Conservation of cofitness between HSERO_RS01560 and HSERO_RS16500 in Herbaspirillum seropedicae SmR1

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01560 transporter 1.0 HSERO_RS16500 3-isopropylmalate dehydrogenase 0.33 19
Dechlorosoma suillum PS 0.79 Dsui_2026 hydrophobe/amphiphile efflux-1 (HAE1) family transporter 0.69 Dsui_3198 3-isopropylmalate dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS20105 efflux RND transporter permease subunit 0.86 QEN71_RS17620 3-isopropylmalate dehydrogenase low > 153
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS22515 multidrug efflux RND transporter permease subunit 0.85 BPHYT_RS33900 3-isopropylmalate dehydrogenase low > 109
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_03190 multidrug efflux pump 0.86 H281DRAFT_06072 3-isopropylmalate dehydrogenase low > 103
Paraburkholderia graminis OAS925 0.76 ABIE53_004106 multidrug efflux pump 0.86 ABIE53_004804 3-isopropylmalate dehydrogenase low > 113
Azospirillum brasilense Sp245 0.73 AZOBR_RS28205 transporter 0.49 AZOBR_RS14130 3-isopropylmalate dehydrogenase low > 97
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS19400 efflux RND transporter permease subunit 0.87 ABZR87_RS14530 3-isopropylmalate dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.72 RPSI07_RS05175 multidrug efflux RND transporter permease subunit 0.87 RPSI07_RS14705 3-isopropylmalate dehydrogenase low > 81
Ralstonia solanacearum UW163 0.72 UW163_RS20755 multidrug efflux RND transporter permease subunit 0.88 UW163_RS11115 3-isopropylmalate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS18375 multidrug efflux RND transporter permease subunit 0.88 RALBFv3_RS02610 3-isopropylmalate dehydrogenase low > 76
Azospirillum sp. SherDot2 0.71 MPMX19_02968 multidrug efflux RND transporter permease subunit OqxB28 0.51 MPMX19_00607 3-isopropylmalate dehydrogenase low > 112
Ralstonia solanacearum GMI1000 0.71 RS_RS22490 multidrug efflux RND transporter permease subunit 0.87 RS_RS09990 3-isopropylmalate dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS27685 multidrug efflux RND transporter permease subunit 0.91 RR42_RS14385 3-isopropylmalate dehydrogenase low > 128
Acidovorax sp. GW101-3H11 0.69 Ac3H11_258 RND multidrug efflux transporter; Acriflavin resistance protein 0.82 Ac3H11_1528 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 79
Variovorax sp. SCN45 0.68 GFF429 RND efflux system, inner membrane transporter 0.79 GFF3888 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 127
Magnetospirillum magneticum AMB-1 0.67 AMB_RS09480 multidrug efflux RND transporter permease subunit 0.51 AMB_RS20570 3-isopropylmalate dehydrogenase — —
Variovorax sp. OAS795 0.67 ABID97_RS17350 efflux RND transporter permease subunit 0.81 ABID97_RS08455 3-isopropylmalate dehydrogenase — —
Rhizobium sp. OAE497 0.67 ABIE40_RS14875 multidrug efflux RND transporter permease subunit 0.51 ABIE40_RS19050 3-isopropylmalate dehydrogenase low > 107
Rhodospirillum rubrum S1H 0.66 Rru_A0886 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) 0.52 Rru_A1191 3-isopropylmalate dehydrogenase (NCBI) low > 58
Pseudomonas sp. RS175 0.66 PFR28_02013 multidrug efflux RND transporter permease subunit OqxB10 0.64 PFR28_02821 3-isopropylmalate dehydrogenase low > 88
Sinorhizobium meliloti 1021 0.66 SMc01095 multidrug-efflux system transmembrane protein 0.50 SMc04405 3-isopropylmalate dehydrogenase 0.26 58
Agrobacterium fabrum C58 0.63 Atu2483 AcrB/AcrD/AcrF family protein 0.49 Atu2791 3-isopropylmalate dehydrogenase low > 89
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.63 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.63 Psyr_1985 3-isopropylmalate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_27605 transporter 0.65 AO356_21415 3-isopropylmalate dehydrogenase low > 104
Pseudomonas putida KT2440 0.61 PP_3426 Multidrug efflux RND transporter MexF 0.64 PP_1988 3-isopropylmalate dehydrogenase low > 96
Pseudomonas simiae WCS417 0.61 PS417_13190 transporter 0.65 PS417_18585 3-isopropylmalate dehydrogenase low > 88
