Conservation of cofitness between PP_0850 and PP_1702 in Pseudomonas putida KT2440

67 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0850 Dual-specificity RNA methyltransferase RlmN 1.0 PP_1702 Recombination-associated protein RdgC 0.31 11
Pseudomonas fluorescens FW300-N2C3 0.88 AO356_06605 23S rRNA (adenine(2503)-C2)-methyltransferase 0.86 AO356_19265 recombination-associated protein RdgC low > 104
Pseudomonas fluorescens FW300-N2E2 0.88 Pf6N2E2_3181 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.86 Pf6N2E2_5768 DNA recombination-dependent growth factor C — —
Pseudomonas sp. RS175 0.88 PFR28_00294 Dual-specificity RNA methyltransferase RlmN 0.85 PFR28_03182 Recombination-associated protein RdgC low > 88
Pseudomonas fluorescens FW300-N2E3 0.87 AO353_15875 23S rRNA (adenine(2503)-C2)-methyltransferase 0.87 AO353_02515 recombination-associated protein RdgC low > 101
Pseudomonas fluorescens GW456-L13 0.87 PfGW456L13_4865 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.85 PfGW456L13_4216 DNA recombination-dependent growth factor C low > 87
Pseudomonas fluorescens SBW25-INTG 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.84 PFLU_RS09255 recombination-associated protein RdgC low > 109
Pseudomonas fluorescens SBW25 0.87 PFLU_RS24815 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.84 PFLU_RS09255 recombination-associated protein RdgC low > 109
Pseudomonas simiae WCS417 0.87 PS417_23160 50S rRNA methyltransferase 0.85 PS417_09245 recombinase RdgC low > 88
Pseudomonas fluorescens FW300-N1B4 0.87 Pf1N1B4_857 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.86 Pf1N1B4_3731 DNA recombination-dependent growth factor C — —
Pseudomonas syringae pv. syringae B728a 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.86 Psyr_1588 Putative exonuclease, RdgC low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.86 Psyr_1245 23S rRNA m(2)A-2503 methyltransferase 0.86 Psyr_1588 Putative exonuclease, RdgC low > 86
Pseudomonas sp. S08-1 0.85 OH686_17515 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.79 OH686_19640 DNA recombination-dependent growth factor RdgC low > 80
Pseudomonas stutzeri RCH2 0.84 Psest_1259 23S rRNA m2A2503 methyltransferase 0.78 Psest_1532 DNA recombination-dependent growth factor C low > 67
Marinobacter adhaerens HP15 0.66 HP15_1490 conserved hypothetical protein 0.43 HP15_1221 recombination-associated protein rdgC low > 73
Kangiella aquimarina DSM 16071 0.57 B158DRAFT_1149 23S rRNA m2A2503 methyltransferase 0.23 B158DRAFT_1192 DNA recombination-dependent growth factor C low > 40
Lysobacter sp. OAE881 0.56 ABIE51_RS09415 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.32 ABIE51_RS01300 recombination-associated protein RdgC — —
Escherichia coli ECRC99 0.56 KEDOAH_06510 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 KEDOAH_19395 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC101 0.56 MCAODC_12240 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 MCAODC_27795 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC101 0.56 OKFHMN_21710 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 OKFHMN_08570 rdgC recombination-associated protein RdgC — —
Escherichia coli ECOR38 0.56 HEPCGN_20830 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 HEPCGN_07210 rdgC recombination-associated protein RdgC 0.66 67
Escherichia coli BW25113 0.56 b2517 yfgB predicted enzyme (NCBI) 0.45 b0393 rdgC recombination associated protein (NCBI) low > 76
Escherichia coli ECOR27 0.56 NOLOHH_13360 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 NOLOHH_01500 rdgC recombination-associated protein RdgC low > 57
Escherichia fergusonii Becca 0.56 EFB2_01373 Dual-specificity RNA methyltransferase RlmN 0.45 EFB2_03663 Recombination-associated protein RdgC low > 86
