Conservation of cofitness between PP_0949 and PP_0406 in Pseudomonas putida KT2440

49 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0949 putative ATP-binding protein UPF0042 1.0 PP_0406 Nucleotidyltransferase family protein 0.38 7
Pseudomonas fluorescens GW456-L13 0.92 PfGW456L13_5017 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.76 PfGW456L13_1205 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) low > 87
Pseudomonas fluorescens FW300-N2C3 0.92 AO356_07050 glmZ(sRNA)-inactivating NTPase 0.75 AO356_14360 mannose-1-phosphate guanylyltransferase 0.42 14
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3270 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.76 Pf6N2E2_4810 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) 0.23 57
Pseudomonas fluorescens FW300-N1B4 0.90 Pf1N1B4_1083 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.74 Pf1N1B4_2533 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Pseudomonas sp. RS175 0.90 PFR28_00170 RNase adapter protein RapZ 0.75 PFR28_04059 N-acetylmuramate alpha-1-phosphate uridylyltransferase 0.44 41
Pseudomonas fluorescens FW300-N2E3 0.90 AO353_05195 glmZ(sRNA)-inactivating NTPase 0.76 AO353_07290 mannose-1-phosphate guanylyltransferase 0.68 2
Pseudomonas simiae WCS417 0.89 PS417_04330 glmZ(sRNA)-inactivating NTPase 0.73 PS417_25785 mannose-1-phosphate guanylyltransferase — —
Pseudomonas fluorescens SBW25 0.89 PFLU_RS04385 RNase adapter RapZ 0.73 PFLU_RS27440 nucleotidyltransferase family protein 0.90 2
Pseudomonas fluorescens SBW25-INTG 0.89 PFLU_RS04385 RNase adapter RapZ 0.73 PFLU_RS27440 nucleotidyltransferase family protein 0.67 1
Pseudomonas syringae pv. syringae B728a ΔmexB 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.73 Psyr_4622 Nucleotidyl transferase low > 86
Pseudomonas syringae pv. syringae B728a 0.87 Psyr_4150 Uncharacterized P-loop ATPase protein UPF0042 0.73 Psyr_4622 Nucleotidyl transferase low > 86
Pseudomonas sp. S08-1 0.85 OH686_08560 RNase adapter protein RapZ 0.75 OH686_15065 Nucleotidyl transferase putative low > 80
Pseudomonas stutzeri RCH2 0.84 Psest_3316 Predicted P-loop-containing kinase 0.74 Psest_3663 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) — —
Marinobacter adhaerens HP15 0.55 HP15_2445 protein yhbJ 0.55 HP15_3283 nucleotidyltransferase family protein — —
Shewanella loihica PV-4 0.47 Shew_3314 hypothetical protein (RefSeq) 0.52 Shew_0884 nucleotidyl transferase (RefSeq) — —
Shewanella amazonensis SB2B 0.46 Sama_3091 hypothetical protein (RefSeq) 0.51 Sama_2814 nucleotidyl transferase (RefSeq) low > 62
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02885 glmZ(sRNA)-inactivating NTPase 0.40 BPHYT_RS03280 mannose-1-phosphate guanylyltransferase low > 109
Shewanella oneidensis MR-1 0.46 SO3964 conserved hypothetical protein (NCBI ptt file) 0.48 SO3634 nucleotidyltransferase family protein (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.46 Shewana3_0669 hypothetical protein (RefSeq) 0.49 Shewana3_3204 nucleotidyl transferase (RefSeq) 0.43 9
Paraburkholderia sabiae LMG 24235 0.46 QEN71_RS01735 RNase adapter RapZ 0.41 QEN71_RS02105 nucleotidyltransferase family protein low > 153
Paraburkholderia bryophila 376MFSha3.1 0.45 H281DRAFT_01931 UPF0042 nucleotide-binding protein 0.40 H281DRAFT_04635 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) low > 103
Dyella japonica UNC79MFTsu3.2 0.45 ABZR86_RS19800 RNase adapter RapZ 0.44 ABZR86_RS09505 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU low > 74
Ralstonia solanacearum UW163 0.45 UW163_RS02435 RNase adapter RapZ 0.46 UW163_RS01865 nucleotidyltransferase family protein — —
Ralstonia solanacearum IBSBF1503 0.45 RALBFv3_RS11145 RNase adapter RapZ 0.46 RALBFv3_RS11720 nucleotidyltransferase family protein low > 76