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.65 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.65 PFLU_RS20565 3-isopropylmalate dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_23960 transporter 0.64 AO353_20635 3-isopropylmalate dehydrogenase low > 101
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_3060 Multidrug efflux transporter MexF 0.64 PfGW456L13_3945 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.49 15
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS08140 multidrug efflux RND transporter permease subunit 0.38 LRK54_RS10325 3-isopropylmalate dehydrogenase low > 59
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_824 Multidrug efflux transporter MexF 0.65 Pf6N2E2_66 3-isopropylmalate dehydrogenase (EC 1.1.1.85) 0.14 87
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4864 Multidrug efflux transporter MexF 0.64 Pf1N1B4_12 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 87
Rhodanobacter denitrificans MT42 0.61 LRK55_RS07890 efflux RND transporter permease subunit 0.38 LRK55_RS09965 3-isopropylmalate dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_14955 oqxB multidrug efflux RND transporter permease subunit 0.39 OKGIIK_13595 leuB 3-isopropylmalate dehydrogenase low > 52
Pseudomonas stutzeri RCH2 0.60 Psest_2144 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.63 Psest_2589 3-isopropylmalate dehydrogenase low > 67
Pseudomonas sp. S08-1 0.60 OH686_01005 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.62 OH686_04470 3-isopropylmalate dehydrogenase low > 80
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS15400 efflux RND transporter permease subunit 0.37 ABZR86_RS15950 3-isopropylmalate dehydrogenase low > 74
Shewanella sp. ANA-3 0.59 Shewana3_1078 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.45 Shewana3_3760 3-isopropylmalate dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO3492 mexF RND multidrug efflux transporter MexF (NCBI ptt file) 0.46 SO4235 leuB 3-isopropylmalate dehydrogenase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.58 MIT1002_02998 Efflux pump membrane transporter BepE 0.48 MIT1002_00948 3-isopropylmalate dehydrogenase low > 70
Pantoea sp. MT58 0.57 IAI47_10310 multidrug efflux RND transporter permease subunit OqxB 0.47 IAI47_16005 3-isopropylmalate dehydrogenase low > 76
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF4246 RND efflux system, inner membrane transporter CmeB 0.49 GFF165 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 78
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.3477.1 RND efflux system, inner membrane transporter CmeB 0.61 Xcc-8004.1053.1 3-isopropylmalate dehydrogenase (EC 1.1.1.85) low > 74
Klebsiella michiganensis M5al 0.55 BWI76_RS12955 multidrug efflux RND transporter permease subunit OqxB 0.49 BWI76_RS04675 3-isopropylmalate dehydrogenase low > 92
Rahnella sp. WP5 0.55 EX31_RS01495 multidrug efflux RND transporter permease subunit 0.47 EX31_RS03685 3-isopropylmalate dehydrogenase low > 89
Enterobacter sp. TBS_079 0.55 MPMX20_01155 multidrug efflux RND transporter permease subunit OqxB3 0.49 MPMX20_00768 3-isopropylmalate dehydrogenase low > 85
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1472 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.49 EX28DRAFT_3669 3-isopropylmalate dehydrogenase low > 76
Serratia liquefaciens MT49 0.54 IAI46_13385 efflux RND transporter permease subunit 0.49 IAI46_03350 3-isopropylmalate dehydrogenase low > 86
Sphingomonas koreensis DSMZ 15582 0.53 Ga0059261_0436 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.61 Ga0059261_3190 3-isopropylmalate dehydrogenase low > 68
Lysobacter sp. OAE881 0.53 ABIE51_RS01060 multidrug efflux RND transporter permease subunit 0.43 ABIE51_RS17585 3-isopropylmalate dehydrogenase low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS09925 multidrug efflux RND transporter permease subunit 0.39 A4249_RS09995 3-isopropylmalate dehydrogenase low > 48
Shewanella loihica PV-4 0.44 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.46 Shew_3471 3-isopropylmalate dehydrogenase (RefSeq) 0.51 40

Not shown: 0 genomes with orthologs for HSERO_RS01560 only; 44 genomes with orthologs for HSERO_RS16500 only