Escherichia coli ECRC102 0.56 NIAGMN_19480 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 NIAGMN_06625 rdgC recombination-associated protein RdgC — —
Escherichia coli ECRC98 0.56 JDDGAC_25385 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 JDDGAC_12225 rdgC recombination-associated protein RdgC — —
Escherichia coli Nissle 1917 0.56 ECOLIN_RS14300 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 ECOLIN_RS02385 recombination-associated protein RdgC low > 52
Escherichia coli BL21 0.56 ECD_02409 dual specificity 23S rRNA m(2)A2503, tRNA m(2)A37 methyltransferase, SAM-dependent 0.45 ECD_00342 nucleoid-associated ssDNA and dsDNA binding protein; competitive inhibitor of RecA function 0.73 41
Escherichia coli ECRC62 0.56 BNILDI_12160 rlmN bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.45 BNILDI_22915 rdgC recombination-associated protein RdgC — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.55 OHPLBJKB_01192 Dual-specificity RNA methyltransferase RlmN 0.45 OHPLBJKB_03282 Recombination-associated protein RdgC low > 73
Enterobacter asburiae PDN3 0.55 EX28DRAFT_0126 23S rRNA (adenine(2503)-C(2))-methyltransferase 0.43 EX28DRAFT_2579 DNA recombination-dependent growth factor C low > 76
Enterobacter sp. TBS_079 0.55 MPMX20_03395 Dual-specificity RNA methyltransferase RlmN 0.43 MPMX20_00982 Recombination-associated protein RdgC low > 85
Dickeya dadantii 3937 0.55 DDA3937_RS15480 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.44 DDA3937_RS05405 recombination-associated protein RdgC low > 74
Klebsiella michiganensis M5al 0.55 BWI76_RS21095 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.43 BWI76_RS06205 recombination-associated protein RdgC low > 92
Pectobacterium carotovorum WPP14 0.55 HER17_RS06085 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.43 HER17_RS16060 recombination-associated protein RdgC low > 75
Shewanella sp. ANA-3 0.54 Shewana3_1226 hypothetical protein (RefSeq) 0.39 Shewana3_2881 rdgC recombination associated protein (RefSeq) low > 73
Rahnella sp. WP5 0.54 EX31_RS20525 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.44 EX31_RS21990 recombination-associated protein RdgC low > 89
Cupriavidus basilensis FW507-4G11 0.54 RR42_RS13155 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.28 RR42_RS17820 recombinase RdgC — —
Shewanella oneidensis MR-1 0.54 SO3315 conserved hypothetical protein TIGR00048 (NCBI ptt file) 0.39 SO1556 conserved hypothetical protein (NCBI ptt file) low > 76
Erwinia tracheiphila SCR3 0.54 LU632_RS17815 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.42 LU632_RS18955 rdgC recombination-associated protein RdgC low > 74
Serratia liquefaciens MT49 0.54 IAI46_19290 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.43 IAI46_04710 recombination-associated protein RdgC low > 86
Dickeya dianthicola ME23 0.54 DZA65_RS16665 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.43 DZA65_RS05790 recombination-associated protein RdgC low > 75
Dickeya dianthicola 67-19 0.54 HGI48_RS15590 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.43 HGI48_RS05465 recombination-associated protein RdgC — —
Dechlorosoma suillum PS 0.54 Dsui_3145 23S rRNA m2A2503 methyltransferase 0.33 Dsui_2147 DNA recombination-dependent growth factor C — —
Ralstonia sp. UNC404CL21Col 0.54 ABZR87_RS10900 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.27 ABZR87_RS18475 recombination-associated protein RdgC low > 80
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.54 GFF2414 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.44 GFF4290 DNA recombination-dependent growth factor C low > 78
