Conservation of cofitness between HSERO_RS06265 and HSERO_RS10945 in Herbaspirillum seropedicae SmR1

57 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS06265 3-hydroxybutyrate dehydrogenase 1.0 HSERO_RS10945 ribonuclease HII 0.23 13
Variovorax sp. OAS795 0.73 ABID97_RS14375 3-hydroxybutyrate dehydrogenase 0.47 ABID97_RS17100 ribonuclease HII low > 91
Azospirillum sp. SherDot2 0.68 MPMX19_02212 D-beta-hydroxybutyrate dehydrogenase 0.37 MPMX19_05650 Ribonuclease HII low > 112
Marinobacter adhaerens HP15 0.67 HP15_3798 3-hydroxybutyrate dehydrogenase 0.46 HP15_1180 ribonuclease HII low > 73
Lysobacter sp. OAE881 0.66 ABIE51_RS15715 3-hydroxybutyrate dehydrogenase 0.36 ABIE51_RS06875 ribonuclease HII low > 62
Dyella japonica UNC79MFTsu3.2 0.66 ABZR86_RS15585 3-hydroxybutyrate dehydrogenase 0.44 ABZR86_RS21650 ribonuclease HII low > 74
Ralstonia sp. UNC404CL21Col 0.65 ABZR87_RS19645 3-hydroxybutyrate dehydrogenase 0.54 ABZR87_RS11895 ribonuclease HII low > 80
Rhodanobacter sp. FW510-T8 0.65 OKGIIK_15630 3-hydroxybutyrate dehydrogenase 0.43 OKGIIK_10205 rnhB ribonuclease HII low > 52
Ralstonia solanacearum GMI1000 0.63 RS_RS22245 3-hydroxybutyrate dehydrogenase 0.53 RS_RS07115 ribonuclease HII — —
Rhodanobacter denitrificans MT42 0.63 LRK55_RS08675 3-hydroxybutyrate dehydrogenase 0.40 LRK55_RS03070 ribonuclease HII low > 63
Rhodanobacter denitrificans FW104-10B01 0.63 LRK54_RS09145 3-hydroxybutyrate dehydrogenase 0.40 LRK54_RS03320 ribonuclease HII low > 59
Enterobacter sp. TBS_079 0.63 MPMX20_00365 D-beta-hydroxybutyrate dehydrogenase 0.52 MPMX20_00867 Ribonuclease HII low > 85
Ralstonia solanacearum IBSBF1503 0.63 RALBFv3_RS18705 3-hydroxybutyrate dehydrogenase 0.54 RALBFv3_RS00445 ribonuclease HII — —
Ralstonia solanacearum UW163 0.63 UW163_RS20425 3-hydroxybutyrate dehydrogenase 0.54 UW163_RS13775 ribonuclease HII — —
Ralstonia solanacearum PSI07 0.62 RPSI07_RS04890 3-hydroxybutyrate dehydrogenase 0.54 RPSI07_RS17030 ribonuclease HII low > 81
Bosea sp. OAE506 0.37 ABIE41_RS20260 3-hydroxybutyrate dehydrogenase 0.35 ABIE41_RS22855 ribonuclease HII — —
Alteromonas macleodii MIT1002 0.37 MIT1002_01448 D-beta-hydroxybutyrate dehydrogenase 0.49 MIT1002_01017 Ribonuclease HII low > 70
Sinorhizobium meliloti 1021 0.36 SM_b21010 D-beta-hydroxybutyrate dehydrogenase 0.31 SMc00867 ribonuclease HII — —
Dinoroseobacter shibae DFL-12 0.36 Dshi_1544 3-hydroxybutyrate dehydrogenase (RefSeq) 0.34 Dshi_0023 Ribonuclease H (RefSeq) low > 64
Agrobacterium fabrum C58 0.35 Atu2308 d-beta-hydroxybutyrate dehydrogenase 0.36 Atu0720 ribonuclease HII low > 89
Xanthomonas campestris pv. campestris strain 8004 0.35 Xcc-8004.2418.1 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.41 Xcc-8004.3570.1 Ribonuclease HII (EC 3.1.26.4) low > 74
Phaeobacter inhibens DSM 17395 0.35 PGA1_c15020 D-beta-hydroxybutyrate dehydrogenase BdhA 0.39 PGA1_c33580 ribonuclease HII low > 62
Caulobacter crescentus NA1000 Δfur 0.33 CCNA_03495 D-beta-hydroxybutyrate dehydrogenase 0.43 CCNA_00383 ribonuclease HII low > 67
Caulobacter crescentus NA1000 0.33 CCNA_03495 D-beta-hydroxybutyrate dehydrogenase 0.43 CCNA_00383 ribonuclease HII low > 66
Castellaniella sp019104865 MT123 0.32 ABCV34_RS01165 3-hydroxybutyrate dehydrogenase 0.52 ABCV34_RS04040 ribonuclease HII low > 48
Brevundimonas sp. GW460-12-10-14-LB2 0.32 A4249_RS06090 3-hydroxybutyrate dehydrogenase 0.44 A4249_RS09510 ribonuclease HII low > 48
Pseudomonas stutzeri RCH2 0.31 Psest_3522 3-hydroxybutyrate dehydrogenase 0.56 Psest_2828 Ribonuclease HII — —
Magnetospirillum magneticum AMB-1 0.31 AMB_RS13470 3-hydroxybutyrate dehydrogenase 0.37 AMB_RS20190 ribonuclease HII low > 64
Hydrogenophaga sp. GW460-11-11-14-LB1 0.31 GFF4927 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.50 GFF4901 Ribonuclease HII (EC 3.1.26.4) low > 90
