Conservation of cofitness between PP_1906 and PP_2160 in Pseudomonas putida KT2440

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_1906 ribosomal large subunit pseudouridine synthase C 1.0 PP_2160 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.34 10
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.82 Psyr_1907 GTP cyclohydrolase I — —
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_1639 ribosomal large subunit pseudouridine synthase C 0.82 Psyr_1907 GTP cyclohydrolase I low > 86
Pseudomonas sp. RS175 0.90 PFR28_03018 Ribosomal large subunit pseudouridine synthase C 0.81 PFR28_01136 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.31 7
Pseudomonas fluorescens FW300-N2E2 0.89 Pf6N2E2_5944 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.80 Pf6N2E2_2264 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 103
Pseudomonas fluorescens FW300-N2C3 0.89 AO356_20125 23S rRNA pseudouridylate synthase 0.80 AO356_02205 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 104
Pseudomonas simiae WCS417 0.88 PS417_21480 23S rRNA pseudouridylate synthase 0.81 PS417_07695 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 88
Pseudomonas fluorescens FW300-N1B4 0.88 Pf1N1B4_459 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.82 Pf1N1B4_65 NADPH dependent preQ0 reductase (EC 1.7.1.13) — —
Pseudomonas fluorescens SBW25 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas fluorescens SBW25-INTG 0.88 PFLU_RS23095 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.81 PFLU_RS07770 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 109
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_01405 23S rRNA pseudouridylate synthase 0.82 AO353_00345 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 101
Pseudomonas stutzeri RCH2 0.87 Psest_1680 pseudouridine synthase, RluA family 0.78 Psest_2714 7-cyano-7-deazaguanine reductase — —
Pseudomonas fluorescens GW456-L13 0.86 PfGW456L13_2097 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.82 PfGW456L13_4015 NADPH dependent preQ0 reductase (EC 1.7.1.13) 0.43 13
Pseudomonas sp. S08-1 0.86 OH686_22095 LSU rRNA pseudouridine(955/2504/2580) synthase 0.75 OH686_22700 queuine synthase low > 80
Pantoea sp. MT58 0.58 IAI47_12105 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.48 IAI47_04050 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Pectobacterium carotovorum WPP14 0.56 HER17_RS08615 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.46 HER17_RS16390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Rahnella sp. WP5 0.56 EX31_RS24400 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 EX31_RS13085 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 89
Erwinia tracheiphila SCR3 0.56 LU632_RS14855 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.47 LU632_RS06280 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Enterobacter sp. TBS_079 0.56 MPMX20_01766 Ribosomal large subunit pseudouridine synthase C 0.48 MPMX20_03664 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 85
Escherichia coli BW25113 0.56 b1086 rluC 23S rRNA pseudouridylate synthase (NCBI) 0.48 b2794 yqcD hypothetical protein (NCBI) low > 76
Alteromonas macleodii MIT1002 0.56 MIT1002_01725 Ribosomal large subunit pseudouridine synthase C 0.44 MIT1002_00988 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 70
Escherichia coli HS(pFamp)R (ATCC 700891) 0.56 OHPLBJKB_02580 Ribosomal large subunit pseudouridine synthase C 0.49 OHPLBJKB_00937 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 73
Escherichia coli BL21 0.56 ECD_01082 23S rRNA pseudouridine(955,2504,2580) synthase 0.49 ECD_02639 7-cyano-7-deazaguanine reductase (NADPH-dependent) low > 60
Escherichia fergusonii Becca 0.56 EFB2_02889 Ribosomal large subunit pseudouridine synthase C 0.49 EFB2_01123 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 86
Escherichia coli ECOR27 0.56 NOLOHH_21145 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 NOLOHH_12070 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 57
Escherichia coli ECOR38 0.56 HEPCGN_23865 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 HEPCGN_19445 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 85
Escherichia coli ECRC62 0.56 BNILDI_19305 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 BNILDI_10575 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli Nissle 1917 0.55 ECOLIN_RS06280 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 ECOLIN_RS15580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Escherichia coli ECRC102 0.55 NIAGMN_24215 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 NIAGMN_17960 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC98 0.55 JDDGAC_07275 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 JDDGAC_23855 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC99 0.55 KEDOAH_24140 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 KEDOAH_07940 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Escherichia coli ECRC101 0.55 OKFHMN_03615 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 OKFHMN_20190 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.55 GFF3366 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.48 GFF4849 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 78
Escherichia coli ECRC101 0.55 MCAODC_22975 rluC 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.49 MCAODC_10715 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Enterobacter asburiae PDN3 0.55 EX28DRAFT_1844 pseudouridine synthase, RluA family 0.48 EX28DRAFT_2876 7-cyano-7-deazaguanine reductase low > 76
Shewanella loihica PV-4 0.55 Shew_1594 RluA family pseudouridine synthase (RefSeq) 0.49 Shew_2654 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 60
