Conservation of cofitness between PP_0937 and PP_2148 in Pseudomonas putida KT2440

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0937 endoribonuclease G (RNAse G) 1.0 PP_2148 transcription-repair coupling factor 0.57 2
Pseudomonas simiae WCS417 0.92 PS417_04270 ribonuclease G 0.87 PS417_07635 transcription-repair coupling factor low > 88
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_05230 ribonuclease G 0.89 AO353_00435 transcription-repair coupling factor 0.32 86
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_07110 ribonuclease G 0.89 AO356_02270 transcription-repair coupling factor low > 104
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.89 Pf6N2E2_2278 Transcription-repair coupling factor low > 103
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS04325 ribonuclease G 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS04325 ribonuclease G 0.87 PFLU_RS07710 transcription-repair coupling factor low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.87 PfGW456L13_4027 Transcription-repair coupling factor low > 87
Pseudomonas sp. RS175 0.91 PFR28_00158 Ribonuclease G 0.89 PFR28_01123 Transcription-repair-coupling factor low > 88
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.87 Pf1N1B4_3916 Transcription-repair coupling factor low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_4159 RNAse G 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_4159 RNAse G 0.87 Psyr_1896 transcription-repair coupling factor low > 86
Pseudomonas sp. S08-1 0.89 OH686_08595 Ribonuclease G 0.84 OH686_21990 transcription-repair coupling factor 0.51 16
Pseudomonas stutzeri RCH2 0.89 Psest_3323 ribonuclease, Rne/Rng family 0.85 Psest_1653 transcription-repair coupling factor (mfd) low > 67
Marinobacter adhaerens HP15 0.68 HP15_2451 ribonuclease, Rne/Rng family 0.62 HP15_2257 transcription-repair-coupling factor low > 73
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2069 ribonuclease, Rne/Rng family 0.54 B158DRAFT_1800 transcription-repair coupling factor low > 40
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_10290 rng ribonuclease G 0.54 OKGIIK_09105 mfd transcription-repair coupling factor low > 52
Alteromonas macleodii MIT1002 0.59 MIT1002_00224 Ribonuclease G 0.57 MIT1002_01646 Transcription-repair-coupling factor low > 70
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS21730 ribonuclease G 0.56 ABZR86_RS21210 transcription-repair coupling factor low > 74
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS24430 ribonuclease G 0.49 QEN71_RS22060 transcription-repair coupling factor low > 153
Lysobacter sp. OAE881 0.59 ABIE51_RS06785 ribonuclease G 0.54 ABIE51_RS14320 transcription-repair coupling factor low > 62
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04515 RNAse G 0.49 H281DRAFT_00880 transcription-repair coupling factor low > 103
Paraburkholderia graminis OAS925 0.59 ABIE53_001538 ribonuclease G 0.50 ABIE53_002095 transcription-repair coupling factor (superfamily II helicase) low > 113
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.1880.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.53 Xcc-8004.1775.1 Transcription-repair coupling factor low > 74
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS06375 ribonuclease 0.49 BPHYT_RS09290 helicase 0.53 90
Herbaspirillum seropedicae SmR1 0.58 HSERO_RS17790 ribonuclease 0.49 HSERO_RS15180 transcription-repair coupling factor — —
Dechlorosoma suillum PS 0.58 Dsui_0434 ribonuclease, Rne/Rng family 0.48 Dsui_2385 transcription-repair coupling factor Mfd low > 51
Rhodanobacter denitrificans MT42 0.58 LRK55_RS03155 ribonuclease G 0.55 LRK55_RS01815 transcription-repair coupling factor low > 63
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_02205 ribonuclease E/G 0.56 CSW01_09445 transcription-repair coupling factor low > 62
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS03405 ribonuclease G 0.55 LRK54_RS02040 transcription-repair coupling factor low > 59
Klebsiella michiganensis M5al 0.58 BWI76_RS25480 ribonuclease E/G 0.55 BWI76_RS11205 transcription-repair coupling factor low > 92
Dickeya dadantii 3937 0.57 DDA3937_RS01450 ribonuclease G 0.55 DDA3937_RS13000 transcription-repair coupling factor low > 74
Acinetobacter radioresistens SK82 0.57 MPMX26_00646 Ribonuclease G 0.52 MPMX26_01319 Transcription-repair-coupling factor low > 36
Dickeya dianthicola 67-19 0.57 HGI48_RS01370 ribonuclease G 0.55 HGI48_RS13065 transcription-repair coupling factor low > 71
Dickeya dianthicola ME23 0.57 DZA65_RS01430 ribonuclease G 0.55 DZA65_RS13530 transcription-repair coupling factor low > 75
