Conservation of cofitness between HSERO_RS15750 and HSERO_RS21530 in Herbaspirillum seropedicae SmR1

55 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS15750 lysine transporter LysE 1.0 HSERO_RS21530 cytochrome C550 0.49 4
Ralstonia sp. UNC404CL21Col 0.50 ABZR87_RS07110 LysE family translocator 0.54 ABZR87_RS06610 D-alanyl-D-alanine carboxypeptidase family protein low > 80
Paraburkholderia sabiae LMG 24235 0.48 QEN71_RS01795 LysE family translocator 0.55 QEN71_RS01300 D-alanyl-D-alanine carboxypeptidase family protein low > 153
Paraburkholderia bryophila 376MFSha3.1 0.46 H281DRAFT_01919 Threonine/homoserine/homoserine lactone efflux protein 0.55 H281DRAFT_02054 penicillin-binding protein 6. Serine peptidase. MEROPS family S11 low > 103
Burkholderia phytofirmans PsJN 0.46 BPHYT_RS02945 lysine transporter LysE 0.55 BPHYT_RS02415 cytochrome C550 low > 109
Paraburkholderia graminis OAS925 0.46 ABIE53_000726 threonine/homoserine/homoserine lactone efflux protein 0.55 ABIE53_000626 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) low > 113
Ralstonia solanacearum PSI07 0.43 RPSI07_RS22080 LysE family translocator 0.55 RPSI07_RS22545 D-alanyl-D-alanine carboxypeptidase low > 81
Ralstonia solanacearum GMI1000 0.43 RS_RS02070 LysE family translocator 0.54 RS_RS01610 D-alanyl-D-alanine carboxypeptidase low > 80
Ralstonia solanacearum IBSBF1503 0.42 RALBFv3_RS11220 LysE family translocator 0.54 RALBFv3_RS10770 D-alanyl-D-alanine carboxypeptidase low > 76
Magnetospirillum magneticum AMB-1 0.38 AMB_RS11450 LysE family translocator 0.30 AMB_RS12315 D-alanyl-D-alanine carboxypeptidase — —
Azospirillum sp. SherDot2 0.34 MPMX19_00458 Leucine efflux protein 0.34 MPMX19_01465 D-alanyl-D-alanine carboxypeptidase DacC — —
Pseudomonas stutzeri RCH2 0.34 Psest_1447 Putative threonine efflux protein 0.45 Psest_0516 D-alanyl-D-alanine carboxypeptidase low > 67
Dickeya dadantii 3937 0.34 DDA3937_RS03260 LysE family translocator 0.37 DDA3937_RS09420 serine hydrolase low > 74
Azospirillum brasilense Sp245 0.34 AZOBR_RS11980 transporter 0.35 AZOBR_RS08775 D-alanyl-D-alanine carboxypeptidase — —
Hydrogenophaga sp. GW460-11-11-14-LB1 0.33 GFF3109 Lysine exporter protein (LYSE/YGGA) 0.46 GFF1806 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 90
Cupriavidus basilensis FW507-4G11 0.33 RR42_RS26520 threonine transporter RhtB 0.58 RR42_RS01680 cytochrome C550 low > 128
Ralstonia solanacearum UW163 0.32 UW163_RS03800 LysE family translocator 0.54 UW163_RS02810 D-alanyl-D-alanine carboxypeptidase — —
Acidovorax sp. GW101-3H11 0.31 Ac3H11_770 Lysine exporter protein (LYSE/YGGA) 0.48 Ac3H11_2142 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Variovorax sp. SCN45 0.31 GFF763 Transporter, LysE family 0.49 GFF3627 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 127
Rhodanobacter sp. FW510-T8 0.31 OKGIIK_13285 LysE type translocator 0.40 OKGIIK_00090 serine-type D-Ala-D-Ala carboxypeptidase — —
Rhizobium sp. OAE497 0.31 ABIE40_RS06290 LysE family translocator 0.24 ABIE40_RS09505 D-alanyl-D-alanine carboxypeptidase family protein low > 107
Serratia liquefaciens MT49 0.30 IAI46_07470 LysE family translocator 0.35 IAI46_05915 D-alanyl-D-alanine carboxypeptidase DacA low > 86
Variovorax sp. OAS795 0.30 ABID97_RS05270 LysE family translocator 0.49 ABID97_RS00695 D-alanyl-D-alanine carboxypeptidase family protein low > 91
Bosea sp. OAE506 0.30 ABIE41_RS14940 LysE family translocator 0.31 ABIE41_RS15965 D-alanyl-D-alanine carboxypeptidase family protein — —
Dyella japonica UNC79MFTsu3.2 0.30 ABZR86_RS13475 LysE family translocator 0.41 ABZR86_RS17490 D-alanyl-D-alanine carboxypeptidase family protein — —
Pseudomonas sp. S08-1 0.29 OH686_05525 Threonine efflux protein 0.40 OH686_09300 D-alanyl-D-alanine carboxypeptidase low > 80
Pseudomonas simiae WCS417 0.29 PS417_23295 lysine transporter LysE 0.43 PS417_24705 D-alanyl-D-alanine carboxypeptidase low > 88
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS25030 LysE family translocator 0.43 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Shewanella sp. ANA-3 0.28 Shewana3_0836 lysine exporter protein LysE/YggA (RefSeq) 0.35 Shewana3_0991 penicillin-binding protein 6 (RefSeq) low > 73