Acidovorax sp. GW101-3H11 0.30 Ac3H11_360 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.48 Ac3H11_432 Ribonuclease HII (EC 3.1.26.4) low > 79
Dechlorosoma suillum PS 0.30 Dsui_2312 3-hydroxybutyrate dehydrogenase 0.60 Dsui_2680 ribonuclease HII low > 51
Escherichia coli ECRC62 0.30 BNILDI_17500 3-hydroxybutyrate dehydrogenase 0.52 BNILDI_09185 rnhB ribonuclease HII low > 75
Sphingomonas koreensis DSMZ 15582 0.30 Ga0059261_2771 3-hydroxybutyrate dehydrogenase 0.40 Ga0059261_1962 RNase HII (EC 3.1.26.4) low > 68
Enterobacter asburiae PDN3 0.30 EX28DRAFT_1712 3-hydroxybutyrate dehydrogenase 0.52 EX28DRAFT_3771 RNase HII (EC 3.1.26.4) low > 76
Escherichia coli ECOR27 0.30 NOLOHH_19015 3-hydroxybutyrate dehydrogenase 0.52 NOLOHH_02485 rnhB ribonuclease HII low > 75
Rhodospirillum rubrum S1H 0.29 Rru_A1264 Short-chain dehydrogenase/reductase SDR (NCBI) 0.32 Rru_A3209 Ribonuclease H (NCBI) — —
Azospirillum brasilense Sp245 0.29 AZOBR_RS16640 3-hydroxybutyrate dehydrogenase 0.40 AZOBR_RS20300 ribonuclease HII — —
Pseudomonas sp. S08-1 0.29 OH686_00815 3-hydroxybutyrate dehydrogenase 0.55 OH686_06415 Ribonuclease HII — —
Pantoea sp. MT58 0.29 IAI47_21750 (S)-acetoin forming diacetyl reductase 0.51 IAI47_15460 ribonuclease HII low > 76
Pseudomonas fluorescens FW300-N2E3 0.29 AO353_21770 3-hydroxybutyrate dehydrogenase 0.54 AO353_16530 ribonuclease HII low > 101
Pseudomonas simiae WCS417 0.29 PS417_12150 3-hydroxybutyrate dehydrogenase 0.54 PS417_06280 ribonuclease HII — —
Pseudomonas fluorescens FW300-N1B4 0.29 Pf1N1B4_5633 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.55 Pf1N1B4_3098 Ribonuclease HII (EC 3.1.26.4) — —
Pseudomonas fluorescens GW456-L13 0.29 PfGW456L13_2873 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.55 PfGW456L13_4694 Ribonuclease HII (EC 3.1.26.4) — —
Pontibacter actiniarum KMM 6156, DSM 19842 0.29 CA264_05955 SDR family oxidoreductase 0.36 CA264_00195 ribonuclease HII low > 74
Pseudomonas fluorescens FW300-N2C3 0.28 AO356_00420 3-hydroxybutyrate dehydrogenase 0.55 AO356_05970 ribonuclease HII low > 104
Pseudomonas sp. RS175 0.28 PFR28_01395 D-beta-hydroxybutyrate dehydrogenase 0.55 PFR28_00410 Ribonuclease HII — —
Klebsiella michiganensis M5al 0.28 BWI76_RS16755 acetoin reductase 0.50 BWI76_RS05285 ribonuclease HII — —
Pseudomonas fluorescens FW300-N2E2 0.28 Pf6N2E2_2041 D-beta-hydroxybutyrate dehydrogenase (EC 1.1.1.30) 0.55 Pf6N2E2_3055 Ribonuclease HII (EC 3.1.26.4) low > 103
Pseudomonas fluorescens SBW25 0.28 PFLU_RS12840 3-hydroxybutyrate dehydrogenase 0.54 PFLU_RS06345 ribonuclease HII low > 109
Pseudomonas fluorescens SBW25-INTG 0.28 PFLU_RS12840 3-hydroxybutyrate dehydrogenase 0.54 PFLU_RS06345 ribonuclease HII low > 109
Pseudomonas putida KT2440 0.28 PP_3073 3-hydroxybutyrate dehydrogenase 0.52 PP_1605 Ribonuclease HII low > 96
Shewanella amazonensis SB2B 0.27 Sama_0517 D-beta-hydroxybutyrate dehydrogenase (RefSeq) 0.44 Sama_1153 rnhB ribonuclease HII (RefSeq) low > 62
Shewanella sp. ANA-3 0.27 Shewana3_3466 short-chain dehydrogenase/reductase SDR (RefSeq) 0.43 Shewana3_2801 rnhB ribonuclease HII (RefSeq) low > 73
Rahnella sp. WP5 0.27 EX31_RS01815 (S)-acetoin forming diacetyl reductase 0.52 EX31_RS12965 ribonuclease HII low > 89
Dickeya dadantii 3937 0.27 DDA3937_RS16280 (S)-acetoin forming diacetyl reductase 0.49 DDA3937_RS05185 ribonuclease HII low > 74
Dickeya dianthicola ME23 0.26 DZA65_RS17475 (S)-acetoin forming diacetyl reductase 0.50 DZA65_RS05525 ribonuclease HII — —
Pseudomonas syringae pv. syringae B728a 0.24 Psyr_4813 Short-chain dehydrogenase/reductase SDR 0.55 Psyr_1357 RNase HII low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.24 Psyr_4813 Short-chain dehydrogenase/reductase SDR 0.55 Psyr_1357 RNase HII low > 86

Not shown: 8 genomes with orthologs for HSERO_RS06265 only; 34 genomes with orthologs for HSERO_RS10945 only