Conservation of cofitness between PS417_27425 and PS417_27865 in Pseudomonas simiae WCS417

70 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_27425 exopolyphosphatase 1.0 PS417_27865 LysR family transcriptional regulator 0.36 20
Pseudomonas fluorescens SBW25-INTG 0.99 PFLU_RS29090 exopolyphosphatase 0.98 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens SBW25 0.99 PFLU_RS29090 exopolyphosphatase 0.98 PFLU_RS29545 hydrogen peroxide-inducible genes activator low > 109
Pseudomonas fluorescens FW300-N2E2 0.94 Pf6N2E2_4454 Exopolyphosphatase (EC 3.6.1.11) 0.96 Pf6N2E2_4353 Hydrogen peroxide-inducible genes activator low > 103
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_2209 Exopolyphosphatase (EC 3.6.1.11) 0.92 Pf1N1B4_2106 Hydrogen peroxide-inducible genes activator low > 87
Pseudomonas fluorescens FW300-N2C3 0.94 AO356_12900 exopolyphosphatase 0.93 AO356_12385 LysR family transcriptional regulator low > 104
Pseudomonas sp. RS175 0.94 PFR28_04344 Exopolyphosphatase 0.92 PFR28_04434 Hydrogen peroxide-inducible genes activator low > 88
Pseudomonas fluorescens FW300-N2E3 0.93 AO353_08880 exopolyphosphatase 0.92 AO353_09315 LysR family transcriptional regulator low > 101
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_875 Exopolyphosphatase (EC 3.6.1.11) 0.93 PfGW456L13_773 Hydrogen peroxide-inducible genes activator low > 87
Pseudomonas syringae pv. syringae B728a ΔmexB 0.89 Psyr_0294 Exopolyphosphatase 0.96 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas syringae pv. syringae B728a 0.89 Psyr_0294 Exopolyphosphatase 0.96 Psyr_0202 transcriptional regulator, LysR family low > 86
Pseudomonas putida KT2440 0.88 PP_5216 exopolyphosphatase 0.93 PP_5309 oxidative and nitrosative stress transcriptional dual regulator 0.16 68
Pseudomonas sp. S08-1 0.81 OH686_11275 Exopolyphosphatase 0.86 OH686_13510 Hydrogen peroxide-inducible genes activator low > 80
Pseudomonas stutzeri RCH2 0.75 Psest_3731 exopolyphosphatase 0.91 Psest_4191 Transcriptional regulator low > 67
Marinobacter adhaerens HP15 0.46 HP15_228 guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase 0.65 HP15_308 oxidative stress regulatory protein OxyR low > 73
Dechlorosoma suillum PS 0.40 Dsui_2813 exopolyphosphatase 0.56 Dsui_0823 transcriptional regulator low > 51
Acinetobacter radioresistens SK82 0.39 MPMX26_00569 Exopolyphosphatase 0.26 MPMX26_02334 Hydrogen peroxide-inducible genes activator low > 36
Lysobacter sp. OAE881 0.39 ABIE51_RS14235 exopolyphosphatase 0.31 ABIE51_RS05475 LysR substrate-binding domain-containing protein low > 62
Dyella japonica UNC79MFTsu3.2 0.39 ABZR86_RS00705 Ppx/GppA phosphatase family protein 0.29 ABZR86_RS19355 DNA-binding transcriptional regulator OxyR low > 74
Dickeya dianthicola ME23 0.39 DZA65_RS16050 exopolyphosphatase 0.37 DZA65_RS21450 DNA-binding transcriptional regulator OxyR low > 75
Xanthomonas campestris pv. campestris strain 8004 0.39 Xcc-8004.4065.1 Exopolyphosphatase (EC 3.6.1.11) 0.31 Xcc-8004.4224.1 Hydrogen peroxide-inducible genes activator low > 74
Dickeya dianthicola 67-19 0.39 HGI48_RS15230 exopolyphosphatase 0.37 HGI48_RS20405 DNA-binding transcriptional regulator OxyR low > 71