Pseudomonas fluorescens SBW25 0.28 PFLU_RS25030 LysE family translocator 0.43 PFLU_RS26635 D-alanyl-D-alanine carboxypeptidase low > 109
Klebsiella michiganensis M5al 0.28 BWI76_RS13880 lysine transporter LysE 0.36 BWI76_RS09145 serine-type D-Ala-D-Ala carboxypeptidase low > 92
Vibrio cholerae E7946 ATCC 55056 0.28 CSW01_15835 LysE family translocator 0.38 CSW01_04845 D-alanyl-D-alanine carboxypeptidase low > 62
Agrobacterium fabrum C58 0.28 Atu2669 RhtB family transporter 0.24 Atu1499 penicillin binding protein low > 89
Sinorhizobium meliloti 1021 0.27 SM_b21507 amino acid transporter, exporter protein 0.25 SMc01188 penicillin-binding precursor (D-alanyl-D-alanine carboxypeptidase fraction A) transmembrane protein — —
Rhodospirillum rubrum S1H 0.27 Rru_A3172 Lysine exporter protein (LYSE/YGGA) (NCBI) 0.35 Rru_A1704 Serine-type D-Ala-D-Ala carboxypeptidase (NCBI) — —
Pseudomonas fluorescens FW300-N2E3 0.27 AO353_23075 lysine transporter LysE 0.42 AO353_06455 D-alanyl-D-alanine carboxypeptidase low > 101
Rahnella sp. WP5 0.26 EX31_RS12090 LysE family translocator 0.38 EX31_RS07145 serine hydrolase low > 89
Sphingomonas koreensis DSMZ 15582 0.26 Ga0059261_0866 Putative threonine efflux protein 0.34 Ga0059261_0122 D-alanyl-D-alanine carboxypeptidase — —
Pantoea sp. MT58 0.26 IAI47_19320 LysE family translocator 0.36 IAI47_07170 serine-type D-Ala-D-Ala carboxypeptidase DacD low > 76
Lysobacter sp. OAE881 0.26 ABIE51_RS15690 LysE family translocator 0.42 ABIE51_RS03165 D-alanyl-D-alanine carboxypeptidase family protein low > 62
Enterobacter sp. TBS_079 0.26 MPMX20_01165 Leucine efflux protein 0.36 MPMX20_01477 D-alanyl-D-alanine carboxypeptidase DacC low > 85
Pseudomonas putida KT2440 0.26 PP_3652 Transporter, LysE family 0.43 PP_4803 D-alanyl-D-alanine carboxypeptidase low > 96
Rhodopseudomonas palustris CGA009 0.25 TX73_004635 LysE family translocator 0.29 TX73_014370 D-alanyl-D-alanine carboxypeptidase low > 86
Pseudomonas sp. RS175 0.25 PFR28_03480 Homoserine/homoserine lactone efflux protein 0.42 PFR28_03864 D-alanyl-D-alanine carboxypeptidase DacC low > 88
Pseudomonas fluorescens FW300-N1B4 0.25 Pf1N1B4_786 L-lysine permease 0.42 Pf1N1B4_2696 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Pseudomonas fluorescens FW300-N2C3 0.25 AO356_17725 lysine transporter LysE 0.42 AO356_15330 D-alanyl-D-alanine carboxypeptidase low > 104
Pseudomonas fluorescens FW300-N2E2 0.25 Pf6N2E2_5469 L-lysine permease 0.42 Pf6N2E2_5001 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) low > 103
Pseudomonas fluorescens GW456-L13 0.25 PfGW456L13_4780 L-lysine permease 0.42 PfGW456L13_1364 D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4) — —
Marinobacter adhaerens HP15 0.24 HP15_1044 lysine exporter protein (LYSE/YGGA) 0.42 HP15_608 serine-type D-Ala-D-Ala carboxypeptidase — —
Shewanella loihica PV-4 0.24 Shew_3860 lysine exporter protein LysE/YggA (RefSeq) 0.38 Shew_2939 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) low > 60
Acinetobacter radioresistens SK82 0.23 MPMX26_02227 Leucine efflux protein 0.37 MPMX26_01051 D-alanyl-D-alanine carboxypeptidase DacA low > 36
Dickeya dianthicola ME23 0.23 DZA65_RS07935 LysE family translocator 0.37 DZA65_RS09745 D-alanyl-D-alanine carboxypeptidase low > 75
Pectobacterium carotovorum WPP14 0.23 HER17_RS21215 LysE family translocator 0.36 HER17_RS12545 serine hydrolase low > 75
Dinoroseobacter shibae DFL-12 0.23 Dshi_0187 Lysine exporter protein (LYSE/YGGA) (RefSeq) 0.25 Dshi_0923 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —
Phaeobacter inhibens DSM 17395 0.22 PGA1_c00180 lysE type translocator-like protein 0.29 PGA1_c08020 D-alanyl-D-alanine carboxypeptidase DacC — —
Shewanella amazonensis SB2B 0.15 Sama_2833 amino acid transporter LysE (RefSeq) 0.36 Sama_2592 Serine-type D-Ala-D-Ala carboxypeptidase (RefSeq) — —

Not shown: 6 genomes with orthologs for HSERO_RS15750 only; 27 genomes with orthologs for HSERO_RS21530 only