Conservation of cofitness between PP_0951 and PP_4008 in Pseudomonas putida KT2440

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0951 Ribosome hibernation promoting factor 1.0 PP_4008 ATP-dependent serine protease 0.44 20
Pseudomonas simiae WCS417 0.83 PS417_04340 ribosome hibernation promoting factor HPF 0.94 PS417_16510 Clp protease ClpX 0.39 19
Pseudomonas fluorescens FW300-N2E2 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH 0.94 Pf6N2E2_292 ATP-dependent Clp protease ATP-binding subunit ClpA low > 103
Pseudomonas fluorescens FW300-N2C3 0.81 AO356_07040 hypothetical protein 0.94 AO356_22150 ATP-dependent Clp protease ATP-binding subunit ClpA low > 104
Pseudomonas fluorescens FW300-N1B4 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH 0.94 Pf1N1B4_4055 ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Pseudomonas fluorescens GW456-L13 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH 0.94 PfGW456L13_2646 ATP-dependent Clp protease ATP-binding subunit ClpA low > 87
Pseudomonas sp. RS175 0.80 PFR28_00172 Ribosome hibernation promoting factor 0.95 PFR28_02613 ATP-dependent Clp protease ATP-binding subunit ClpA low > 88
Pseudomonas fluorescens FW300-N2E3 0.80 AO353_05185 hypothetical protein 0.94 AO353_27675 ATP-dependent Clp protease ATP-binding subunit ClpA low > 101
Pseudomonas syringae pv. syringae B728a ΔmexB 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.93 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Pseudomonas syringae pv. syringae B728a 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P 0.93 Psyr_3183 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Pseudomonas sp. S08-1 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf 0.91 OH686_00235 ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Pseudomonas fluorescens SBW25-INTG 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.93 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA 0.33 4
Pseudomonas fluorescens SBW25 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA 0.93 PFLU_RS18550 ATP-dependent Clp protease ATP-binding subunit ClpA low > 109
Pseudomonas stutzeri RCH2 0.66 Psest_3314 ribosomal subunit interface protein 0.92 Psest_2027 ATP-dependent Clp protease ATP-binding subunit clpA low > 67
Shewanella loihica PV-4 0.63 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) 0.68 Shew_1566 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 60
Marinobacter adhaerens HP15 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA 0.79 HP15_2080 ATP-dependent Clp protease ATP-binding subunit ClpA 0.68 10
Shewanella amazonensis SB2B 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) 0.70 Sama_2056 ATP-dependent Clp protease, ATP-binding subunit ClpA (RefSeq) low > 62
Alteromonas macleodii MIT1002 0.60 MIT1002_00826 Ribosome hibernation promoting factor 0.67 MIT1002_01834 ATP-dependent Clp protease ATP-binding subunit ClpA low > 70
Kangiella aquimarina DSM 16071 0.59 B158DRAFT_2079 ribosomal subunit interface protein 0.68 B158DRAFT_1505 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 40
Shewanella sp. ANA-3 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) 0.70 Shewana3_1753 ATP-dependent Clp protease, ATP-binding subunit clpA (RefSeq) low > 73
Rahnella sp. WP5 0.58 EX31_RS12395 ribosome hibernation promoting factor 0.66 EX31_RS18560 ATP-dependent Clp protease ATP-binding subunit ClpA low > 89
Shewanella oneidensis MR-1 0.58 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) 0.69 SO2626 clpA ATP-dependent Clp protease, ATP-binding subunit ClpA (NCBI ptt file) low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS20065 ribosome hibernation promoting factor 0.67 HER17_RS12400 ATP-dependent Clp protease ATP-binding subunit ClpA 0.73 33
