| Organism | Ratio1 | Gene1 | Name1 | Description1 | Ratio2 | Gene2 | Name2 | Description2 | Cofit | Rank |
|---|
| Hydrogenophaga sp. GW460-11-11-14-LB1 | 1.0 | GFF1721 | | Butyryl-CoA dehydrogenase (EC 1.3.99.2) | 1.0 | GFF647 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | 0.57 | 7 |
| Acidovorax sp. GW101-3H11 | 0.87 | Ac3H11_2996 | | 2-methyl-branched-chain-enoyl-CoA reductase (EC 1.3.8.5) (from data) | 0.58 | Ac3H11_3983 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | low | > 79 |
| Variovorax sp. SCN45 | 0.82 | GFF1995 | | Acyl-CoA dehydrogenase, short-chain specific (EC 1.3.8.1) | 0.63 | GFF2156 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | low | > 127 |
| Variovorax sp. OAS795 | 0.82 | ABID97_RS25215 | | acyl-CoA dehydrogenase family protein | 0.65 | ABID97_RS24680 | | deoxyribodipyrimidine photo-lyase | low | > 91 |
| Burkholderia phytofirmans PsJN | 0.78 | BPHYT_RS02220 | | butyryl-CoA dehydrogenase | 0.57 | BPHYT_RS33665 | | deoxyribodipyrimidine photo-lyase | low | > 109 |
| Paraburkholderia bryophila 376MFSha3.1 | 0.77 | H281DRAFT_02091 | | hypothetical protein | 0.57 | H281DRAFT_06033 | | deoxyribodipyrimidine photo-lyase type I | low | > 103 |
| Paraburkholderia graminis OAS925 | 0.77 | ABIE53_000588 | | butyryl-CoA dehydrogenase | 0.57 | ABIE53_004843 | | deoxyribodipyrimidine photo-lyase | low | > 113 |
| Paraburkholderia sabiae LMG 24235 | 0.76 | QEN71_RS01115 | | acyl-CoA dehydrogenase family protein | 0.55 | QEN71_RS17830 | | deoxyribodipyrimidine photo-lyase | low | > 153 |
| Ralstonia solanacearum IBSBF1503 | 0.75 | RALBFv3_RS10505 | | butyryl-CoA dehydrogenase | 0.56 | RALBFv3_RS12600 | | deoxyribodipyrimidine photo-lyase | low | > 76 |
| Ralstonia solanacearum UW163 | 0.75 | UW163_RS03075 | | butyryl-CoA dehydrogenase | 0.56 | UW163_RS00965 | | deoxyribodipyrimidine photo-lyase | — | — |
| Ralstonia sp. UNC404CL21Col | 0.74 | ABZR87_RS06295 | | acyl-CoA dehydrogenase family protein | 0.57 | ABZR87_RS08600 | | deoxyribodipyrimidine photo-lyase | low | > 80 |
| Cupriavidus basilensis FW507-4G11 | 0.74 | RR42_RS00895 | | acyl-CoA dehydrogenase | 0.59 | RR42_RS15885 | | deoxyribodipyrimidine photolyase | low | > 128 |
| Herbaspirillum seropedicae SmR1 | 0.67 | HSERO_RS04640 | | butyryl-CoA dehydrogenase | 0.61 | HSERO_RS09280 | | deoxyribodipyrimidine photo-lyase | low | > 78 |
| Dechlorosoma suillum PS | 0.67 | Dsui_0977 | | acyl-CoA dehydrogenase | 0.54 | Dsui_0591 | | deoxyribodipyrimidine photolyase | low | > 51 |
| Kangiella aquimarina DSM 16071 | 0.67 | B158DRAFT_2510 | | Acyl-CoA dehydrogenases | 0.26 | B158DRAFT_0621 | | Deoxyribodipyrimidine photolyase | low | > 40 |
| Pseudomonas simiae WCS417 | 0.65 | PS417_13850 | | 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) | 0.27 | PS417_03665 | | deoxyribodipyrimidine photolyase | low | > 88 |
| Pseudomonas putida KT2440 | 0.65 | PP_2216 | | short-chain acyl-CoA dehydrogenase | 0.27 | PP_0739 | | deoxyribodipyrimidine photolyase | low | > 96 |
| Pseudomonas fluorescens SBW25 | 0.64 | PFLU_RS14770 | | acyl-CoA dehydrogenase | 0.28 | PFLU_RS03715 | | deoxyribodipyrimidine photo-lyase | low | > 109 |
| Pseudomonas fluorescens SBW25-INTG | 0.64 | PFLU_RS14770 | | acyl-CoA dehydrogenase | 0.28 | PFLU_RS03715 | | deoxyribodipyrimidine photo-lyase | low | > 109 |
| Pseudomonas fluorescens FW300-N2E3 | 0.64 | AO353_25680 | | 2-methylbutanoyl-CoA dehydrogenase / butanoyl-CoA dehydrogenase / isobutyryl-CoA dehydrogenase (EC 1.3.8.1; EC 1.3.8.5) (from data) | 0.29 | AO353_14820 | | deoxyribodipyrimidine photolyase | low | > 101 |
