Conservation of cofitness between HSERO_RS01560 and HSERO_RS01990 in Herbaspirillum seropedicae SmR1

54 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Herbaspirillum seropedicae SmR1 1.0 HSERO_RS01560 transporter 1.0 HSERO_RS01990 shikimate 5-dehydrogenase 0.36 8
Dechlorosoma suillum PS 0.79 Dsui_2026 hydrophobe/amphiphile efflux-1 (HAE1) family transporter 0.57 Dsui_0443 shikimate 5-dehydrogenase — —
Paraburkholderia sabiae LMG 24235 0.77 QEN71_RS20105 efflux RND transporter permease subunit 0.55 QEN71_RS27130 shikimate dehydrogenase low > 153
Burkholderia phytofirmans PsJN 0.77 BPHYT_RS22515 multidrug efflux RND transporter permease subunit 0.53 BPHYT_RS16975 shikimate 5-dehydrogenase 0.15 82
Paraburkholderia bryophila 376MFSha3.1 0.76 H281DRAFT_03190 multidrug efflux pump 0.53 H281DRAFT_06291 shikimate dehydrogenase (EC 1.1.1.25) — —
Paraburkholderia graminis OAS925 0.76 ABIE53_004106 multidrug efflux pump 0.53 ABIE53_003560 shikimate dehydrogenase — —
Azospirillum brasilense Sp245 0.73 AZOBR_RS28205 transporter 0.19 AZOBR_RS01765 shikimate 5-dehydrogenase — —
Ralstonia sp. UNC404CL21Col 0.73 ABZR87_RS19400 efflux RND transporter permease subunit 0.54 ABZR87_RS01605 shikimate dehydrogenase low > 80
Ralstonia solanacearum PSI07 0.72 RPSI07_RS05175 multidrug efflux RND transporter permease subunit 0.54 RPSI07_RS11300 shikimate dehydrogenase low > 81
Ralstonia solanacearum UW163 0.72 UW163_RS20755 multidrug efflux RND transporter permease subunit 0.54 UW163_RS07680 shikimate dehydrogenase — —
Ralstonia solanacearum IBSBF1503 0.71 RALBFv3_RS18375 multidrug efflux RND transporter permease subunit 0.54 RALBFv3_RS05945 shikimate dehydrogenase low > 76
Azospirillum sp. SherDot2 0.71 MPMX19_02968 multidrug efflux RND transporter permease subunit OqxB28 0.18 MPMX19_02560 Shikimate dehydrogenase (NADP(+)) — —
Ralstonia solanacearum GMI1000 0.71 RS_RS22490 multidrug efflux RND transporter permease subunit 0.54 RS_RS13890 shikimate dehydrogenase low > 80
Cupriavidus basilensis FW507-4G11 0.69 RR42_RS27685 multidrug efflux RND transporter permease subunit 0.50 RR42_RS17645 shikimate dehydrogenase low > 128
Acidovorax sp. GW101-3H11 0.69 Ac3H11_258 RND multidrug efflux transporter; Acriflavin resistance protein 0.42 Ac3H11_4044 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 79
Variovorax sp. SCN45 0.68 GFF429 RND efflux system, inner membrane transporter 0.42 GFF4456 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 127
Magnetospirillum magneticum AMB-1 0.67 AMB_RS09480 multidrug efflux RND transporter permease subunit 0.17 AMB_RS23010 shikimate dehydrogenase — —
Variovorax sp. OAS795 0.67 ABID97_RS17350 efflux RND transporter permease subunit 0.40 ABID97_RS06300 shikimate dehydrogenase — —
Rhizobium sp. OAE497 0.67 ABIE40_RS14875 multidrug efflux RND transporter permease subunit 0.19 ABIE40_RS19250 shikimate dehydrogenase — —
Rhodospirillum rubrum S1H 0.66 Rru_A0886 Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) 0.20 Rru_A3613 Quinate/Shikimate 5-dehydrogenase (NCBI) — —
Pseudomonas sp. RS175 0.66 PFR28_02013 multidrug efflux RND transporter permease subunit OqxB10 0.55 PFR28_04655 Shikimate dehydrogenase (NADP(+)) — —
Sinorhizobium meliloti 1021 0.66 SMc01095 multidrug-efflux system transmembrane protein 0.22 SMc02791 shikimate 5-dehydrogenase — —
Agrobacterium fabrum C58 0.63 Atu2483 AcrB/AcrD/AcrF family protein 0.22 Atu0003 shikimate 5-dehydrogenase — —
Pseudomonas syringae pv. syringae B728a 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.56 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.62 Psyr_2968 Hydrophobe/amphiphile efflux-1 HAE1 0.56 Psyr_0025 shikimate dehydrogenase low > 86
Pseudomonas fluorescens FW300-N2C3 0.62 AO356_27605 transporter 0.56 AO356_11315 shikimate dehydrogenase low > 104
Pseudomonas putida KT2440 0.61 PP_3426 Multidrug efflux RND transporter MexF 0.53 PP_0074 shikimate 5-dehydrogenase — —