Ralstonia solanacearum GMI1000 0.54 RS_RS06070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.25 RS_RS03100 recombination-associated protein RdgC low > 80
Ralstonia solanacearum PSI07 0.54 RPSI07_RS18115 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.25 RPSI07_RS20910 recombination-associated protein RdgC low > 81
Ralstonia solanacearum IBSBF1503 0.54 RALBFv3_RS15260 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.27 RALBFv3_RS12420 recombination-associated protein RdgC — —
Ralstonia solanacearum UW163 0.54 UW163_RS12725 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.27 UW163_RS01150 recombination-associated protein RdgC — —
Rhodanobacter denitrificans FW104-10B01 0.53 LRK54_RS00070 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.33 LRK54_RS10690 recombination-associated protein RdgC — —
Rhodanobacter denitrificans MT42 0.53 LRK55_RS18065 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.33 LRK55_RS10330 recombination-associated protein RdgC — —
Shewanella amazonensis SB2B 0.53 Sama_2368 hypothetical protein (RefSeq) 0.41 Sama_1072 rdgC recombination associated protein (RefSeq) low > 62
Shewanella loihica PV-4 0.53 Shew_1287 hypothetical protein (RefSeq) 0.39 Shew_2751 rdgC recombination associated protein (RefSeq) low > 60
Rhodanobacter sp. FW510-T8 0.53 OKGIIK_07140 rlmN 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.34 OKGIIK_13190 rdgC recombination-associated protein RdgC — —
Xanthomonas campestris pv. campestris strain 8004 0.53 Xcc-8004.2737.1 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.34 Xcc-8004.5210.1 DNA recombination-dependent growth factor C — —
Dyella japonica UNC79MFTsu3.2 0.53 ABZR86_RS05455 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.35 ABZR86_RS16505 recombination-associated protein RdgC — —
Pantoea sp. MT58 0.53 IAI47_05040 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.44 IAI47_14910 recombination-associated protein RdgC low > 76
Vibrio cholerae E7946 ATCC 55056 0.53 CSW01_03930 bifunctional tRNA (adenosine(37)-C2)-methyltransferase TrmG/ribosomal RNA large subunit methyltransferase RlmN 0.43 CSW01_03755 recombination-associated protein RdgC low > 62
Paraburkholderia sabiae LMG 24235 0.53 QEN71_RS05965 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.25 QEN71_RS20685 recombination-associated protein RdgC low > 153
Burkholderia phytofirmans PsJN 0.52 BPHYT_RS12590 dual-specificity RNA methyltransferase RlmN 0.25 BPHYT_RS06215 recombinase RdgC low > 109
Paraburkholderia bryophila 376MFSha3.1 0.52 H281DRAFT_00514 23S rRNA m(2)A-2503 methyltransferase 0.26 H281DRAFT_00319 recombination associated protein RdgC — —
Paraburkholderia graminis OAS925 0.52 ABIE53_002744 23S rRNA (adenine2503-C2)-methyltransferase 0.26 ABIE53_001446 recombination associated protein RdgC 0.32 101
Herbaspirillum seropedicae SmR1 0.51 HSERO_RS14810 50S rRNA methyltransferase 0.30 HSERO_RS21640 recombinase RdgC — —
Alteromonas macleodii MIT1002 0.50 MIT1002_02791 Dual-specificity RNA methyltransferase RlmN 0.31 MIT1002_00749 Recombination-associated protein RdgC low > 70
Hydrogenophaga sp. GW460-11-11-14-LB1 0.50 GFF4866 Ribosomal RNA large subunit methyltransferase N (EC 2.1.1.-) 0.22 GFF5355 DNA recombination-dependent growth factor C — —
Variovorax sp. SCN45 0.49 GFF992 23S rRNA (adenine(2503)-C(2))-methyltransferase @ tRNA (adenine(37)-C(2))-methyltransferase (EC 2.1.1.192) 0.22 GFF5080 DNA recombination-dependent growth factor RdgC low > 127
Castellaniella sp019104865 MT123 0.49 ABCV34_RS02610 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN 0.28 ABCV34_RS04480 recombination-associated protein RdgC — —

Not shown: 32 genomes with orthologs for PP_0850 only; 0 genomes with orthologs for PP_1702 only