Rahnella sp. WP5 0.57 EX31_RS12255 ribonuclease G 0.55 EX31_RS24520 transcription-repair coupling factor low > 89
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.55 GFF3397 Transcription-repair coupling factor low > 78
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3297 ribonuclease, Rne/Rng family 0.54 EX28DRAFT_1816 transcription-repair coupling factor (mfd) low > 76
Enterobacter sp. TBS_079 0.57 MPMX20_04153 Ribonuclease G 0.54 MPMX20_01795 Transcription-repair-coupling factor low > 85
Pantoea sp. MT58 0.57 IAI47_02455 ribonuclease G 0.55 IAI47_11975 transcription-repair coupling factor low > 76
Escherichia coli ECRC99 0.57 KEDOAH_10405 rng ribonuclease G 0.55 KEDOAH_24285 mfd transcription-repair coupling factor — —
Escherichia coli ECOR27 0.57 NOLOHH_09530 rng ribonuclease G 0.55 NOLOHH_20995 mfd transcription-repair coupling factor low > 57
Escherichia fergusonii Becca 0.57 EFB2_00584 Ribonuclease G 0.55 EFB2_02861 Transcription-repair-coupling factor low > 86
Escherichia coli BL21 0.57 ECD_03106 ribonuclease G 0.55 ECD_01110 transcription-repair coupling factor low > 60
Escherichia coli ECRC102 0.57 NIAGMN_15505 rng ribonuclease G 0.55 NIAGMN_24360 mfd transcription-repair coupling factor — —
Escherichia coli ECRC62 0.57 BNILDI_01990 rng ribonuclease G 0.55 BNILDI_19160 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.57 MCAODC_08265 rng ribonuclease G 0.55 MCAODC_22830 mfd transcription-repair coupling factor — —
Escherichia coli ECOR38 0.57 HEPCGN_16610 rng ribonuclease G 0.55 HEPCGN_24015 mfd transcription-repair coupling factor low > 85
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00458 Ribonuclease G 0.55 OHPLBJKB_02552 Transcription-repair-coupling factor low > 73
Pectobacterium carotovorum WPP14 0.57 HER17_RS20150 ribonuclease G 0.55 HER17_RS08775 transcription-repair coupling factor low > 75
Escherichia coli BW25113 0.57 b3247 cafA bundles of cytoplasmic filaments (VIMSS) 0.55 b1114 mfd transcription-repair coupling factor (NCBI) low > 76
Escherichia coli ECRC98 0.57 JDDGAC_21370 rng ribonuclease G 0.55 JDDGAC_07130 mfd transcription-repair coupling factor — —
Escherichia coli ECRC101 0.57 OKFHMN_17745 rng ribonuclease G 0.55 OKFHMN_03470 mfd transcription-repair coupling factor — —
Shewanella sp. ANA-3 0.57 Shewana3_3644 ribonuclease G (RefSeq) 0.55 Shewana3_2289 transcription-repair coupling factor (RefSeq) low > 73
Shewanella oneidensis MR-1 0.56 SO4094 cafA ribonuclease G (NCBI ptt file) 0.55 SO2255 mfd transcription-repair coupling factor (NCBI ptt file) low > 76
Serratia liquefaciens MT49 0.56 IAI46_22700 ribonuclease G 0.56 IAI46_10320 transcription-repair coupling factor low > 86
Erwinia tracheiphila SCR3 0.56 LU632_RS21430 rng ribonuclease G 0.54 LU632_RS14730 mfd transcription-repair coupling factor low > 74
Shewanella loihica PV-4 0.56 Shew_0407 ribonuclease G (RefSeq) 0.55 Shew_1630 transcription-repair coupling factor (RefSeq) low > 60
Shewanella amazonensis SB2B 0.56 Sama_0471 ribonuclease G (RefSeq) 0.55 Sama_1330 transcription-repair coupling factor (RefSeq) low > 62
Castellaniella sp019104865 MT123 0.55 ABCV34_RS02480 ribonuclease G 0.47 ABCV34_RS08660 transcription-repair coupling factor low > 48
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS04700 ribonuclease G 0.48 RR42_RS07845 transcription-repair coupling factor low > 128
Ralstonia solanacearum GMI1000 0.55 RS_RS11025 ribonuclease G 0.49 RS_RS08275 transcription-repair coupling factor — —
Ralstonia solanacearum PSI07 0.55 RPSI07_RS13650 ribonuclease G 0.48 RPSI07_RS16040 transcription-repair coupling factor — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS03575 ribonuclease G 0.49 RALBFv3_RS01445 transcription-repair coupling factor — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS15440 ribonuclease G 0.50 ABZR87_RS13240 transcription-repair coupling factor low > 80
Ralstonia solanacearum UW163 0.55 UW163_RS10095 ribonuclease G 0.49 UW163_RS14755 transcription-repair coupling factor — —
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2416 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.48 Ac3H11_328 Transcription-repair coupling factor low > 79
Variovorax sp. OAS795 0.53 ABID97_RS16705 ribonuclease G 0.49 ABID97_RS17285 transcription-repair coupling factor low > 91
Variovorax sp. SCN45 0.53 GFF295 Ribonuclease G 0.49 GFF412 Transcription-repair coupling factor low > 127
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4531 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.49 GFF4934 Transcription-repair coupling factor 0.72 5

Not shown: 3 genomes with orthologs for PP_0937 only; 18 genomes with orthologs for PP_2148 only