| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Pectobacterium carotovorum WPP14 | 1.0 | HER17_RS07710 | | UvrY/SirA/GacA family response regulator transcription factor | 1.0 | HER17_RS16300 | | sigma E protease regulator RseP | 0.67 | 20 |
| Dickeya dianthicola ME23 | 0.92 | DZA65_RS14290 | | UvrY/SirA/GacA family response regulator transcription factor | 0.79 | DZA65_RS05490 | | sigma E protease regulator RseP | low | > 75 |
| Dickeya dianthicola 67-19 | 0.91 | HGI48_RS13800 | | UvrY/SirA/GacA family response regulator transcription factor | 0.81 | HGI48_RS05150 | | sigma E protease regulator RseP | low | > 71 |
| Dickeya dadantii 3937 | 0.91 | DDA3937_RS13705 | | UvrY/SirA/GacA family response regulator transcription factor | 0.81 | DDA3937_RS05150 | | sigma E protease regulator RseP | low | > 74 |
| Serratia liquefaciens MT49 | 0.88 | IAI46_09205 | | UvrY/SirA/GacA family response regulator transcription factor | 0.80 | IAI46_20225 | | sigma E protease regulator RseP | — | — |
| Rahnella sp. WP5 | 0.87 | EX31_RS24145 | | UvrY/SirA/GacA family response regulator transcription factor | 0.79 | EX31_RS13000 | | sigma E protease regulator RseP | — | — |
| Pantoea sp. MT58 | 0.86 | IAI47_12470 | | UvrY/SirA/GacA family response regulator transcription factor | 0.76 | IAI47_15495 | | sigma E protease regulator RseP | — | — |
| Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 | 0.84 | GFF1699 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.79 | GFF46 | | Intramembrane protease RasP/YluC, implicated in cell division based on FtsL cleavage | — | — |
| Escherichia fergusonii Becca | 0.84 | EFB2_02032 | | Response regulator UvrY | 0.75 | EFB2_03868 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia coli Nissle 1917 | 0.84 | ECOLIN_RS10900 | | UvrY/SirA/GacA family response regulator transcription factor | 0.75 | ECOLIN_RS00960 | | sigma E protease regulator RseP | — | — |
| Escherichia coli BW25113 | 0.84 | b1914 | uvrY | response regulator (NCBI) | 0.75 | b0176 | yaeL | zinc metallopeptidase (NCBI) | — | — |
| Escherichia coli HS(pFamp)R (ATCC 700891) | 0.84 | OHPLBJKB_01815 | | Response regulator UvrY | 0.75 | OHPLBJKB_03487 | | Regulator of sigma-E protease RseP | — | — |
| Escherichia coli ECRC101 | 0.84 | MCAODC_19570 | uvrC | excinuclease ABC subunit UvrC | 0.75 | MCAODC_00690 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC99 | 0.84 | KEDOAH_02270 | uvrC | excinuclease ABC subunit UvrC | 0.75 | KEDOAH_17980 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC102 | 0.84 | NIAGMN_02230 | uvrC | excinuclease ABC subunit UvrC | 0.75 | NIAGMN_08025 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECOR27 | 0.84 | NOLOHH_16440 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.75 | NOLOHH_02520 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECOR38 | 0.84 | HEPCGN_04175 | uvrC | excinuclease ABC subunit UvrC | 0.75 | HEPCGN_08130 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC98 | 0.84 | JDDGAC_00410 | uvrC | excinuclease ABC subunit UvrC | 0.75 | JDDGAC_13770 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC62 | 0.84 | BNILDI_15230 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.75 | BNILDI_09150 | rseP | sigma E protease regulator RseP | — | — |
| Escherichia coli ECRC100 | 0.84 | OKFHMN_25820 | uvrC | excinuclease ABC subunit UvrC | 0.75 | OKFHMN_10175 | rseP | sigma E protease regulator RseP | — | — |
| Enterobacter sp. TBS_079 | 0.83 | MPMX20_02839 | | Response regulator UvrY | 0.78 | MPMX20_00860 | | Regulator of sigma-E protease RseP | — | — |
| Enterobacter asburiae PDN3 | 0.83 | EX28DRAFT_0633 | | two component transcriptional regulator, LuxR family | 0.78 | EX28DRAFT_3764 | | RIP metalloprotease RseP | — | — |
| Erwinia tracheiphila SCR3 | 0.83 | LU632_RS10190 | uvrY | UvrY/SirA/GacA family response regulator transcription factor | 0.73 | LU632_RS19930 | rseP | sigma E protease regulator RseP | — | — |
| Klebsiella michiganensis M5al | 0.82 | BWI76_RS18335 | | DNA-binding response regulator | 0.77 | BWI76_RS05250 | | zinc metallopeptidase RseP | — | — |
