Conservation of cofitness between HSERO_RS00910 and HSERO_RS06245 in Herbaspirillum seropedicae SmR1

69 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS00910 peptidase 1.0 HSERO_RS06245 catalase-peroxidase 0.50 4
Cupriavidus basilensis FW507-4G11 0.83 RR42_RS01060 peptidase 0.72 RR42_RS26270 hydroperoxidase low > 128
Variovorax sp. SCN45 0.81 GFF4484 ATP-dependent protease subunit HslV (EC 3.4.25.2) 0.73 GFF4692 Catalase-peroxidase KatG (EC 1.11.1.21) low > 127
Dechlorosoma suillum PS 0.80 Dsui_0581 ATP-dependent protease HslVU, peptidase subunit 0.56 Dsui_2233 catalase/peroxidase HPI low > 51
Acidovorax sp. GW101-3H11 0.78 Ac3H11_2004 ATP-dependent protease HslV (EC 3.4.25.-) 0.69 Ac3H11_135 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 79
Paraburkholderia bryophila 376MFSha3.1 0.77 H281DRAFT_02206 HslV component of HslUV peptidase. Threonine peptidase. MEROPS family T01B 0.70 H281DRAFT_00053 catalase-peroxidase low > 103
Ralstonia solanacearum PSI07 0.77 RPSI07_RS23735 ATP-dependent protease subunit HslV 0.72 RPSI07_RS20110 catalase/peroxidase HPI low > 81
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS01635 ATP-dependent protease subunit HslV 0.75 BPHYT_RS10310 catalase-peroxidase
Ralstonia sp. UNC404CL21Col 0.77 ABZR87_RS05115 ATP-dependent protease subunit HslV 0.65 ABZR87_RS01240 catalase/peroxidase HPI low > 80
Ralstonia solanacearum IBSBF1503 0.77 RALBFv3_RS09630 ATP-dependent protease subunit HslV 0.73 RALBFv3_RS13105 catalase/peroxidase HPI low > 76
Ralstonia solanacearum UW163 0.77 UW163_RS03950 ATP-dependent protease subunit HslV 0.73 UW163_RS00460 catalase/peroxidase HPI
Paraburkholderia sabiae LMG 24235 0.76 QEN71_RS00335 ATP-dependent protease subunit HslV 0.75 QEN71_RS29740 catalase/peroxidase HPI low > 153
Shewanella amazonensis SB2B 0.70 Sama_0441 ATP-dependent protease peptidase subunit (RefSeq) 0.58 Sama_0745 catalase (RefSeq) low > 62
Marinobacter adhaerens HP15 0.70 HP15_466 ATP-dependent protease peptidase subunit 0.55 HP15_1397 peroxidase/catalase HPI low > 73
Kangiella aquimarina DSM 16071 0.70 B158DRAFT_0748 ATP-dependent protease HslVU, peptidase subunit 0.58 B158DRAFT_0261 catalase/peroxidase HPI low > 40
Hydrogenophaga sp. GW460-11-11-14-LB1 0.70 GFF552 ATP-dependent protease HslV (EC 3.4.25.-) 0.63 GFF637 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 90
Dickeya dadantii 3937 0.69 DDA3937_RS00920 ATP-dependent protease subunit HslV 0.70 DDA3937_RS07265 catalase/peroxidase HPI low > 74
Serratia liquefaciens MT49 0.69 IAI46_24570 ATP-dependent protease subunit HslV 0.67 IAI46_17030 catalase/peroxidase HPI low > 86
Dickeya dianthicola 67-19 0.69 HGI48_RS20455 ATP-dependent protease subunit HslV 0.70 HGI48_RS08090 catalase/peroxidase HPI low > 71
Dickeya dianthicola ME23 0.69 DZA65_RS21500 ATP-dependent protease subunit HslV 0.70 DZA65_RS08685 catalase/peroxidase HPI low > 75
Shewanella loihica PV-4 0.69 Shew_0375 ATP-dependent protease peptidase subunit (RefSeq) 0.52 Shew_0709 catalase/peroxidase HPI (RefSeq)
Pectobacterium carotovorum WPP14 0.68 HER17_RS00855 ATP-dependent protease subunit HslV 0.56 HER17_RS09165 catalase/peroxidase HPI low > 75
Dyella japonica UNC79MFTsu3.2 0.68 ABZR86_RS15035 ATP-dependent protease subunit HslV 0.70 ABZR86_RS00615 catalase/peroxidase HPI low > 74