Serratia liquefaciens MT49 0.55 IAI46_22475 ribosome hibernation promoting factor 0.66 IAI46_08515 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Erwinia tracheiphila SCR3 0.53 LU632_RS21285 hpf ribosome hibernation promoting factor 0.64 LU632_RS09705 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Pantoea sp. MT58 0.53 IAI47_17190 ribosome hibernation promoting factor 0.67 IAI47_12945 ATP-dependent Clp protease ATP-binding subunit ClpA low > 76
Escherichia coli BL21 0.53 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers 0.67 ECD_00887 ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity low > 60
Escherichia coli ECRC99 0.53 KEDOAH_10215 Ribosome hibernation promoting factor 0.67 KEDOAH_22125 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli Nissle 1917 0.53 ECOLIN_RS18430 ribosome hibernation promoting factor 0.67 ECOLIN_RS04695 ATP-dependent Clp protease ATP-binding subunit ClpA low > 52
Escherichia coli ECRC101 0.53 MCAODC_08455 Ribosome hibernation promoting factor 0.67 MCAODC_25000 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.53 OHPLBJKB_00497 Ribosome hibernation promoting factor 0.67 OHPLBJKB_02786 ATP-dependent Clp protease ATP-binding subunit ClpA low > 73
Escherichia coli ECRC62 0.53 BNILDI_01800 Ribosome hibernation promoting factor 0.67 BNILDI_20435 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli BW25113 0.53 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) 0.67 b0882 clpA ATPase and specificity subunit of ClpA-ClpP ATP-dependent serine protease, chaperone activity (NCBI) low > 76
Escherichia coli ECOR38 0.53 HEPCGN_16810 Ribosome hibernation promoting factor 0.67 HEPCGN_22900 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 85
Escherichia coli ECOR27 0.53 NOLOHH_09735 Ribosome hibernation promoting factor 0.67 NOLOHH_22180 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 57
Escherichia fergusonii Becca 0.53 EFB2_00620 Ribosome hibernation promoting factor 0.67 EFB2_03179 ATP-dependent Clp protease ATP-binding subunit ClpA low > 86
Escherichia coli ECRC101 0.53 OKFHMN_17935 Ribosome hibernation promoting factor 0.67 OKFHMN_05785 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECRC98 0.53 JDDGAC_21560 Ribosome hibernation promoting factor 0.67 JDDGAC_09420 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Escherichia coli ECRC102 0.53 NIAGMN_15695 Ribosome hibernation promoting factor 0.67 NIAGMN_03825 clpA ATP-dependent Clp protease ATP-binding subunit ClpA — —
Dechlorosoma suillum PS 0.52 Dsui_0703 ribosomal subunit interface protein 0.66 Dsui_0009 ATP-dependent Clp protease ATP-binding subunit clpA 0.88 24
Enterobacter asburiae PDN3 0.52 EX28DRAFT_3257 ribosomal subunit interface protein 0.67 EX28DRAFT_2050 ATP-dependent Clp protease ATP-binding subunit ClpA (EC 3.4.21.92) low > 76
Enterobacter sp. TBS_079 0.51 MPMX20_04109 Ribosome hibernation promoting factor 0.67 MPMX20_01544 ATP-dependent Clp protease ATP-binding subunit ClpA low > 85
Klebsiella michiganensis M5al 0.51 BWI76_RS25270 ribosome hibernation promoting factor 0.67 BWI76_RS09615 ATP-dependent Clp protease ATP-binding subunit ClpA low > 92
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_12820 ribosome hibernation promoting factor 0.67 CSW01_05805 ATP-dependent Clp protease ATP-binding subunit ClpA low > 62
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.51 GFF2947 Ribosome hibernation protein YhbH 0.67 GFF4901 ATP-dependent Clp protease ATP-binding subunit ClpA low > 78
Dickeya dianthicola 67-19 0.51 HGI48_RS01440 ribosome hibernation promoting factor 0.66 HGI48_RS09575 ATP-dependent Clp protease ATP-binding subunit ClpA low > 71
Dickeya dadantii 3937 0.51 DDA3937_RS01525 ribosome hibernation promoting factor 0.67 DDA3937_RS09560 ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Dickeya dianthicola ME23 0.51 DZA65_RS01505 ribosome hibernation promoting factor 0.66 DZA65_RS09885 ATP-dependent Clp protease ATP-binding subunit ClpA low > 75