| Acinetobacter radioresistens SK82 | 0.64 | MPMX26_01178 | | Acyl-CoA dehydrogenase | 0.26 | MPMX26_01004 | | Deoxyribodipyrimidine photo-lyase | — | — |
| Azospirillum sp. SherDot2 | 0.64 | MPMX19_03937 | | Acyl-CoA dehydrogenase | 0.24 | MPMX19_01584 | | Deoxyribodipyrimidine photo-lyase | low | > 112 |
| Pseudomonas fluorescens GW456-L13 | 0.64 | PfGW456L13_2983 | | 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) | 0.28 | PfGW456L13_1589 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | low | > 87 |
| Pseudomonas fluorescens FW300-N1B4 | 0.63 | Pf1N1B4_4787 | | 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) | 0.28 | Pf1N1B4_2927 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | low | > 87 |
| Pseudomonas fluorescens FW300-N2C3 | 0.63 | AO356_26355 | | 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) | 0.27 | AO356_16530 | | deoxyribodipyrimidine photolyase | low | > 104 |
| Pseudomonas fluorescens FW300-N2E2 | 0.63 | Pf6N2E2_1146 | | 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) | 0.29 | Pf6N2E2_5228 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | low | > 103 |
| Pseudomonas sp. S08-1 | 0.63 | OH686_00875 | | Acyl-CoA dehydrogenase, short-chain specific | 0.27 | OH686_07850 | | Deoxyribodipyrimidine photolyase | low | > 80 |
| Pseudomonas sp. RS175 | 0.62 | PFR28_01883 | | Acyl-CoA dehydrogenase | 0.29 | PFR28_03648 | | Deoxyribodipyrimidine photo-lyase | low | > 88 |
| Azospirillum brasilense Sp245 | 0.62 | AZOBR_RS22300 | | acyl-CoA dehydrogenase | 0.29 | AZOBR_RS09290 | | deoxyribodipyrimidine photo-lyase | low | > 97 |
| Pseudomonas stutzeri RCH2 | 0.62 | Psest_2445 | | 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) | 0.29 | Psest_2397 | | Deoxyribodipyrimidine photolyase | low | > 67 |
| Rhizobium sp. OAE497 | 0.61 | ABIE40_RS23185 | | acyl-CoA dehydrogenase family protein | 0.26 | ABIE40_RS08320 | | deoxyribodipyrimidine photo-lyase | low | > 107 |
| Agrobacterium fabrum C58 | 0.59 | Atu3474 | | acyl-CoA dehydrogenase | 0.25 | Atu1218 | | DNA photolyase | low | > 89 |
| Rhodopseudomonas palustris CGA009 | 0.58 | TX73_011920 | | acyl-CoA dehydrogenase family protein | 0.28 | TX73_016440 | | deoxyribodipyrimidine photo-lyase | low | > 86 |
| Pseudomonas syringae pv. syringae B728a | 0.51 | Psyr_1769 | | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal | 0.28 | Psyr_0961 | | deoxyribodipyrimidine photo-lyase type I | low | > 86 |
| Pseudomonas syringae pv. syringae B728a ΔmexB | 0.51 | Psyr_1769 | | Acyl-CoA dehydrogenase, C-terminal:Acyl-CoA dehydrogenase, central region:Acyl-CoA dehydrogenase, N-terminal | 0.28 | Psyr_0961 | | deoxyribodipyrimidine photo-lyase type I | low | > 86 |
| Pedobacter sp. GW460-11-11-14-LB5 | 0.45 | CA265_RS02820 | | acyl-CoA dehydrogenase | 0.36 | CA265_RS17545 | | deoxyribodipyrimidine photolyase | low | > 88 |
| Mucilaginibacter yixingensis YX-36 DSM 26809 | 0.45 | ABZR88_RS17820 | | acyl-CoA dehydrogenase | 0.39 | ABZR88_RS21110 | | deoxyribodipyrimidine photo-lyase | low | > 71 |
| Echinicola vietnamensis KMM 6221, DSM 17526 | 0.44 | Echvi_1212 | | Acyl-CoA dehydrogenases | 0.34 | Echvi_2083 | | Deoxyribodipyrimidine photolyase | low | > 79 |
| Pontibacter actiniarum KMM 6156, DSM 19842 | 0.43 | CA264_19045 | | acyl-CoA dehydrogenase | 0.35 | CA264_08145 | | deoxyribodipyrimidine photo-lyase | low | > 74 |
| Shewanella sp. ANA-3 | 0.42 | Shewana3_2769 | | Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) (from data) | 0.27 | Shewana3_1166 | | deoxyribodipyrimidine photo-lyase type I (RefSeq) | low | > 73 |