Rahnella sp. WP5 0.67 EX31_RS14240 ATP-dependent protease subunit HslV 0.59 EX31_RS11140 catalase/peroxidase HPI low > 89
Erwinia tracheiphila SCR3 0.67 LU632_RS19670 hslV ATP-dependent protease subunit HslV 0.60 LU632_RS19500 katG catalase/peroxidase HPI
Escherichia coli ECRC102 0.66 NIAGMN_11490 hslV ATP-dependent protease subunit HslV 0.60 NIAGMN_11415 katG catalase/peroxidase HPI
Escherichia coli ECOR38 0.66 HEPCGN_12380 hslV ATP-dependent protease subunit HslV 0.60 HEPCGN_12305 katG catalase/peroxidase HPI low > 87
Escherichia coli ECRC98 0.66 JDDGAC_17360 hslV ATP-dependent protease subunit HslV 0.60 JDDGAC_17285 katG catalase/peroxidase HPI low > 86
Escherichia coli ECRC101 0.66 MCAODC_04235 hslV ATP-dependent protease subunit HslV 0.60 MCAODC_04160 katG catalase/peroxidase HPI low > 87
Escherichia coli ECRC100 0.66 OKFHMN_13735 hslV ATP-dependent protease subunit HslV 0.60 OKFHMN_13660 katG catalase/peroxidase HPI low > 80
Escherichia coli HS(pFamp)R (ATCC 700891) 0.66 OHPLBJKB_04119 ATP-dependent protease subunit HslV 0.60 OHPLBJKB_04108 Catalase-peroxidase low > 73
Escherichia coli BW25113 0.66 b3932 hslV ATP-dependent protease peptidase subunit (NCBI) 0.60 b3942 katG catalase/hydroperoxidase HPI(I) (NCBI) low > 76
Escherichia fergusonii Becca 0.66 EFB2_04686 ATP-dependent protease subunit HslV 0.60 EFB2_04671 Catalase-peroxidase low > 86
Escherichia coli BL21 0.66 ECD_03817 peptidase component of the HslUV protease 0.60 ECD_03828 catalase-peroxidase HPI, heme b-containing low > 61
Escherichia coli ECOR27 0.66 NOLOHH_05880 hslV ATP-dependent protease subunit HslV 0.60 NOLOHH_05805 katG catalase/peroxidase HPI low > 75
Escherichia coli Nissle 1917 0.66 ECOLIN_RS22640 ATP-dependent protease subunit HslV 0.60 ECOLIN_RS22765 catalase/peroxidase HPI low > 55
Escherichia coli ECRC99 0.66 KEDOAH_14425 hslV ATP-dependent protease subunit HslV 0.60 KEDOAH_14500 katG catalase/peroxidase HPI
Vibrio cholerae E7946 ATCC 55056 0.66 CSW01_13515 HslU--HslV peptidase proteolytic subunit 0.58 CSW01_07835 catalase-peroxidase low > 62
Pantoea sp. MT58 0.66 IAI47_00850 ATP-dependent protease subunit HslV 0.58 IAI47_07215 catalase/peroxidase HPI low > 76
Escherichia coli ECRC62 0.66 BNILDI_05650 hslV ATP-dependent protease subunit HslV 0.60 BNILDI_05730 katG catalase/peroxidase HPI low > 75
Enterobacter sp. TBS_079 0.66 MPMX20_04537 ATP-dependent protease subunit HslV 0.61 MPMX20_04528 Catalase-peroxidase low > 85
Enterobacter asburiae PDN3 0.66 EX28DRAFT_4405 ATP-dependent protease HslVU, peptidase subunit 0.61 EX28DRAFT_4414 catalase/peroxidase HPI low > 76
Shewanella oneidensis MR-1 0.65 SO4162 hslV ATP-dependent protease HslV (NCBI ptt file) 0.60 SO4405 katG-2 catalase/peroxidase HPI (NCBI ptt file) low > 76
Shewanella sp. ANA-3 0.65 Shewana3_3699 ATP-dependent protease peptidase subunit (RefSeq) 0.58 Shewana3_0306 catalase/peroxidase HPI (RefSeq) low > 73
Klebsiella michiganensis M5al 0.65 BWI76_RS00755 ATP-dependent protease subunit HslV 0.60 BWI76_RS13925 catalase/peroxidase HPI low > 92
Pseudomonas fluorescens FW300-N2E3 0.65 AO353_12430 ATP-dependent protease subunit HslV 0.70 AO353_23210 hydroperoxidase
Pseudomonas fluorescens FW300-N1B4 0.64 Pf1N1B4_1552 ATP-dependent protease HslV (EC 3.4.25.-) 0.70 Pf1N1B4_4230 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