Hydrogenophaga sp. GW460-11-11-14-LB1 0.46 GFF2612 Ribosome hibernation protein YhbH 0.64 GFF4521 ATP-dependent Clp protease ATP-binding subunit ClpA low > 90
Cupriavidus basilensis FW507-4G11 0.46 RR42_RS02080 ribosome hibernation promoting factor 0.64 RR42_RS17105 Clp protease ClpX low > 128
Acidovorax sp. GW101-3H11 0.46 Ac3H11_681 Ribosome hibernation protein YhbH 0.64 Ac3H11_2456 ATP-dependent Clp protease ATP-binding subunit ClpA low > 79
Variovorax sp. SCN45 0.45 GFF7293 Ribosome hibernation promoting factor Hpf 0.64 GFF341 ATP-dependent Clp protease ATP-binding subunit ClpA low > 127
Variovorax sp. OAS795 0.45 ABID97_RS04490 ribosome-associated translation inhibitor RaiA 0.63 ABID97_RS16910 ATP-dependent Clp protease ATP-binding subunit ClpA low > 91
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22135 ribosomal subunit interface protein 0.64 RPSI07_RS12575 ATP-dependent Clp protease ATP-binding subunit ClpA low > 81
Ralstonia solanacearum UW163 0.43 UW163_RS02415 ribosomal subunit interface protein 0.64 UW163_RS08860 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS11165 ribosomal subunit interface protein 0.64 RALBFv3_RS04810 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Castellaniella sp019104865 MT123 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA 0.62 ABCV34_RS05305 ATP-dependent Clp protease ATP-binding subunit ClpA low > 48
Ralstonia solanacearum GMI1000 0.43 RS_RS02015 ribosomal subunit interface protein 0.65 RS_RS12370 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Lysobacter sp. OAE881 0.41 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA 0.67 ABIE51_RS11490 ATP-dependent Clp protease ATP-binding subunit ClpA low > 62
Burkholderia phytofirmans PsJN 0.41 BPHYT_RS02900 ribosome hibernation promoting factor 0.64 BPHYT_RS15710 ATP-dependent Clp protease ATP-binding protein low > 109
Ralstonia sp. UNC404CL21Col 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA 0.65 ABZR87_RS00435 ATP-dependent Clp protease ATP-binding subunit ClpA low > 80
Paraburkholderia bryophila 376MFSha3.1 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P 0.64 H281DRAFT_04082 ATP-dependent Clp protease ATP-binding subunit ClpA low > 103
Rhodanobacter sp. FW510-T8 0.39 OKGIIK_02260 raiA ribosomal subunit interface protein 0.68 OKGIIK_06890 clpA ATP-dependent Clp protease ATP-binding subunit ClpA low > 52
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA 0.64 QEN71_RS03005 ATP-dependent Clp protease ATP-binding subunit ClpA low > 153
Rhodanobacter denitrificans MT42 0.39 LRK55_RS12570 ribosome-associated translation inhibitor RaiA 0.67 LRK55_RS00160 ATP-dependent Clp protease ATP-binding subunit ClpA low > 63
Rhodanobacter denitrificans FW104-10B01 0.39 LRK54_RS12870 ribosome-associated translation inhibitor RaiA 0.67 LRK54_RS00420 ATP-dependent Clp protease ATP-binding subunit ClpA low > 59
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA 0.69 ABZR86_RS02200 ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Xanthomonas campestris pv. campestris strain 8004 0.38 Xcc-8004.1661.1 Ribosome hibernation protein YhbH 0.66 Xcc-8004.2754.1 ATP-dependent Clp protease ATP-binding subunit ClpA low > 74
Acinetobacter radioresistens SK82 0.29 MPMX26_02591 Ribosome hibernation promoting factor 0.64 MPMX26_01284 ATP-dependent Clp protease ATP-binding subunit ClpA — —
Phocaeicola vulgatus CL09T03C04 0.28 HMPREF1058_RS09440 ribosome-associated translation inhibitor RaiA 0.40 HMPREF1058_RS09040 AAA family ATPase low > 67
Phocaeicola dorei CL03T12C01 0.27 ABI39_RS03830 ribosome-associated translation inhibitor RaiA 0.39 ABI39_RS03345 AAA family ATPase low > 72

Not shown: 4 genomes with orthologs for PP_0951 only; 18 genomes with orthologs for PP_4008 only