| Vibrio cholerae E7946 ATCC 55056 | 0.76 | CSW01_06135 | | two-component system response regulator UvrY | 0.57 | CSW01_11475 | | zinc metalloprotease | — | — |
| Shewanella sp. ANA-3 | 0.68 | Shewana3_1608 | | response regulator (RefSeq) | 0.55 | Shewana3_2808 | | peptidase RseP (RefSeq) | — | — |
| Shewanella loihica PV-4 | 0.68 | Shew_1824 | | response regulator (RefSeq) | 0.53 | Shew_2628 | | putative membrane-associated zinc metalloprotease (RefSeq) | — | — |
| Shewanella oneidensis MR-1 | 0.67 | SO1860 | | DNA-binding response regulator, LuxR family (NCBI ptt file) | 0.54 | SO1636 | | membrane-associated zinc metalloprotease, putative (NCBI ptt file) | — | — |
| Shewanella amazonensis SB2B | 0.63 | Sama_1607 | | response regulator (RefSeq) | 0.52 | Sama_1146 | | membrane-associated zinc metalloprotease, putative (RefSeq) | low | > 62 |
| Pseudomonas stutzeri RCH2 | 0.57 | Psest_2260 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.41 | Psest_2835 | | RIP metalloprotease RseP | — | — |
| Pseudomonas sp. RS175 | 0.56 | PFR28_01410 | | Response regulator GacA | 0.41 | PFR28_00403 | | Regulator of sigma-E protease RseP | low | > 88 |
| Kangiella aquimarina DSM 16071 | 0.56 | B158DRAFT_1272 | | two component transcriptional regulator, LuxR family | 0.38 | B158DRAFT_1087 | | site-2 protease. Metallo peptidase. MEROPS family M50B | low | > 40 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.56 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | 0.42 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.56 | Psyr_2897 | | regulatory protein, LuxR:Response regulator receiver | 0.42 | Psyr_1350 | | site-2 protease, Metallo peptidase, MEROPS family M50B | low | > 86 |
| Pseudomonas putida KT2440 | 0.55 | PP_4099 | | two-componenent system BarA/UvrY - regulatory subunit | 0.42 | PP_1598 | | regulatory intramembrane protein RIP zinc protease | low | > 96 |
| Pseudomonas fluorescens SBW25-INTG | 0.55 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | 0.42 | PFLU_RS06310 | | sigma E protease regulator RseP | low | > 109 |
| Pseudomonas fluorescens SBW25 | 0.55 | PFLU_RS10765 | | UvrY/SirA/GacA family response regulator transcription factor | 0.42 | PFLU_RS06310 | | sigma E protease regulator RseP | low | > 109 |
| Pseudomonas simiae WCS417 | 0.55 | PS417_10720 | | chemotaxis protein CheY | 0.43 | PS417_06245 | | zinc metallopeptidase RseP | low | > 88 |
| Pseudomonas sp. S08-1 | 0.53 | OH686_00335 | | BarA-associated response regulator UvrY ( GacA SirA) | 0.42 | OH686_06450 | | RIP metalloprotease RseP | — | — |
| Alteromonas macleodii MIT1002 | 0.53 | MIT1002_02154 | | Response regulator UvrY | 0.51 | MIT1002_01011 | | Regulator of sigma E protease | low | > 70 |
| Pseudomonas fluorescens FW300-N2E3 | 0.51 | AO353_21830 | | chemotaxis protein CheY | 0.42 | AO353_16495 | | zinc metallopeptidase RseP | low | > 101 |
| Pseudomonas fluorescens FW300-N1B4 | 0.50 | Pf1N1B4_5619 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.41 | Pf1N1B4_3091 | | Membrane-associated zinc metalloprotease | low | > 87 |
| Pseudomonas fluorescens FW300-N2E2 | 0.50 | Pf6N2E2_2022 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.40 | Pf6N2E2_3062 | | Membrane-associated zinc metalloprotease | 0.35 | 46 |
| Pseudomonas fluorescens FW300-N2C3 | 0.50 | AO356_00355 | | chemotaxis protein CheY | 0.41 | AO356_06005 | | zinc metallopeptidase RseP | 0.49 | 69 |
| Marinobacter adhaerens HP15 | 0.50 | HP15_1567 | | two component transcriptional regulator, LuxR family | 0.41 | HP15_1173 | | membrane-associated zinc metalloprotease | low | > 73 |
| Pseudomonas fluorescens GW456-L13 | 0.50 | PfGW456L13_2885 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.41 | PfGW456L13_4701 | | Membrane-associated zinc metalloprotease | 0.38 | 40 |
| Acinetobacter radioresistens SK82 | 0.46 | MPMX26_00164 | | Response regulator GacA | 0.37 | MPMX26_01300 | | Regulator of sigma-E protease RseP | low | > 36 |
| Dyella japonica UNC79MFTsu3.2 | 0.40 | ABZR86_RS02715 | | response regulator | 0.34 | ABZR86_RS21620 | | RIP metalloprotease RseP | — | — |