Alteromonas macleodii MIT1002 0.62 MIT1002_03660 ATP-dependent protease subunit HslV 0.52 MIT1002_03345 Catalase-peroxidase 2 precursor low > 70
Sphingomonas koreensis DSMZ 15582 0.62 Ga0059261_3341 ATP-dependent protease HslVU, peptidase subunit 0.54 Ga0059261_3628 catalase/peroxidase HPI low > 68
Pseudomonas putida KT2440 0.61 PP_5000 peptidase component of the ATP-dependent HslVU protease 0.72 PP_3668 Catalase-peroxidase 0.12 68
Pseudomonas sp. S08-1 0.61 OH686_10095 ATP-dependent protease HslVU, peptidase subunit 0.64 OH686_15490 catalase/peroxidase HPI low > 80
Brevundimonas sp. GW460-12-10-14-LB2 0.61 A4249_RS12390 ATP-dependent protease subunit HslV 0.72 A4249_RS12750 catalase/peroxidase HPI low > 48
Sinorhizobium meliloti 1021 0.61 SMc02575 ATP-dependent protease peptidase subunit 0.66 SMa2379 KatB catalase/peroxidase low > 103
Pseudomonas syringae pv. syringae B728a 0.61 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B 0.72 Psyr_4208 heme catalase/peroxidase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.61 Psyr_0395 HslV component of HslUV peptidase, Threonine peptidase, MEROPS family T01B 0.72 Psyr_4208 heme catalase/peroxidase low > 86
Rhodopseudomonas palustris CGA009 0.60 TX73_001600 ATP-dependent protease subunit HslV 0.65 TX73_002230 catalase/peroxidase HPI low > 86
Bosea sp. OAE506 0.60 ABIE41_RS04430 ATP-dependent protease subunit HslV 0.54 ABIE41_RS01200 catalase/peroxidase HPI low > 77
Pseudomonas stutzeri RCH2 0.59 Psest_3936 ATP-dependent protease HslVU, peptidase subunit 0.62 Psest_2741 catalase/peroxidase HPI low > 67
Pseudomonas fluorescens FW300-N2E2 0.58 Pf6N2E2_3769 ATP-dependent protease HslV (EC 3.4.25.-) 0.72 Pf6N2E2_3430 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7)
Pseudomonas fluorescens FW300-N2C3 0.58 AO356_09455 ATP-dependent protease subunit HslV 0.72 AO356_07735 hydroperoxidase low > 104
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF2314 ATP-dependent protease HslV (EC 3.4.25.-) 0.61 GFF2330 Catalase (EC 1.11.1.6) / Peroxidase (EC 1.11.1.7) low > 78
Agrobacterium fabrum C58 0.56 Atu0044 heat shock protein hslV 0.53 Atu4642 catalase
Caulobacter crescentus NA1000 0.56 CCNA_03843 ATP-dependent endopeptidase hsl proteolytic subunit HslV 0.63 CCNA_03138 peroxidase/catalase katG low > 66
Caulobacter crescentus NA1000 Δfur 0.56 CCNA_03843 ATP-dependent endopeptidase hsl proteolytic subunit HslV 0.63 CCNA_03138 peroxidase/catalase katG low > 67
Echinicola vietnamensis KMM 6221, DSM 17526 0.56 Echvi_3885 ATP-dependent protease HslVU, peptidase subunit 0.66 Echvi_1165 catalase/peroxidase HPI low > 79
Lysobacter sp. OAE881 0.56 ABIE51_RS03040 ATP-dependent protease subunit HslV 0.69 ABIE51_RS07780 catalase/peroxidase HPI low > 62
Rhizobium sp. OAE497 0.55 ABIE40_RS19465 ATP-dependent protease subunit HslV 0.65 ABIE40_RS15040 catalase/peroxidase HPI low > 107
Azospirillum sp. SherDot2 0.54 MPMX19_02548 ATP-dependent protease subunit HslV 0.64 MPMX19_03084 Catalase-peroxidase low > 112
Dinoroseobacter shibae DFL-12 0.53 Dshi_3440 20S proteasome A and B subunits (RefSeq) 0.49 Dshi_3801 catalase/peroxidase HPI (RefSeq) low > 64
Phaeobacter inhibens DSM 17395 0.52 PGA1_c35260 ATP-dependent protease HslV 0.53 PGA1_78p00050 peroxidase/catalase HPI low > 62

Not shown: 18 genomes with orthologs for HSERO_RS00910 only; 5 genomes with orthologs for HSERO_RS06245 only