Conservation of cofitness between GFF817 and GFF5493 in Hydrogenophaga sp. GW460-11-11-14-LB1

65 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Hydrogenophaga sp. GW460-11-11-14-LB1 1.0 GFF817 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 1.0 GFF5493 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) 0.73 12
Variovorax sp. OAS795 0.53 ABID97_RS23860 RsmD family RNA methyltransferase 0.47 ABID97_RS07065 glucose-6-phosphate dehydrogenase low > 91
Variovorax sp. SCN45 0.51 GFF2320 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.47 GFF5261 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 127
Ralstonia solanacearum PSI07 0.44 RPSI07_RS22230 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.52 RPSI07_RS07315 glucose-6-phosphate dehydrogenase low > 81
Ralstonia solanacearum IBSBF1503 0.44 RALBFv3_RS11070 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.52 RALBFv3_RS16390 glucose-6-phosphate dehydrogenase low > 76
Ralstonia solanacearum UW163 0.44 UW163_RS02510 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.52 UW163_RS17130 glucose-6-phosphate dehydrogenase — —
Ralstonia solanacearum GMI1000 0.44 RS_RS01920 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.52 RS_RS24615 glucose-6-phosphate dehydrogenase low > 80
Burkholderia phytofirmans PsJN 0.43 BPHYT_RS02815 methyltransferase 0.70 BPHYT_RS24370 glucose-6-phosphate 1-dehydrogenase low > 109
Ralstonia sp. UNC404CL21Col 0.42 ABZR87_RS06960 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.52 ABZR87_RS22915 glucose-6-phosphate dehydrogenase low > 80
Paraburkholderia bryophila 376MFSha3.1 0.41 H281DRAFT_01968 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.71 H281DRAFT_05358 glucose-6-phosphate 1-dehydrogenase low > 103
Paraburkholderia graminis OAS925 0.39 ABIE53_000701 16S rRNA (guanine966-N2)-methyltransferase 0.70 ABIE53_006464 glucose-6-phosphate 1-dehydrogenase low > 113
Paraburkholderia sabiae LMG 24235 0.39 QEN71_RS01665 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.70 QEN71_RS08005 glucose-6-phosphate dehydrogenase low > 153
Cupriavidus basilensis FW507-4G11 0.38 RR42_RS01990 methyltransferase 0.52 RR42_RS37405 glucose-6-phosphate dehydrogenase low > 128
Herbaspirillum seropedicae SmR1 0.34 HSERO_RS20695 methyltransferase 0.55 HSERO_RS05510 glucose-6-phosphate 1-dehydrogenase — —
Pectobacterium carotovorum WPP14 0.34 HER17_RS00465 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 HER17_RS11780 glucose-6-phosphate dehydrogenase low > 75
Escherichia coli HS(pFamp)R (ATCC 700891) 0.33 OHPLBJKB_00238 Ribosomal RNA small subunit methyltransferase D 0.44 OHPLBJKB_01877 Glucose-6-phosphate 1-dehydrogenase low > 73
Marinobacter adhaerens HP15 0.32 HP15_3491 conserved hypothetical protein 0.45 HP15_2179 glucose-6-phosphate 1-dehydrogenase low > 73
Pseudomonas sp. RS175 0.32 PFR28_04262 Ribosomal RNA small subunit methyltransferase D 0.47 PFR28_00573 Glucose-6-phosphate 1-dehydrogenase low > 88
Pseudomonas fluorescens FW300-N2C3 0.32 AO356_13320 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.47 AO356_05160 glucose-6-phosphate dehydrogenase low > 104
Vibrio cholerae E7946 ATCC 55056 0.32 CSW01_00740 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.39 CSW01_18625 glucose-6-phosphate dehydrogenase low > 62
Escherichia coli ECOR27 0.32 NOLOHH_08500 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 NOLOHH_16845 zwf glucose-6-phosphate dehydrogenase — —