| Shewanella oneidensis MR-1 | 0.42 | SO1679 | | 2-methylbutanoyl-CoA dehydrogenase (EC 1.3.8.5) (from data) | 0.28 | SO3384 | phrB | deoxyribodipyrimidine photolyase (NCBI ptt file) | low | > 76 |
| Shewanella amazonensis SB2B | 0.41 | Sama_1377 | | butyryl-CoA dehydrogenase (RefSeq) | 0.29 | Sama_0811 | | deoxyribodipyrimidine photo-lyase (RefSeq) | low | > 62 |
| Shewanella loihica PV-4 | 0.41 | Shew_1669 | | butyryl-CoA dehydrogenase (RefSeq) | 0.32 | Shew_1479 | | deoxyribodipyrimidine photo-lyase (RefSeq) | low | > 60 |
| Caulobacter crescentus NA1000 Δfur | 0.41 | CCNA_01412 | | acyl-CoA dehydrogenase, short-chain specific | 0.28 | CCNA_01495 | | deoxyribodipyrimidine photolyase | low | > 67 |
| Caulobacter crescentus NA1000 | 0.41 | CCNA_01412 | | acyl-CoA dehydrogenase, short-chain specific | 0.28 | CCNA_01495 | | deoxyribodipyrimidine photolyase | low | > 66 |
| Alteromonas macleodii MIT1002 | 0.40 | MIT1002_01978 | | Acyl-CoA dehydrogenase | 0.28 | MIT1002_02045 | | Deoxyribodipyrimidine photo-lyase | low | > 70 |
| Brevundimonas sp. GW460-12-10-14-LB2 | 0.40 | A4249_RS03585 | | isobutyryl-CoA dehydrogenase | 0.27 | A4249_RS05610 | | deoxyribodipyrimidine photo-lyase | low | > 48 |
| Xanthomonas campestris pv. campestris strain 8004 | 0.39 | Xcc-8004.3688.1 | | Branched-chain acyl-CoA dehydrogenase (EC 1.3.99.12) | 0.25 | Xcc-8004.3484.1 | | Deoxyribodipyrimidine photolyase (EC 4.1.99.3) | low | > 74 |
| Dyella japonica UNC79MFTsu3.2 | 0.39 | ABZR86_RS07575 | | acyl-CoA dehydrogenase family protein | 0.25 | ABZR86_RS01855 | | deoxyribodipyrimidine photo-lyase | low | > 74 |
| Rhodanobacter denitrificans MT42 | 0.38 | LRK55_RS01880 | | acyl-CoA dehydrogenase family protein | 0.25 | LRK55_RS07250 | | deoxyribodipyrimidine photo-lyase | low | > 63 |
| Rhodanobacter denitrificans FW104-10B01 | 0.38 | LRK54_RS02105 | | acyl-CoA dehydrogenase family protein | 0.25 | LRK54_RS07510 | | DNA photolyase family protein | low | > 59 |
| Bosea sp. OAE506 | 0.38 | ABIE41_RS23925 | | isobutyryl-CoA dehydrogenase | 0.23 | ABIE41_RS15630 | | deoxyribodipyrimidine photo-lyase | low | > 77 |
| Rhodanobacter sp. FW510-T8 | 0.38 | OKGIIK_09175 | caiA | acyl-CoA dehydrogenase | 0.26 | OKGIIK_13930 | | Deoxyribodipyrimidine photolyase | low | > 52 |
| Marinobacter adhaerens HP15 | 0.37 | HP15_907 | | acyl-CoA dehydrogenase domain protein | 0.28 | HP15_715 | | deoxyribodipyrimidine photolyase | low | > 73 |
| Rhodospirillum rubrum S1H | 0.37 | Rru_A1835 | | Butyryl-CoA dehydrogenase (NCBI) | 0.28 | Rru_A2903 | | Deoxyribodipyrimidine photolyase (NCBI) | low | > 58 |
| Lysobacter sp. OAE881 | 0.37 | ABIE51_RS09100 | | acyl-CoA dehydrogenase family protein | 0.25 | ABIE51_RS09260 | | deoxyribodipyrimidine photo-lyase | low | > 62 |
| Dickeya dianthicola 67-19 | 0.34 | HGI48_RS04780 | | acyl-CoA dehydrogenase family protein | 0.26 | HGI48_RS06450 | | deoxyribodipyrimidine photo-lyase | low | > 71 |
| Dinoroseobacter shibae DFL-12 | 0.32 | Dshi_1750 | | acyl-CoA dehydrogenase domain protein (RefSeq) | 0.20 | Dshi_2318 | | Deoxyribodipyrimidine photo-lyase (RefSeq) | low | > 64 |
| Escherichia coli Nissle 1917 | 0.23 | ECOLIN_RS11565 | | colibactin biosynthesis dehydrogenase ClbF | 0.28 | ECOLIN_RS03790 | | deoxyribodipyrimidine photo-lyase | — | — |
| Escherichia fergusonii Becca | 0.23 | EFB2_01909 | | putative acyl-CoA dehydrogenase fadE25 | 0.28 | EFB2_03395 | | Deoxyribodipyrimidine photo-lyase | low | > 86 |
Not shown: 7 genomes with orthologs for GFF1721 only; 25 genomes with orthologs for GFF647 only