| Rhodanobacter denitrificans MT42 | 0.39 | LRK55_RS17740 | | response regulator | 0.35 | LRK55_RS03040 | | RIP metalloprotease RseP | — | — |
| Ralstonia solanacearum GMI1000 | 0.38 | RS_RS01435 | | DNA-binding response regulator | 0.29 | RS_RS07080 | | RIP metalloprotease RseP | low | > 80 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.38 | Xcc-8004.2612.1 | | BarA-associated response regulator UvrY (= GacA = SirA) | 0.34 | Xcc-8004.3562.1 | | hypothetical protein | — | — |
| Ralstonia solanacearum UW163 | 0.38 | UW163_RS02980 | | DNA-binding response regulator | 0.30 | UW163_RS13740 | | RIP metalloprotease RseP | — | — |
| Ralstonia solanacearum IBSBF1503 | 0.38 | RALBFv3_RS10600 | | DNA-binding response regulator | 0.30 | RALBFv3_RS00410 | | RIP metalloprotease RseP | low | > 76 |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_07415 | | DNA-binding response regulator | 0.36 | OKGIIK_10175 | rseP | RIP metalloprotease RseP | low | > 52 |
| Ralstonia solanacearum PSI07 | 0.38 | RPSI07_RS22720 | | DNA-binding response regulator | 0.28 | RPSI07_RS17065 | | RIP metalloprotease RseP | low | > 81 |
| Ralstonia sp. UNC404CL21Col | 0.38 | ABZR87_RS06400 | | response regulator transcription factor | 0.28 | ABZR87_RS11860 | | RIP metalloprotease RseP | low | > 80 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS11810 | | response regulator | 0.35 | ABIE51_RS06905 | | RIP metalloprotease RseP | low | > 62 |
| Variovorax sp. OAS795 | 0.37 | ABID97_RS07360 | | response regulator transcription factor | 0.33 | ABID97_RS17135 | | RIP metalloprotease RseP | low | > 91 |
| Variovorax sp. SCN45 | 0.37 | GFF2564 | | Two-component transcriptional response regulator, LuxR family | 0.34 | GFF386 | | Membrane-associated zinc metalloprotease | low | > 127 |
| Cupriavidus basilensis FW507-4G11 | 0.36 | RR42_RS00785 | | LuxR family transcriptional regulator | 0.30 | RR42_RS11840 | | zinc metalloprotease | low | > 128 |
| Acidovorax sp. GW101-3H11 | 0.36 | Ac3H11_3852 | | DNA-binding response regulator, LuxR family | 0.28 | Ac3H11_425 | | Membrane-associated zinc metalloprotease | — | — |
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 0.36 | GFF2789 | | DNA-binding response regulator, LuxR family | 0.26 | GFF4908 | | Membrane-associated zinc metalloprotease | low | > 90 |
| Herbaspirillum seropedicae SmR1 | 0.36 | HSERO_RS13890 | | LuxR family transcriptional regulator | 0.33 | HSERO_RS10910 | | peptidase | low | > 78 |
| Burkholderia phytofirmans PsJN | 0.35 | BPHYT_RS13150 | | hisitidine kinase | 0.32 | BPHYT_RS12105 | | zinc metalloprotease | — | — |
| Rhodanobacter denitrificans FW104-10B01 | 0.34 | LRK54_RS17520 | | response regulator | 0.36 | LRK54_RS03290 | | RIP metalloprotease RseP | low | > 59 |
| Paraburkholderia sabiae LMG 24235 | 0.34 | QEN71_RS05525 | | response regulator transcription factor | 0.31 | QEN71_RS06455 | | RIP metalloprotease RseP | low | > 153 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.29 | Echvi_2030 | | Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain | 0.17 | Echvi_4671 | | RIP metalloprotease RseP | — | — |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.27 | CA265_RS06400 | | DNA-binding response regulator | 0.15 | CA265_RS03755 | | RIP metalloprotease RseP | — | — |
| Dinoroseobacter shibae DFL-12 | 0.27 | Dshi_2345 | | two component transcriptional regulator, LuxR family (RefSeq) | 0.24 | Dshi_1498 | | putative membrane-associated zinc metalloprotease (RefSeq) | low | > 64 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.27 | CA264_09180 | | DNA-binding response regulator | 0.19 | CA264_00025 | | RIP metalloprotease RseP | low | > 74 |
| Bacteroides ovatus ATCC 8483 | 0.14 | BACOVA_01281 | | transcriptional regulator, LuxR family | 0.14 | BACOVA_01430 | | putative RIP metalloprotease RseP | — | — |
| Bacteroides thetaiotaomicron VPI-5482 | 0.14 | BT0156 | | transcriptional regulator (NCBI ptt file) | 0.13 | BT2001 | | membrane-associated zinc metalloprotease (NCBI ptt file) | — | — |
Not shown: 9 genomes with orthologs for HER17_RS07710 only; 12 genomes with orthologs for HER17_RS16300 only