Conservation of cofitness between PP_0949 and PP_0951 in Pseudomonas putida KT2440

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0949 putative ATP-binding protein UPF0042 1.0 PP_0951 Ribosome hibernation promoting factor 0.34 17
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.81 PfGW456L13_5015 Ribosome hibernation protein YhbH low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_07050 glmZ(sRNA)-inactivating NTPase 0.81 AO356_07040 hypothetical protein 0.34 58
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.81 Pf6N2E2_3268 Ribosome hibernation protein YhbH 0.22 82
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.81 Pf1N1B4_1081 Ribosome hibernation protein YhbH — —
Pseudomonas sp. RS175 0.90 PFR28_00170 RNase adapter protein RapZ 0.80 PFR28_00172 Ribosome hibernation promoting factor low > 88
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_05195 glmZ(sRNA)-inactivating NTPase 0.80 AO353_05185 hypothetical protein low > 101
Pseudomonas simiae WCS417 0.89 PS417_04330 glmZ(sRNA)-inactivating NTPase 0.83 PS417_04340 ribosome hibernation promoting factor HPF — —
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS04385 RNase adapter RapZ 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas fluorescens SBW25 0.89 PFLU_RS04385 RNase adapter RapZ 0.70 PFLU_RS04395 ribosome-associated translation inhibitor RaiA low > 109
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.78 Psyr_4148 sigma 54 modulation protein / SSU ribosomal protein S30P low > 86
Pseudomonas sp. S08-1 0.85 OH686_08560 RNase adapter protein RapZ 0.78 OH686_08550 Ribosome hibernation promoting factor Hpf low > 80
Pseudomonas stutzeri RCH2 0.84 Psest_3316 Predicted P-loop-containing kinase 0.66 Psest_3314 ribosomal subunit interface protein low > 67
Marinobacter adhaerens HP15 0.55 HP15_2445 protein yhbJ 0.62 HP15_2443 sigma 54 modulation protein/ribosomal protein S30EA low > 73
Alteromonas macleodii MIT1002 0.48 MIT1002_00824 glmZ(sRNA)-inactivating NTPase 0.60 MIT1002_00826 Ribosome hibernation promoting factor low > 70
Serratia liquefaciens MT49 0.48 IAI46_22485 RNase adapter RapZ 0.55 IAI46_22475 ribosome hibernation promoting factor low > 86
Rahnella sp. WP5 0.47 EX31_RS12385 RNase adapter RapZ 0.58 EX31_RS12395 ribosome hibernation promoting factor low > 89
Escherichia coli BL21 0.47 ECD_03070 adaptor protein for GlmZ/GlmY sRNA decay, glucosamine-6-phosphate-regulated; NTPase 0.53 ECD_03068 ribosome hibernation promoting factor HPF; stabilizes 100S dimers low > 60
Enterobacter asburiae PDN3 0.47 EX28DRAFT_3259 Predicted P-loop-containing kinase 0.52 EX28DRAFT_3257 ribosomal subunit interface protein low > 76
Escherichia coli ECRC98 0.47 JDDGAC_21550 rapZ RNase adapter RapZ 0.53 JDDGAC_21560 Ribosome hibernation promoting factor — —
Escherichia coli ECRC102 0.47 NIAGMN_15685 rapZ RNase adapter RapZ 0.53 NIAGMN_15695 Ribosome hibernation promoting factor — —
Escherichia coli ECRC99 0.47 KEDOAH_10225 rapZ RNase adapter RapZ 0.53 KEDOAH_10215 Ribosome hibernation promoting factor — —
Escherichia coli BW25113 0.47 b3205 yhbJ hypothetical protein (NCBI) 0.53 b3203 yhbH predicted ribosome-associated, sigma 54 modulation protein (NCBI) 0.28 47
Escherichia coli ECRC101 0.47 OKFHMN_17925 rapZ RNase adapter RapZ 0.53 OKFHMN_17935 Ribosome hibernation promoting factor — —
Pectobacterium carotovorum WPP14 0.47 HER17_RS20075 RNase adapter RapZ 0.56 HER17_RS20065 ribosome hibernation promoting factor low > 75
Escherichia coli ECOR27 0.47 NOLOHH_09725 rapZ RNase adapter RapZ 0.53 NOLOHH_09735 Ribosome hibernation promoting factor low > 57
Escherichia coli HS(pFamp)R (ATCC 700891) 0.47 OHPLBJKB_00495 RNase adapter protein RapZ 0.53 OHPLBJKB_00497 Ribosome hibernation promoting factor low > 73
Escherichia coli ECRC101 0.47 MCAODC_08445 rapZ RNase adapter RapZ 0.53 MCAODC_08455 Ribosome hibernation promoting factor — —
Escherichia coli ECOR38 0.47 HEPCGN_16800 rapZ RNase adapter RapZ 0.53 HEPCGN_16810 Ribosome hibernation promoting factor 0.92 10
Escherichia fergusonii Becca 0.47 EFB2_00618 RNase adapter protein RapZ 0.53 EFB2_00620 Ribosome hibernation promoting factor low > 86
Escherichia coli Nissle 1917 0.47 ECOLIN_RS18440 RNase adapter RapZ 0.53 ECOLIN_RS18430 ribosome hibernation promoting factor low > 52
Escherichia coli ECRC62 0.47 BNILDI_01810 rapZ RNase adapter RapZ 0.53 BNILDI_01800 Ribosome hibernation promoting factor — —
Pantoea sp. MT58 0.47 IAI47_17200 RNase adapter RapZ 0.53 IAI47_17190 ribosome hibernation promoting factor low > 76
Dickeya dianthicola 67-19 0.47 HGI48_RS01430 RNase adapter RapZ 0.51 HGI48_RS01440 ribosome hibernation promoting factor low > 71
Dickeya dadantii 3937 0.47 DDA3937_RS01515 RNase adapter RapZ 0.51 DDA3937_RS01525 ribosome hibernation promoting factor low > 74
Enterobacter sp. TBS_079 0.47 MPMX20_04111 RNase adapter protein RapZ 0.51 MPMX20_04109 Ribosome hibernation promoting factor low > 85
