Conservation of cofitness between PP_0937 and PP_0066 in Pseudomonas putida KT2440

68 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas putida KT2440 1.0 PP_0937 endoribonuclease G (RNAse G) 1.0 PP_0066 Ribosomal RNA small subunit methyltransferase B 0.56 4
Pseudomonas simiae WCS417 0.92 PS417_04270 ribonuclease G 0.83 PS417_00085 16S rRNA methyltransferase low > 88
Pseudomonas fluorescens FW300-N2E3 0.91 AO353_05230 ribonuclease G 0.83 AO353_10630 16S rRNA methyltransferase low > 101
Pseudomonas fluorescens FW300-N2C3 0.91 AO356_07110 ribonuclease G 0.84 AO356_11275 16S rRNA methyltransferase 0.31 16
Pseudomonas fluorescens FW300-N2E2 0.91 Pf6N2E2_3283 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.84 Pf6N2E2_4121 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 103
Pseudomonas fluorescens SBW25-INTG 0.91 PFLU_RS04325 ribonuclease G 0.83 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens SBW25 0.91 PFLU_RS04325 ribonuclease G 0.83 PFLU_RS00080 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 109
Pseudomonas fluorescens GW456-L13 0.91 PfGW456L13_5029 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.83 PfGW456L13_652 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas sp. RS175 0.91 PFR28_00158 Ribonuclease G 0.83 PFR28_04663 Ribosomal RNA small subunit methyltransferase B low > 88
Pseudomonas fluorescens FW300-N1B4 0.91 Pf1N1B4_1095 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.83 Pf1N1B4_1914 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 87
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_4159 RNAse G 0.82 Psyr_0017 16S rRNA m(5)C-967 methyltransferase 0.30 51
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_4159 RNAse G 0.82 Psyr_0017 16S rRNA m(5)C-967 methyltransferase low > 86
Pseudomonas sp. S08-1 0.89 OH686_08595 Ribonuclease G 0.73 OH686_12525 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 80
Pseudomonas stutzeri RCH2 0.89 Psest_3323 ribonuclease, Rne/Rng family 0.80 Psest_0021 ribosomal RNA small subunit methyltransferase RsmB low > 67
Marinobacter adhaerens HP15 0.68 HP15_2451 ribonuclease, Rne/Rng family 0.42 HP15_3742 Fmu, rRNA SAM-dependent methyltransferase low > 73
Kangiella aquimarina DSM 16071 0.65 B158DRAFT_2069 ribonuclease, Rne/Rng family 0.38 B158DRAFT_0396 ribosomal RNA small subunit methyltransferase RsmB low > 40
Rhodanobacter sp. FW510-T8 0.61 OKGIIK_10290 rng ribonuclease G 0.37 OKGIIK_13790 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Alteromonas macleodii MIT1002 0.59 MIT1002_00224 Ribonuclease G 0.36 MIT1002_00018 Ribosomal RNA small subunit methyltransferase B low > 70
Paraburkholderia sabiae LMG 24235 0.59 QEN71_RS24430 ribonuclease G 0.28 QEN71_RS00175 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 153
Dyella japonica UNC79MFTsu3.2 0.59 ABZR86_RS21730 ribonuclease G 0.38 ABZR86_RS13890 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Lysobacter sp. OAE881 0.59 ABIE51_RS06785 ribonuclease G 0.37 ABIE51_RS02255 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Paraburkholderia bryophila 376MFSha3.1 0.59 H281DRAFT_04515 RNAse G 0.29 H281DRAFT_02237 16S rRNA (cytosine967-C5)-methyltransferase low > 103
Paraburkholderia graminis OAS925 0.59 ABIE53_001538 ribonuclease G 0.29 ABIE53_000392 16S rRNA (cytosine967-C5)-methyltransferase low > 113
Xanthomonas campestris pv. campestris strain 8004 0.59 Xcc-8004.1880.1 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.32 Xcc-8004.4741.1 hypothetical protein low > 74
Burkholderia phytofirmans PsJN 0.59 BPHYT_RS06375 ribonuclease 0.30 BPHYT_RS01475 16S rRNA methyltransferase low > 109
Dechlorosoma suillum PS 0.58 Dsui_0434 ribonuclease, Rne/Rng family 0.33 Dsui_0812 ribosomal RNA small subunit methyltransferase RsmB 0.46 4
Vibrio cholerae E7946 ATCC 55056 0.58 CSW01_02205 ribonuclease E/G 0.46 CSW01_00225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 62
Rhodanobacter denitrificans MT42 0.58 LRK55_RS03155 ribonuclease G 0.34 LRK55_RS09765 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 63
Rhodanobacter denitrificans FW104-10B01 0.58 LRK54_RS03405 ribonuclease G 0.35 LRK54_RS10125 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 59
Klebsiella michiganensis M5al 0.58 BWI76_RS25480 ribonuclease E/G 0.44 BWI76_RS25680 16S rRNA m5C967 methyltransferase low > 92
Dickeya dadantii 3937 0.57 DDA3937_RS01450 ribonuclease G 0.44 DDA3937_RS19135 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Acinetobacter radioresistens SK82 0.57 MPMX26_00646 Ribonuclease G 0.37 MPMX26_03021 Ribosomal RNA small subunit methyltransferase B low > 36
Dickeya dianthicola 67-19 0.57 HGI48_RS01370 ribonuclease G 0.43 HGI48_RS19225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 71
