| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Escherichia coli ECOR27 | 1.0 | NOLOHH_13120 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 1.0 | NOLOHH_12120 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | 0.64 | 13 |
| Escherichia coli BL21 | 1.00 | ECD_02456 | | putative 4Fe-4S cluster-containing protein | 0.99 | ECD_02630 | | 23S rRNA m(5)U1939 methyltransferase, SAM-dependent | low | > 61 |
| Escherichia coli ECRC62 | 1.00 | BNILDI_11920 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 0.99 | BNILDI_10625 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Escherichia coli BW25113 | 1.00 | b2562 | yfhL | predicted 4Fe-4S cluster-containing protein (NCBI) | 0.99 | b2785 | rumA | 23S rRNA (uracil-5-)-methyltransferase (NCBI) | low | > 76 |
| Escherichia coli ECRC100 | 0.99 | OKFHMN_21445 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 0.99 | OKFHMN_20245 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Escherichia coli ECRC99 | 0.99 | KEDOAH_06775 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 0.99 | KEDOAH_07885 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Escherichia coli ECOR38 | 0.99 | HEPCGN_20590 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 0.98 | HEPCGN_19495 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 87 |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.99 | OHPLBJKB_01145 | | Ferredoxin YfhL | 0.99 | OHPLBJKB_00946 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 73 |
| Escherichia coli ECRC98 | 0.99 | JDDGAC_25110 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 0.99 | JDDGAC_23910 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Escherichia coli ECRC102 | 0.99 | NIAGMN_19215 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 0.99 | NIAGMN_18015 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Escherichia coli ECRC101 | 0.99 | MCAODC_11975 | yfhL | 4Fe-4S dicluster ferredoxin YfhL | 0.99 | MCAODC_10770 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 87 |
| Escherichia coli Nissle 1917 | 0.98 | ECOLIN_RS14495 | | 4Fe-4S dicluster ferredoxin YfhL | 0.99 | ECOLIN_RS15520 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Escherichia fergusonii Becca | 0.98 | EFB2_01334 | | Ferredoxin YfhL | 0.98 | EFB2_01132 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.97 | GFF2470 | | 4Fe-4S ferredoxin, iron-sulfur binding | 0.85 | GFF4838 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 78 |
| Enterobacter asburiae PDN3 | 0.96 | EX28DRAFT_0084 | | 4Fe-4S dicluster domain | 0.80 | EX28DRAFT_2865 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 76 |
| Enterobacter sp. TBS_079 | 0.94 | MPMX20_03433 | | Ferredoxin YfhL | 0.80 | MPMX20_03654 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 85 |
| Klebsiella michiganensis M5al | 0.93 | BWI76_RS21295 | | ferredoxin | 0.79 | BWI76_RS22810 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase | — | — |
| Serratia liquefaciens MT49 | 0.84 | IAI46_19525 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.64 | IAI46_03595 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 86 |
| Pectobacterium carotovorum WPP14 | 0.83 | HER17_RS05840 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.64 | HER17_RS04110 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Dickeya dadantii 3937 | 0.81 | DDA3937_RS15710 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.66 | DDA3937_RS17020 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 74 |
| Dickeya dianthicola 67-19 | 0.81 | HGI48_RS15795 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.66 | HGI48_RS17075 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 71 |
| Dickeya dianthicola ME23 | 0.80 | DZA65_RS16875 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.66 | DZA65_RS18150 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 75 |
| Rahnella sp. WP5 | 0.79 | EX31_RS21860 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.62 | EX31_RS07960 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 89 |