Klebsiella michiganensis M5al 0.55 BWI76_RS11050 23S rRNA pseudouridine(955/2504/2580) synthase 0.47 BWI76_RS22865 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 92
Shewanella amazonensis SB2B 0.55 Sama_1988 pseudouridylate synthase (RefSeq) 0.47 Sama_1120 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 62
Kangiella aquimarina DSM 16071 0.55 B158DRAFT_1770 ribosomal large subunit pseudouridine synthase C (EC 5.4.99.24) 0.45 B158DRAFT_2159 7-cyano-7-deazaguanine reductase low > 40
Dickeya dadantii 3937 0.54 DDA3937_RS13155 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.47 DDA3937_RS04655 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Serratia liquefaciens MT49 0.54 IAI46_09755 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 IAI46_21580 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 86
Dickeya dianthicola ME23 0.53 DZA65_RS13690 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.46 DZA65_RS04535 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 75
Dickeya dianthicola 67-19 0.53 HGI48_RS13220 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.46 HGI48_RS04615 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 71
Shewanella sp. ANA-3 0.53 Shewana3_2566 ribosomal large subunit pseudouridine synthase C (RefSeq) 0.48 Shewana3_2835 queF 7-cyano-7-deazaguanine reductase (RefSeq) low > 73
Marinobacter adhaerens HP15 0.51 HP15_2221 pseudouridine synthase, RluA family 0.42 HP15_1463 NADPH-dependent 7-cyano-7-deazaguanine reductase 0.32 26
Vibrio cholerae E7946 ATCC 55056 0.51 CSW01_10130 23S rRNA pseudouridine(955/2504/2580) synthase RluC 0.50 CSW01_04620 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Herbaspirillum seropedicae SmR1 0.46 HSERO_RS09415 ribosomal large subunit pseudouridine synthase C 0.45 HSERO_RS19515 7-cyano-7-deazaguanine reductase low > 78
Rhodanobacter denitrificans MT42 0.46 LRK55_RS17750 RluA family pseudouridine synthase 0.53 LRK55_RS10150 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 63
Rhodanobacter denitrificans FW104-10B01 0.45 LRK54_RS17895 RluA family pseudouridine synthase 0.53 LRK54_RS10510 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 59
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_07405 rluA 23S rRNA pseudouridine(955/2504/2580) synthase 0.54 OKGIIK_13395 queF NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 52
Lysobacter sp. OAE881 0.45 ABIE51_RS11800 RluA family pseudouridine synthase 0.44 ABIE51_RS00515 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 62
Paraburkholderia graminis OAS925 0.45 ABIE53_003058 23S rRNA pseudouridine955/2504/2580 synthase 0.46 ABIE53_000759 7-cyano-7-deazaguanine reductase low > 113
Paraburkholderia sabiae LMG 24235 0.44 QEN71_RS04500 RluA family pseudouridine synthase 0.47 QEN71_RS01975 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 153
Xanthomonas campestris pv. campestris strain 8004 0.44 Xcc-8004.2616.1 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.44 Xcc-8004.4789.1 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 74
Cupriavidus basilensis FW507-4G11 0.44 RR42_RS14155 pseudouridine synthase 0.49 RR42_RS02310 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 128
Dechlorosoma suillum PS 0.44 Dsui_2437 pseudouridine synthase, RluA family 0.53 Dsui_0505 7-cyano-7-deazaguanine reductase low > 51
Paraburkholderia bryophila 376MFSha3.1 0.44 H281DRAFT_04340 23S rRNA pseudouridine955/2504/2580 synthase 0.46 H281DRAFT_01889 7-cyano-7-deazaguanine reductase low > 103
Ralstonia solanacearum GMI1000 0.44 RS_RS05155 RluA family pseudouridine synthase 0.50 RS_RS02220 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS10090 RluA family pseudouridine synthase 0.49 ABZR87_RS07355 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 80
Ralstonia solanacearum PSI07 0.44 RPSI07_RS19085 RluA family pseudouridine synthase 0.50 RPSI07_RS21815 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 81
Ralstonia solanacearum UW163 0.43 UW163_RS11840 RluA family pseudouridine synthase 0.50 UW163_RS02195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF — —
Ralstonia solanacearum IBSBF1503 0.43 RALBFv3_RS14375 RluA family pseudouridine synthase 0.50 RALBFv3_RS11390 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 76
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS14480 ribosomal large subunit pseudouridine synthase C 0.46 BPHYT_RS03135 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 109
Variovorax sp. SCN45 0.43 GFF3847 LSU rRNA pseudouridine(955/2504/2580) synthase (EC 5.4.99.24) 0.45 GFF6017 NADPH-dependent 7-cyano-7-deazaguanine reductase (EC 1.7.1.13) low > 127
Dyella japonica UNC79MFTsu3.2 0.43 ABZR86_RS02725 RluA family pseudouridine synthase 0.52 ABZR86_RS16195 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 74
Variovorax sp. OAS795 0.43 ABID97_RS08250 RluA family pseudouridine synthase 0.43 ABID97_RS07920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 91
Acidovorax sp. GW101-3H11 0.42 Ac3H11_1590 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.45 Ac3H11_1595 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 79
Acinetobacter radioresistens SK82 0.42 MPMX26_00317 Ribosomal large subunit pseudouridine synthase C 0.38 MPMX26_02105 NADPH-dependent 7-cyano-7-deazaguanine reductase low > 36
Hydrogenophaga sp. GW460-11-11-14-LB1 0.41 GFF121 Ribosomal large subunit pseudouridine synthase C (EC 4.2.1.70) 0.47 GFF722 NADPH dependent preQ0 reductase (EC 1.7.1.13) low > 90
Castellaniella sp019104865 MT123 0.40 ABCV34_RS08415 RluA family pseudouridine synthase 0.42 ABCV34_RS06920 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF low > 48

Not shown: 15 genomes with orthologs for PP_1906 only; 1 genomes with orthologs for PP_2160 only