Dickeya dianthicola ME23 0.57 DZA65_RS01430 ribonuclease G 0.44 DZA65_RS20350 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.57 GFF2138 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.42 GFF2390 16S rRNA (cytosine(967)-C(5))-methyltransferase (EC 2.1.1.176) ## SSU rRNA m5C967 low > 78
Rahnella sp. WP5 0.57 EX31_RS12255 ribonuclease G 0.46 EX31_RS15985 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 89
Enterobacter asburiae PDN3 0.57 EX28DRAFT_3297 ribonuclease, Rne/Rng family 0.43 EX28DRAFT_0039 16S rRNA (cytosine(967)-C(5))-methyltransferase low > 76
Enterobacter sp. TBS_079 0.57 MPMX20_04153 Ribonuclease G 0.44 MPMX20_04196 Ribosomal RNA small subunit methyltransferase B low > 85
Pantoea sp. MT58 0.57 IAI47_02455 ribonuclease G 0.44 IAI47_02280 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB 0.36 55
Escherichia coli ECOR38 0.57 HEPCGN_16610 rng ribonuclease G 0.44 HEPCGN_16350 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 85
Escherichia coli ECRC102 0.57 NIAGMN_15505 rng ribonuclease G 0.43 NIAGMN_15290 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC101 0.57 OKFHMN_17745 rng ribonuclease G 0.43 OKFHMN_17520 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia fergusonii Becca 0.57 EFB2_00584 Ribonuclease G 0.43 EFB2_00535 Ribosomal RNA small subunit methyltransferase B low > 86
Pectobacterium carotovorum WPP14 0.57 HER17_RS20150 ribonuclease G 0.44 HER17_RS02215 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.57 OHPLBJKB_00458 Ribonuclease G 0.44 OHPLBJKB_00415 Ribosomal RNA small subunit methyltransferase B low > 73
Escherichia coli ECRC101 0.57 MCAODC_08265 rng ribonuclease G 0.43 MCAODC_08050 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli Nissle 1917 0.57 ECOLIN_RS18605 ribonuclease G 0.43 ECOLIN_RS18875 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 52
Escherichia coli BW25113 0.57 b3247 cafA bundles of cytoplasmic filaments (VIMSS) 0.44 b3289 rsmB 16S rRNA m5C967 methyltransferase, S-adenosyl-L-methionine-dependent (NCBI) low > 76
Escherichia coli ECRC62 0.57 BNILDI_01990 rng ribonuclease G 0.44 BNILDI_02200 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECRC99 0.57 KEDOAH_10405 rng ribonuclease G 0.43 KEDOAH_10620 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Escherichia coli ECOR27 0.57 NOLOHH_09530 rng ribonuclease G 0.44 NOLOHH_09320 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 57
Escherichia coli BL21 0.57 ECD_03106 ribonuclease G 0.44 ECD_03139 16S rRNA m(5)C967 methyltransferase, SAM-dependent low > 60
Escherichia coli ECRC98 0.57 JDDGAC_21370 rng ribonuclease G 0.43 JDDGAC_21150 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Shewanella sp. ANA-3 0.57 Shewana3_3644 ribonuclease G (RefSeq) 0.41 Shewana3_0033 sun protein (RefSeq) 0.54 3
Serratia liquefaciens MT49 0.56 IAI46_22700 ribonuclease G 0.46 IAI46_23275 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 86
Shewanella oneidensis MR-1 0.56 SO4094 cafA ribonuclease G (NCBI ptt file) 0.40 SO0030 sun sun protein (NCBI ptt file) 0.53 22
Erwinia tracheiphila SCR3 0.56 LU632_RS21430 rng ribonuclease G 0.44 LU632_RS22480 rsmB 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 74
Shewanella loihica PV-4 0.56 Shew_0407 ribonuclease G (RefSeq) 0.40 Shew_3738 sun protein (RefSeq) 0.45 36
Shewanella amazonensis SB2B 0.56 Sama_0471 ribonuclease G (RefSeq) 0.41 Sama_0041 sun protein (RefSeq) 0.33 30
Cupriavidus basilensis FW507-4G11 0.55 RR42_RS04700 ribonuclease G 0.27 RR42_RS20450 16S rRNA methyltransferase low > 128
Castellaniella sp019104865 MT123 0.55 ABCV34_RS02480 ribonuclease G 0.32 ABCV34_RS14225 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 48
Ralstonia solanacearum PSI07 0.55 RPSI07_RS13650 ribonuclease G 0.33 RPSI07_RS23575 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia solanacearum GMI1000 0.55 RS_RS11025 ribonuclease G 0.31 RS_RS00375 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia sp. UNC404CL21Col 0.55 ABZR87_RS15440 ribonuclease G 0.33 ABZR87_RS04950 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 80
Ralstonia solanacearum UW163 0.55 UW163_RS10095 ribonuclease G 0.32 UW163_RS03790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Ralstonia solanacearum IBSBF1503 0.55 RALBFv3_RS03575 ribonuclease G 0.32 RALBFv3_RS09790 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB — —
Acidovorax sp. GW101-3H11 0.54 Ac3H11_2416 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.25 Ac3H11_4461 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 79
Hydrogenophaga sp. GW460-11-11-14-LB1 0.52 GFF4531 Cytoplasmic axial filament protein CafA and Ribonuclease G (EC 3.1.4.-) 0.28 GFF1789 Ribosomal RNA small subunit methyltransferase B (EC 2.1.1.-) low > 90
Fusobacterium nucleatum SB010 0.25 HUW76_02260 ribonuclease E/G 0.17 HUW76_07955 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB low > 35

Not shown: 4 genomes with orthologs for PP_0937 only; 18 genomes with orthologs for PP_0066 only