| Erwinia tracheiphila SCR3 | 0.78 | LU632_RS15360 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.60 | LU632_RS06345 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Pantoea sp. MT58 | 0.75 | IAI47_04905 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.64 | IAI47_04115 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 76 |
| Vibrio cholerae E7946 ATCC 55056 | 0.72 | CSW01_03745 | | ferredoxin | 0.46 | CSW01_12410 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 62 |
| Ralstonia solanacearum UW163 | 0.61 | UW163_RS02500 | | 4Fe-4S dicluster domain-containing protein | 0.30 | UW163_RS12710 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Ralstonia solanacearum PSI07 | 0.61 | RPSI07_RS22220 | | 4Fe-4S dicluster domain-containing protein | 0.30 | RPSI07_RS18130 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Cupriavidus basilensis FW507-4G11 | 0.61 | RR42_RS02000 | | ferredoxin | 0.31 | RR42_RS13170 | | 23S rRNA methyltransferase | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.61 | RALBFv3_RS11080 | | 4Fe-4S dicluster domain-containing protein | 0.30 | RALBFv3_RS15245 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Ralstonia sp. UNC404CL21Col | 0.60 | ABZR87_RS06970 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.31 | ABZR87_RS10885 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 80 |
| Dechlorosoma suillum PS | 0.60 | Dsui_1029 | | hypothetical protein | 0.32 | Dsui_1981 | | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Ralstonia solanacearum GMI1000 | 0.59 | RS_RS01930 | | 4Fe-4S dicluster domain-containing protein | 0.30 | RS_RS06055 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Shewanella amazonensis SB2B | 0.59 | Sama_1002 | | ferredoxin, 4Fe-4S (RefSeq) | 0.45 | Sama_1032 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 62 |
| Shewanella sp. ANA-3 | 0.58 | Shewana3_1067 | | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) | 0.44 | Shewana3_1110 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.58 | SO1251 | | ferredoxin, 4Fe-4S (NCBI ptt file) | 0.43 | SO3456 | | RNA methyltransferase, TrmA family (NCBI ptt file) | — | — |
| Shewanella loihica PV-4 | 0.58 | Shew_2785 | | 4Fe-4S ferredoxin iron-sulfur binding domain-containing protein (RefSeq) | 0.44 | Shew_1201 | rumA | 23S rRNA 5-methyluridine methyltransferase (RefSeq) | low | > 60 |
| Paraburkholderia sabiae LMG 24235 | 0.58 | QEN71_RS01675 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.29 | QEN71_RS22225 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 153 |
| Acidovorax sp. GW101-3H11 | 0.58 | Ac3H11_4828 | | Ferredoxin | 0.31 | Ac3H11_2847 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | low | > 79 |
| Herbaspirillum seropedicae SmR1 | 0.58 | HSERO_RS20685 | | ferredoxin | 0.31 | HSERO_RS14825 | | 23S rRNA methyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a | 0.57 | Psyr_4759 | | 4Fe-4S ferredoxin, iron-sulfur binding protein | 0.33 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | — | — |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.57 | Psyr_4759 | | 4Fe-4S ferredoxin, iron-sulfur binding protein | 0.33 | Psyr_3696 | | 23S rRNA m(5)U-1939 methyltransferase | — | — |
| Alteromonas macleodii MIT1002 | 0.57 | MIT1002_02343 | | putative ferredoxin-like protein | 0.32 | MIT1002_00793 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 70 |
| Pseudomonas sp. S08-1 | 0.55 | OH686_14145 | | Uncharacterized ferredoxin-like protein YfhL | 0.34 | OH686_18955 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 80 |
| Pseudomonas sp. RS175 | 0.55 | PFR28_04270 | | Ferredoxin | 0.33 | PFR28_03224 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Paraburkholderia bryophila 376MFSha3.1 | 0.55 | H281DRAFT_01943 | | Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) | 0.31 | H281DRAFT_00846 | | 23S rRNA m(5)U-1939 methyltransferase | low | > 103 |
| Acinetobacter radioresistens SK82 | 0.55 | MPMX26_00739 | | Ferredoxin | 0.34 | MPMX26_00538 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 36 |
| Pseudomonas fluorescens FW300-N2C3 | 0.55 | AO356_13280 | | ferredoxin | 0.33 | AO356_19055 | | 23S rRNA methyltransferase | — | — |