Dickeya dianthicola ME23 0.47 DZA65_RS01495 RNase adapter RapZ 0.51 DZA65_RS01505 ribosome hibernation promoting factor low > 75
Klebsiella michiganensis M5al 0.47 BWI76_RS25280 RNase adaptor protein RapZ 0.51 BWI76_RS25270 ribosome hibernation promoting factor low > 92
Erwinia tracheiphila SCR3 0.47 LU632_RS21295 rapZ RNase adapter RapZ 0.53 LU632_RS21285 hpf ribosome hibernation promoting factor low > 74
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.47 GFF2949 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.51 GFF2947 Ribosome hibernation protein YhbH low > 78
Shewanella loihica PV-4 0.47 Shew_3314 hypothetical protein (RefSeq) 0.63 Shew_3312 sigma 54 modulation protein/ribosomal protein S30EA (RefSeq) — —
Shewanella amazonensis SB2B 0.46 Sama_3091 hypothetical protein (RefSeq) 0.60 Sama_3089 ribosomal subunit interface protein (RefSeq) low > 62
Vibrio cholerae E7946 ATCC 55056 0.46 CSW01_12830 RNase adaptor protein RapZ 0.51 CSW01_12820 ribosome hibernation promoting factor low > 62
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase 0.41 BPHYT_RS02900 ribosome hibernation promoting factor 0.34 104
Shewanella oneidensis MR-1 0.46 SO3964 conserved hypothetical protein (NCBI ptt file) 0.58 SO3962 yfiA-3 ribosomal subunit interface protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.46 Shewana3_0669 hypothetical protein (RefSeq) 0.59 Shewana3_0671 sigma 54 modulation protein / SSU ribosomal protein S30P (RefSeq) low > 73
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS01735 RNase adapter RapZ 0.39 QEN71_RS01750 ribosome-associated translation inhibitor RaiA 0.56 12
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_01931 UPF0042 nucleotide-binding protein 0.40 H281DRAFT_01928 sigma 54 modulation protein /SSU ribosomal protein S30P low > 103
Rhodanobacter sp. FW510-T8 0.45 OKGIIK_02250 rapZ RNase adapter RapZ 0.39 OKGIIK_02260 raiA ribosomal subunit interface protein 0.77 48
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS19800 RNase adapter RapZ 0.39 ABZR86_RS19810 ribosome-associated translation inhibitor RaiA low > 74
Ralstonia solanacearum UW163 0.45 UW163_RS02435 RNase adapter RapZ 0.43 UW163_RS02415 ribosomal subunit interface protein — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS11145 RNase adapter RapZ 0.43 RALBFv3_RS11165 ribosomal subunit interface protein low > 76
Ralstonia solanacearum GMI1000 0.44 RS_RS01995 RNase adaptor protein RapZ 0.43 RS_RS02015 ribosomal subunit interface protein low > 80
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22155 RNase adapter RapZ 0.44 RPSI07_RS22135 ribosomal subunit interface protein low > 81
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS07035 RNase adapter RapZ 0.41 ABZR87_RS07055 ribosome-associated translation inhibitor RaiA 0.54 39
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12560 RNase adapter RapZ 0.39 LRK55_RS12570 ribosome-associated translation inhibitor RaiA low > 63
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS12860 RNase adapter RapZ 0.39 LRK54_RS12870 ribosome-associated translation inhibitor RaiA low > 59
Paraburkholderia graminis OAS925 0.44 ABIE53_000714 UPF0042 nucleotide-binding protein 0.41 ABIE53_000717 putative sigma-54 modulation protein low > 113
Dechlorosoma suillum PS 0.44 Dsui_0990 putative P-loop-containing kinase 0.52 Dsui_0703 ribosomal subunit interface protein 0.57 38
Lysobacter sp. OAE881 0.44 ABIE51_RS15975 RNase adapter RapZ 0.41 ABIE51_RS15960 ribosome-associated translation inhibitor RaiA low > 62
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_2077 Predicted P-loop-containing kinase 0.59 B158DRAFT_2079 ribosomal subunit interface protein low > 40
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02060 nucleotide-binding protein 0.46 RR42_RS02080 ribosome hibernation promoting factor low > 128
Acinetobacter radioresistens SK82 0.41 MPMX26_00547 RNase adapter protein RapZ 0.29 MPMX26_02591 Ribosome hibernation promoting factor — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.1658.1 hypothetical protein 0.38 Xcc-8004.1661.1 Ribosome hibernation protein YhbH low > 74
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.46 Ac3H11_681 Ribosome hibernation protein YhbH low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.46 GFF2612 Ribosome hibernation protein YhbH low > 90
Variovorax sp. SCN45 0.39 GFF2356 RNase adapter protein RapZ 0.45 GFF7293 Ribosome hibernation promoting factor Hpf low > 127
Variovorax sp. OAS795 0.39 ABID97_RS23710 RNase adapter RapZ 0.45 ABID97_RS04490 ribosome-associated translation inhibitor RaiA low > 91
Castellaniella sp019104865 MT123 0.39 ABCV34_RS14330 RNase adapter RapZ 0.43 ABCV34_RS14345 ribosome-associated translation inhibitor RaiA 0.45 16

Not shown: 13 genomes with orthologs for PP_0949 only; 5 genomes with orthologs for PP_0951 only