Escherichia coli Nissle 1917 0.32 ECOLIN_RS19815 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 ECOLIN_RS10315 glucose-6-phosphate dehydrogenase — —
Escherichia coli ECRC102 0.32 NIAGMN_14465 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 NIAGMN_01725 zwf glucose-6-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N2E2 0.32 Pf6N2E2_4579 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.47 Pf6N2E2_2885 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 103
Escherichia coli ECRC99 0.32 KEDOAH_11445 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 KEDOAH_01770 zwf glucose-6-phosphate dehydrogenase — —
Escherichia coli ECRC101 0.32 MCAODC_07225 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 MCAODC_19070 zwf glucose-6-phosphate dehydrogenase — —
Escherichia coli ECRC101 0.32 OKFHMN_16695 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 OKFHMN_26335 zwf glucose-6-phosphate dehydrogenase — —
Escherichia coli BL21 0.32 ECD_03314 16S rRNA m(2)G966 methyltransferase, SAM-dependent 0.44 ECD_01823 glucose-6-phosphate 1-dehydrogenase — —
Enterobacter sp. TBS_079 0.32 MPMX20_04342 Ribosomal RNA small subunit methyltransferase D 0.44 MPMX20_02757 Glucose-6-phosphate 1-dehydrogenase low > 85
Escherichia coli BW25113 0.32 b3465 yhhF predicted methyltransferase (NCBI) 0.44 b1852 zwf glucose-6-phosphate 1-dehydrogenase (NCBI) — —
Escherichia fergusonii Becca 0.32 EFB2_00351 Ribosomal RNA small subunit methyltransferase D 0.44 EFB2_02091 Glucose-6-phosphate 1-dehydrogenase low > 86
Escherichia coli ECRC98 0.32 JDDGAC_20325 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 JDDGAC_00910 zwf glucose-6-phosphate dehydrogenase — —
Escherichia coli ECRC62 0.32 BNILDI_03015 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 BNILDI_15640 zwf glucose-6-phosphate dehydrogenase — —
Escherichia coli ECOR38 0.32 HEPCGN_15525 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 HEPCGN_04740 zwf glucose-6-phosphate dehydrogenase low > 85
Rhodanobacter denitrificans MT42 0.31 LRK55_RS13080 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.51 LRK55_RS07600 glucose-6-phosphate dehydrogenase — —
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.31 GFF540 16S rRNA (guanine(966)-N(2))-methyltransferase (EC 2.1.1.171) 0.44 GFF1631 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 78
Rhodanobacter denitrificans FW104-10B01 0.31 LRK54_RS13340 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.51 LRK54_RS07870 glucose-6-phosphate dehydrogenase — —
Shewanella amazonensis SB2B 0.31 Sama_3469 hypothetical protein (RefSeq) 0.45 Sama_1812 glucose-6-phosphate 1-dehydrogenase (RefSeq) — —
Erwinia tracheiphila SCR3 0.31 LU632_RS19285 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 LU632_RS13360 zwf glucose-6-phosphate dehydrogenase low > 74
Pseudomonas fluorescens GW456-L13 0.31 PfGW456L13_990 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.47 PfGW456L13_1901 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) low > 87
Enterobacter asburiae PDN3 0.31 EX28DRAFT_4299 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.44 EX28DRAFT_0704 glucose-6-phosphate 1-dehydrogenase — —
Dickeya dianthicola 67-19 0.31 HGI48_RS20760 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 HGI48_RS10165 glucose-6-phosphate dehydrogenase low > 71
Klebsiella michiganensis M5al 0.31 BWI76_RS26405 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 BWI76_RS18105 glucose-6-phosphate dehydrogenase — —
Rhodanobacter sp. FW510-T8 0.30 OKGIIK_02580 rsmD 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.52 OKGIIK_14360 zwf glucose-6-phosphate dehydrogenase — —