| Pseudomonas putida KT2440 | 0.55 | PP_5124 | | putative 4Fe-4S cluster-containing protein | 0.31 | PP_1655 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Pseudomonas fluorescens FW300-N2E2 | 0.55 | Pf6N2E2_4571 | | 4Fe-4S ferredoxin, iron-sulfur binding | 0.32 | Pf6N2E2_5722 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | — | — |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS28510 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 109 |
| Pseudomonas simiae WCS417 | 0.55 | PS417_26865 | | ferredoxin | 0.34 | PS417_20155 | | 23S rRNA methyltransferase | — | — |
| Pseudomonas fluorescens GW456-L13 | 0.55 | PfGW456L13_980 | | 4Fe-4S ferredoxin, iron-sulfur binding | 0.31 | PfGW456L13_2033 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | — | — |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS28510 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.33 | PFLU_RS22100 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Pseudomonas fluorescens FW300-N1B4 | 0.55 | Pf1N1B4_2311 | | 4Fe-4S ferredoxin, iron-sulfur binding | 0.32 | Pf1N1B4_3507 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) ## LSU rRNA m(5)U1939 | — | — |
| Burkholderia phytofirmans PsJN | 0.55 | BPHYT_RS02825 | | ferredoxin | 0.31 | BPHYT_RS09125 | | 23S rRNA methyltransferase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.54 | AO353_08310 | | ferredoxin | 0.31 | AO353_02715 | | 23S rRNA methyltransferase | — | — |
| Kangiella aquimarina DSM 16071 | 0.54 | B158DRAFT_0772 | | Formate hydrogenlyase subunit 6/NADH:ubiquinone oxidoreductase 23 kD subunit (chain I) | 0.37 | B158DRAFT_2275 | | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Pseudomonas stutzeri RCH2 | 0.51 | Psest_0243 | | hypothetical protein | 0.37 | Psest_1639 | | 23S rRNA (uracil-5-)-methyltransferase RumA | low | > 67 |
| Variovorax sp. SCN45 | 0.50 | GFF2345 | | Uncharacterized ferredoxin-like protein YfhL | 0.28 | GFF2841 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase (EC 2.1.1.190) | low | > 127 |
| Rhodanobacter denitrificans FW104-10B01 | 0.49 | LRK54_RS13355 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.34 | LRK54_RS17000 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 59 |
| Lysobacter sp. OAE881 | 0.48 | ABIE51_RS15110 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.35 | ABIE51_RS13830 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Rhodanobacter sp. FW510-T8 | 0.48 | OKGIIK_02595 | nuoI | Ferredoxin | 0.34 | OKGIIK_07840 | rlmD | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 52 |
| Rhodanobacter denitrificans MT42 | 0.47 | LRK55_RS13095 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.34 | LRK55_RS16715 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 63 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.47 | Xcc-8004.2157.1 | | 4Fe-4S ferredoxin, iron-sulfur binding | 0.35 | Xcc-8004.3669.1 | | 23S rRNA (Uracil-5-) -methyltransferase RumA (EC 2.1.1.-) | — | — |
| Rhodopseudomonas palustris CGA009 | 0.46 | TX73_003430 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.15 | TX73_004885 | | methyltransferase | low | > 86 |
| Dyella japonica UNC79MFTsu3.2 | 0.46 | ABZR86_RS20005 | | YfhL family 4Fe-4S dicluster ferredoxin | 0.34 | ABZR86_RS07120 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | low | > 74 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.41 | CA264_00950 | | ferredoxin | 0.19 | CA264_02005 | | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.39 | Echvi_2528 | | hypothetical protein | 0.18 | Echvi_0172 | | 23S rRNA (uracil-5-)-methyltransferase RumA | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.37 | CA265_RS03585 | | ferredoxin | 0.19 | CA265_RS25340 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.35 | ABZR88_RS06810 | | 4Fe-4S dicluster domain-containing protein | 0.19 | ABZR88_RS21250 | | 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD | — | — |
Not shown: 1 genomes with orthologs for NOLOHH_13120 only; 26 genomes with orthologs for NOLOHH_12120 only