS18330 | | excinuclease ABC subunit C | 0.64 | BWI76_RS05015 | | transcriptional regulator | low | > 92 |
| Escherichia coli ECRC102 | 0.52 | NIAGMN_02225 | uvrC | excinuclease ABC subunit UvrC | 0.64 | NIAGMN_08195 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC101 | 0.52 | OKFHMN_25825 | uvrC | excinuclease ABC subunit UvrC | 0.64 | OKFHMN_10345 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECRC99 | 0.52 | KEDOAH_02265 | uvrC | excinuclease ABC subunit UvrC | 0.64 | KEDOAH_17810 | dksA | RNA polymerase-binding protein DksA | — | — |
| Escherichia coli ECOR27 | 0.52 | NOLOHH_16445 | uvrC | excinuclease ABC subunit UvrC | 0.64 | NOLOHH_02690 | dksA | RNA polymerase-binding protein DksA | — | — |
| Serratia liquefaciens MT49 | 0.52 | IAI46_09210 | | excinuclease ABC subunit UvrC | 0.65 | IAI46_21210 | | RNA polymerase-binding protein DksA | low | > 86 |
| Pantoea sp. MT58 | 0.51 | IAI47_12465 | | excinuclease ABC subunit UvrC | 0.63 | IAI47_15635 | | RNA polymerase-binding protein DksA | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.51 | CSW01_06140 | | excinuclease ABC subunit C | 0.64 | CSW01_03155 | | RNA polymerase-binding transcription factor DksA | low | > 62 |
| Erwinia tracheiphila SCR3 | 0.51 | LU632_RS10195 | uvrC | excinuclease ABC subunit UvrC | 0.64 | LU632_RS20080 | dksA | RNA polymerase-binding protein DksA | — | — |
| Shewanella sp. ANA-3 | 0.51 | Shewana3_1609 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.60 | Shewana3_3404 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 73 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.51 | GFF1700 | | Excinuclease ABC subunit C | 0.64 | GFF87 | | C4-type zinc finger protein, DksA/TraR family | low | > 78 |
| Shewanella oneidensis MR-1 | 0.51 | SO1861 | uvrC | excinuclease ABC, C subunit (NCBI ptt file) | 0.60 | SO0874 | dksA | DnaK suppressor protein (NCBI ptt file) | — | — |
| Dickeya dianthicola ME23 | 0.51 | DZA65_RS14285 | | excinuclease ABC subunit UvrC | 0.64 | DZA65_RS17135 | | RNA polymerase-binding protein DksA | — | — |
| Dickeya dianthicola 67-19 | 0.51 | HGI48_RS13795 | | excinuclease ABC subunit UvrC | 0.64 | HGI48_RS16050 | | RNA polymerase-binding protein DksA | low | > 71 |
| Dickeya dadantii 3937 | 0.51 | DDA3937_RS13700 | | excinuclease ABC subunit UvrC | 0.64 | DDA3937_RS15935 | | RNA polymerase-binding protein DksA | — | — |
| Shewanella amazonensis SB2B | 0.51 | Sama_1608 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.63 | Sama_0780 | | TraR/DksA family transcriptional regulator (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.51 | Shew_1825 | uvrC | excinuclease ABC subunit C (RefSeq) | 0.63 | Shew_3129 | | TraR/DksA family transcriptional regulator (RefSeq) | — | — |
| Enterobacter asburiae PDN3 | 0.51 | EX28DRAFT_0634 | | Excinuclease ABC subunit C | 0.64 | EX28DRAFT_3734 | | transcriptional regulator, TraR/DksA family | — | — |
| Pectobacterium carotovorum WPP14 | 0.51 | HER17_RS07715 | | excinuclease ABC subunit UvrC | 0.65 | HER17_RS05580 | | RNA polymerase-binding protein DksA | low | > 75 |
| Rahnella sp. WP5 | 0.51 | EX31_RS24150 | | excinuclease ABC subunit UvrC | 0.64 | EX31_RS03250 | | RNA polymerase-binding protein DksA | low | > 89 |
| Enterobacter sp. TBS_079 | 0.51 | MPMX20_02838 | | UvrABC system protein C | 0.64 | MPMX20_00831 | | RNA polymerase-binding transcription factor DksA | low | > 85 |
| Dechlorosoma suillum PS | 0.50 | Dsui_2470 | | excinuclease ABC, C subunit | 0.54 | Dsui_2717 | | RNA polymerase-binding protein DksA | low | > 51 |
| Kangiella aquimarina DSM 16071 | 0.50 | B158DRAFT_1273 | | Excinuclease ABC subunit C | 0.65 | B158DRAFT_0056 | | transcriptional regulator, TraR/DksA family | low | > 40 |