Rahnella sp. WP5 0.30 EX31_RS14835 16S rRNA (guanine(966)-N(2))-methyltransferase 0.45 EX31_RS10630 glucose-6-phosphate dehydrogenase — —
Dickeya dianthicola ME23 0.30 DZA65_RS21770 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 DZA65_RS10580 glucose-6-phosphate dehydrogenase low > 75
Serratia liquefaciens MT49 0.30 IAI46_00920 16S rRNA (guanine(966)-N(2))-methyltransferase 0.46 IAI46_14575 glucose-6-phosphate dehydrogenase — —
Pseudomonas fluorescens SBW25-INTG 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 PFLU_RS23725 glucose-6-phosphate dehydrogenase low > 109
Pseudomonas fluorescens SBW25 0.30 PFLU_RS28470 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.46 PFLU_RS23725 glucose-6-phosphate dehydrogenase low > 109
Pseudomonas fluorescens FW300-N2E3 0.30 AO353_08265 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.47 AO353_03360 glucose-6-phosphate dehydrogenase low > 101
Pseudomonas simiae WCS417 0.30 PS417_26825 16S rRNA methyltransferase 0.46 PS417_22110 glucose-6-phosphate dehydrogenase — —
Pseudomonas fluorescens FW300-N1B4 0.30 Pf1N1B4_2320 Ribosomal RNA small subunit methyltransferase D (EC 2.1.1.-) 0.47 Pf1N1B4_589 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) — —
Lysobacter sp. OAE881 0.30 ABIE51_RS15125 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.49 ABIE51_RS01620 glucose-6-phosphate dehydrogenase — —
Pseudomonas sp. S08-1 0.29 OH686_14220 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.50 OH686_13085 glucose-6-phosphate dehydrogenase low > 80
Shewanella loihica PV-4 0.29 Shew_3607 putative methyltransferase (RefSeq) 0.45 Shew_2048 glucose-6-phosphate 1-dehydrogenase (RefSeq) — —
Shewanella sp. ANA-3 0.29 Shewana3_3973 putative methyltransferase (RefSeq) 0.46 Shewana3_2151 glucose-6-phosphate 1-dehydrogenase (RefSeq) — —
Pseudomonas syringae pv. syringae B728a 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.47 Psyr_1120 glucose-6-phosphate 1-dehydrogenase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.29 Psyr_4754 16S rRNA m(2)G-966 methyltransferase 0.47 Psyr_1120 glucose-6-phosphate 1-dehydrogenase low > 86
Shewanella oneidensis MR-1 0.29 SO4587 conserved hypothetical protein TIGR00095 (NCBI ptt file) 0.46 SO2489 zwf glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) low > 76
Dyella japonica UNC79MFTsu3.2 0.28 ABZR86_RS19990 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.51 ABZR86_RS14700 glucose-6-phosphate dehydrogenase low > 74
Pantoea sp. MT58 0.27 IAI47_01535 16S rRNA (guanine(966)-N(2))-methyltransferase 0.44 IAI47_08495 glucose-6-phosphate dehydrogenase — —
Pseudomonas putida KT2440 0.27 PP_5114 putative adenine methyltransferase 0.51 PP_5351 glucose-6-phosphate 1-dehydrogenase low > 96
Pseudomonas stutzeri RCH2 0.27 Psest_0255 RNA methyltransferase, RsmD family 0.52 Psest_4089 glucose-6-phosphate 1-dehydrogenase — —
Phaeobacter inhibens DSM 17395 0.21 PGA1_c29260 ribosomal RNA small subunit methyltransferase D 0.43 PGA1_c15160 glucose-6-phosphate 1-dehydrogenase low > 62
Bifidobacterium breve UCC2003 0.19 BBR_RS19290 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD 0.35 BBR_RS11480 glucose-6-phosphate dehydrogenase — —
Bacteroides thetaiotaomicron VPI-5482 0.18 BT3979 putative methyltransferase (NCBI ptt file) 0.38 BT1221 glucose-6-phosphate 1-dehydrogenase (NCBI ptt file) low > 81

Not shown: 5 genomes with orthologs for GFF817 only; 25 genomes with orthologs for GFF5493 only