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22155 RNase adapter RapZ 0.46 RPSI07_RS21495 nucleotidyltransferase family protein low > 81
Ralstonia solanacearum GMI1000 0.44 RS_RS01995 RNase adaptor protein RapZ 0.47 RS_RS02545 nucleotidyltransferase family protein low > 80
Ralstonia sp. UNC404CL21Col 0.44 ABZR87_RS07035 RNase adapter RapZ 0.43 ABZR87_RS07675 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU low > 80
Rhodanobacter denitrificans FW104-10B01 0.44 LRK54_RS12860 RNase adapter RapZ 0.50 LRK54_RS03110 nucleotidyltransferase family protein 0.84 38
Rhodanobacter denitrificans MT42 0.44 LRK55_RS12560 RNase adapter RapZ 0.51 LRK55_RS02860 nucleotidyltransferase family protein 0.54 37
Lysobacter sp. OAE881 0.44 ABIE51_RS15975 RNase adapter RapZ 0.53 ABIE51_RS15870 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU 0.61 21
Paraburkholderia graminis OAS925 0.44 ABIE53_000714 UPF0042 nucleotide-binding protein 0.40 ABIE53_000795 MurNAc alpha-1-phosphate uridylyltransferase low > 113
Dechlorosoma suillum PS 0.44 Dsui_0990 putative P-loop-containing kinase 0.49 Dsui_1589 Nucleoside-diphosphate-sugar pyrophosphorylase family protein 0.66 4
Kangiella aquimarina DSM 16071 0.44 B158DRAFT_2077 Predicted P-loop-containing kinase 0.49 B158DRAFT_0793 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon) 0.85 10
Cupriavidus basilensis FW507-4G11 0.42 RR42_RS02060 nucleotide-binding protein 0.43 RR42_RS02750 mannose-1-phosphate guanylyltransferase 0.40 58
Acinetobacter radioresistens SK82 0.41 MPMX26_00547 RNase adapter protein RapZ 0.50 MPMX26_01213 N-acetylmuramate alpha-1-phosphate uridylyltransferase 0.77 8
Herbaspirillum seropedicae SmR1 0.40 HSERO_RS19535 nucleotide-binding protein 0.43 HSERO_RS03515 mannose-1-phosphate guanylyltransferase — —
Xanthomonas campestris pv. campestris strain 8004 0.40 Xcc-8004.1658.1 hypothetical protein 0.52 Xcc-8004.1680.1 FIG006611: nucleotidyltransferase 0.71 34
Acidovorax sp. GW101-3H11 0.40 Ac3H11_3459 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.37 Ac3H11_651 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.39 GFF828 Hypothetical ATP-binding protein UPF0042, contains P-loop 0.36 GFF2486 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) — —
Variovorax sp. SCN45 0.39 GFF2356 RNase adapter protein RapZ 0.34 GFF7178 Glucose-1-phosphate thymidylyltransferase (EC 2.7.7.24) low > 127
Variovorax sp. OAS795 0.39 ABID97_RS23710 RNase adapter RapZ 0.34 ABID97_RS02455 nucleotidyltransferase family protein low > 91
Castellaniella sp019104865 MT123 0.39 ABCV34_RS14330 RNase adapter RapZ 0.50 ABCV34_RS09510 N-acetylmuramate alpha-1-phosphate uridylyltransferase MurU low > 48
Rhodospirillum rubrum S1H 0.37 Rru_A3448 Uncharacterized P-loop ATPase protein UPF0042 (NCBI) 0.28 Rru_A3436 Nucleotidyl transferase (NCBI) — —
Phaeobacter inhibens DSM 17395 0.35 PGA1_c01180 Predicted P-loop-containing kinase 0.22 PGA1_c35330 nucleotidyl transferase-like protein low > 62
Azospirillum sp. SherDot2 0.34 MPMX19_02622 Nucleotide-binding protein 0.29 MPMX19_02724 N-acetylmuramate alpha-1-phosphate uridylyltransferase low > 112
Magnetospirillum magneticum AMB-1 0.33 AMB_RS22235 RNase adaptor protein RapZ 0.30 AMB_RS21470 nucleotidyltransferase family protein — —
Azospirillum brasilense Sp245 0.33 AZOBR_RS30485 nucleotide-binding protein 0.30 AZOBR_RS00585 mannose-1-phosphate guanylyltransferase 0.49 27
Dinoroseobacter shibae DFL-12 0.32 Dshi_0209 hypothetical protein (RefSeq) 0.25 Dshi_3436 Nucleotidyl transferase (RefSeq) low > 64
Sphingomonas koreensis DSMZ 15582 0.28 Ga0059261_0917 Predicted P-loop-containing kinase 0.27 Ga0059261_4025 Nucleotidyl transferase low > 68

Not shown: 33 genomes with orthologs for PP_0949 only; 12 genomes with orthologs for PP_0406 only