| Alteromonas macleodii MIT1002 | 0.49 | MIT1002_02153 | | Excinuclease ABC subunit C | 0.59 | MIT1002_03690 | | DnaK suppressor protein | low | > 70 |
| Herbaspirillum seropedicae SmR1 | 0.46 | HSERO_RS09690 | | excinuclease ABC subunit C | 0.34 | HSERO_RS00840 | | molecular chaperone DnaK | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.45 | RR42_RS14000 | | excinuclease ABC subunit C | 0.34 | RR42_RS01030 | | molecular chaperone DnaK | — | — |
| Ralstonia sp. UNC404CL21Col | 0.45 | ABZR87_RS10245 | | excinuclease ABC subunit UvrC | 0.35 | ABZR87_RS05100 | | RNA polymerase-binding protein DksA | low | > 80 |
| Ralstonia solanacearum GMI1000 | 0.44 | RS_RS05305 | | excinuclease ABC subunit UvrC | 0.33 | RS_RS00230 | | RNA polymerase-binding protein DksA | low | > 80 |
| Ralstonia solanacearum PSI07 | 0.44 | RPSI07_RS18935 | | excinuclease ABC subunit UvrC | 0.35 | RPSI07_RS23720 | | RNA polymerase-binding protein DksA | low | > 81 |
| Ralstonia solanacearum UW163 | 0.44 | UW163_RS11990 | | excinuclease ABC subunit UvrC | 0.33 | UW163_RS03935 | | RNA polymerase-binding protein DksA | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.44 | RALBFv3_RS14525 | | excinuclease ABC subunit UvrC | 0.33 | RALBFv3_RS09645 | | RNA polymerase-binding protein DksA | low | > 76 |
| Castellaniella sp019104865 MT123 | 0.44 | ABCV34_RS06980 | | excinuclease ABC subunit UvrC | 0.33 | ABCV34_RS13420 | | RNA polymerase-binding protein DksA | — | — |
| Rhodopseudomonas palustris CGA009 | 0.39 | TX73_006010 | | excinuclease ABC subunit UvrC | 0.36 | TX73_020255 | | RNA polymerase-binding protein DksA | low | > 86 |
| Phaeobacter inhibens DSM 17395 | 0.39 | PGA1_c02880 | | uvrABC system protein C | 0.35 | PGA1_c11040 | | dnaK suppressor protein DksA | low | > 62 |
| Azospirillum brasilense Sp245 | 0.39 | AZOBR_RS08965 | | excinuclease ABC subunit C | 0.37 | AZOBR_RS11245 | | molecular chaperone DnaK | — | — |
| Dinoroseobacter shibae DFL-12 | 0.39 | Dshi_0644 | | excinuclease ABC, C subunit (RefSeq) | 0.36 | Dshi_1884 | | transcriptional regulator, TraR/DksA family (RefSeq) | — | — |
| Azospirillum sp. SherDot2 | 0.38 | MPMX19_01070 | | UvrABC system protein C | 0.36 | MPMX19_01492 | | RNA polymerase-binding transcription factor DksA | low | > 112 |
| Rhodospirillum rubrum S1H | 0.38 | Rru_A2220 | | Excinuclease ABC, C subunit (NCBI) | 0.36 | Rru_A2847 | | Transcriptional regulators, TraR/DksA family (NCBI) | low | > 58 |
| Agrobacterium fabrum C58 | 0.37 | Atu1129 | | excinuclease ABC chain C | 0.38 | Atu1359 | | dnaK deletion suppressor protein | low | > 89 |
| Sphingomonas koreensis DSMZ 15582 | 0.36 | Ga0059261_3186 | | Excinuclease ABC subunit C | 0.31 | Ga0059261_0274 | | transcriptional regulator, TraR/DksA family | low | > 68 |
| Sinorhizobium meliloti 1021 | 0.36 | SMc00602 | | excinuclease ABC subunit C | 0.38 | SMc00469 | | DnaK suppressor protein | — | — |
| Magnetospirillum magneticum AMB-1 | 0.36 | AMB_RS19240 | | UvrABC system protein C | 0.36 | AMB_RS19350 | | RNA polymerase-binding protein DksA | — | — |
| Rhizobium sp. OAE497 | 0.35 | ABIE40_RS06500 | | excinuclease ABC subunit UvrC | 0.40 | ABIE40_RS10345 | | RNA polymerase-binding protein DksA | — | — |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.34 | A4249_RS01670 | | excinuclease ABC subunit UvrC | 0.36 | A4249_RS08530 | | RNA polymerase-binding protein DksA | 0.56 | 26 |
| Caulobacter crescentus NA1000 | 0.33 | CCNA_02975 | | excinuclease ABC subunit C | 0.37 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 66 |
| Caulobacter crescentus NA1000 Δfur | 0.33 | CCNA_02975 | | excinuclease ABC subunit C | 0.37 | CCNA_02663 | | DnaK suppressor protein DksA | low | > 67 |
Not shown: 26 genomes with orthologs for PP_4098 only; 2 genomes with orthologs for PP_4693 only