Pseudomonas simiae WCS417 0.61 PS417_13190 transporter 0.55 PS417_00125 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.54 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens SBW25 0.61 PFLU_RS14260 efflux RND transporter permease subunit 0.54 PFLU_RS00120 shikimate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E3 0.61 AO353_23960 transporter 0.55 AO353_10670 shikimate dehydrogenase low > 101
Pseudomonas fluorescens GW456-L13 0.61 PfGW456L13_3060 Multidrug efflux transporter MexF 0.55 PfGW456L13_644 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Rhodanobacter denitrificans FW104-10B01 0.61 LRK54_RS08140 multidrug efflux RND transporter permease subunit 0.31 LRK54_RS08595 shikimate dehydrogenase low > 59
Pseudomonas fluorescens FW300-N1B4 0.61 Pf1N1B4_4864 Multidrug efflux transporter MexF 0.56 Pf1N1B4_1906 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 87
Pseudomonas fluorescens FW300-N2E2 0.61 Pf6N2E2_824 Multidrug efflux transporter MexF 0.55 Pf6N2E2_4130 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) — —
Rhodanobacter denitrificans MT42 0.61 LRK55_RS07890 efflux RND transporter permease subunit 0.31 LRK55_RS08360 shikimate dehydrogenase low > 63
Rhodanobacter sp. FW510-T8 0.60 OKGIIK_14955 oqxB multidrug efflux RND transporter permease subunit 0.28 OKGIIK_15365 aroE shikimate dehydrogenase low > 52
Pseudomonas stutzeri RCH2 0.60 Psest_2144 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.57 Psest_0029 shikimate 5-dehydrogenase — —
Pseudomonas sp. S08-1 0.60 OH686_01005 Multidrug efflux system, inner membrane proton/drug antiporter (RND type) 0.54 OH686_12485 Shikimate 5-dehydrogenase I alpha low > 80
Dyella japonica UNC79MFTsu3.2 0.60 ABZR86_RS15400 efflux RND transporter permease subunit 0.28 ABZR86_RS14985 shikimate dehydrogenase low > 74
Shewanella sp. ANA-3 0.59 Shewana3_1078 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.50 Shewana3_0043 aroE shikimate 5-dehydrogenase (RefSeq) low > 73
Shewanella oneidensis MR-1 0.59 SO3492 mexF RND multidrug efflux transporter MexF (NCBI ptt file) 0.49 SO0040 aroE shikimate 5-dehydrogenase (NCBI ptt file) low > 76
Alteromonas macleodii MIT1002 0.58 MIT1002_02998 Efflux pump membrane transporter BepE 0.34 MIT1002_00029 Shikimate dehydrogenase — —
Pantoea sp. MT58 0.57 IAI47_10310 multidrug efflux RND transporter permease subunit OqxB 0.48 IAI47_02315 shikimate dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.56 GFF4246 RND efflux system, inner membrane transporter CmeB 0.43 GFF2397 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 78
Xanthomonas campestris pv. campestris strain 8004 0.56 Xcc-8004.3477.1 RND efflux system, inner membrane transporter CmeB 0.34 Xcc-8004.5020.1 Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25) low > 74
Klebsiella michiganensis M5al 0.55 BWI76_RS12955 multidrug efflux RND transporter permease subunit OqxB 0.46 BWI76_RS25645 shikimate dehydrogenase low > 92
Rahnella sp. WP5 0.55 EX31_RS01495 multidrug efflux RND transporter permease subunit 0.41 EX31_RS15950 shikimate dehydrogenase — —
Enterobacter sp. TBS_079 0.55 MPMX20_01155 multidrug efflux RND transporter permease subunit OqxB3 0.43 MPMX20_04189 Shikimate dehydrogenase (NADP(+)) low > 85
Enterobacter asburiae PDN3 0.54 EX28DRAFT_1472 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.44 EX28DRAFT_0046 shikimate dehydrogenase low > 76
Serratia liquefaciens MT49 0.54 IAI46_13385 efflux RND transporter permease subunit 0.43 IAI46_23240 shikimate dehydrogenase low > 86
Sphingomonas koreensis DSMZ 15582 0.53 Ga0059261_0436 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.17 Ga0059261_2194 shikimate dehydrogenase (EC 1.1.1.25) (from data) low > 68
Lysobacter sp. OAE881 0.53 ABIE51_RS01060 multidrug efflux RND transporter permease subunit 0.34 ABIE51_RS01815 shikimate dehydrogenase low > 62
Brevundimonas sp. GW460-12-10-14-LB2 0.45 A4249_RS09925 multidrug efflux RND transporter permease subunit 0.17 A4249_RS13660 shikimate dehydrogenase — —
Shewanella loihica PV-4 0.44 Shew_1164 hydrophobe/amphiphile efflux-1 (HAE1) family protein (RefSeq) 0.46 Shew_3727 shikimate 5-dehydrogenase (RefSeq) low > 60

Not shown: 0 genomes with orthologs for HSERO_RS01560 only; 48 genomes with orthologs for HSERO_RS01990 only