Rhodanobacter sp. FW510-T8 0.38 OKGIIK_03775 ppx exopolyphosphatase 0.32 OKGIIK_01995 lysR DNA-binding transcriptional regulator OxyR low > 52
Alteromonas macleodii MIT1002 0.38 MIT1002_00871 Exopolyphosphatase 0.24 MIT1002_01120 Morphology and auto-aggregation control protein low > 70
Rhodanobacter denitrificans MT42 0.38 LRK55_RS14730 Ppx/GppA phosphatase family protein 0.31 LRK55_RS04545 LysR substrate-binding domain-containing protein low > 63
Rhodanobacter denitrificans FW104-10B01 0.38 LRK54_RS15015 Ppx/GppA family phosphatase 0.31 LRK54_RS04765 LysR substrate-binding domain-containing protein low > 59
Dickeya dadantii 3937 0.38 DDA3937_RS15155 exopolyphosphatase 0.37 DDA3937_RS00970 DNA-binding transcriptional regulator OxyR low > 74
Rahnella sp. WP5 0.37 EX31_RS22675 exopolyphosphatase 0.36 EX31_RS14170 DNA-binding transcriptional regulator OxyR low > 89
Enterobacter sp. TBS_079 0.37 MPMX20_03357 Exopolyphosphatase 0.37 MPMX20_04519 Hydrogen peroxide-inducible genes activator low > 85
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.37 GFF2166 Exopolyphosphatase (EC 3.6.1.11) 0.36 GFF2347 Hydrogen peroxide-inducible genes activator low > 78
Enterobacter asburiae PDN3 0.37 EX28DRAFT_0165 exopolyphosphatase 0.37 EX28DRAFT_4424 Transcriptional regulator — —
Pectobacterium carotovorum WPP14 0.37 HER17_RS06420 exopolyphosphatase 0.37 HER17_RS00955 DNA-binding transcriptional regulator OxyR low > 75
Vibrio cholerae E7946 ATCC 55056 0.36 CSW01_03775 exopolyphosphatase 0.34 CSW01_13340 DNA-binding transcriptional regulator OxyR low > 62
Klebsiella michiganensis M5al 0.36 BWI76_RS21000 exopolyphosphatase 0.36 BWI76_RS00865 DNA-binding transcriptional regulator OxyR low > 92
Serratia liquefaciens MT49 0.36 IAI46_18920 exopolyphosphatase 0.36 IAI46_24475 DNA-binding transcriptional regulator OxyR low > 86
Escherichia coli ECRC62 0.36 BNILDI_12255 ppx exopolyphosphatase 0.37 BNILDI_05825 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli BW25113 0.36 b2502 ppx exopolyphosphatase (NCBI) 0.37 b3961 oxyR DNA-binding transcriptional dual regulator (NCBI) low > 76
Escherichia coli ECRC98 0.36 JDDGAC_25740 ppx exopolyphosphatase 0.37 JDDGAC_17190 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli BL21 0.36 ECD_02394 exopolyphosphatase 0.37 ECD_03846 oxidative and nitrosative stress transcriptional regulator low > 60
Escherichia coli ECRC101 0.36 MCAODC_12325 ppx exopolyphosphatase 0.37 MCAODC_04065 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC101 0.36 OKFHMN_21795 ppx exopolyphosphatase 0.37 OKFHMN_13565 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC102 0.36 NIAGMN_19565 ppx exopolyphosphatase 0.37 NIAGMN_11315 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECRC99 0.36 KEDOAH_06425 ppx exopolyphosphatase 0.37 KEDOAH_14595 oxyR DNA-binding transcriptional regulator OxyR — —
Escherichia coli ECOR27 0.36 NOLOHH_13445 ppx exopolyphosphatase 0.37 NOLOHH_05700 oxyR DNA-binding transcriptional regulator OxyR low > 57
Escherichia coli ECOR38 0.36 HEPCGN_20960 ppx exopolyphosphatase 0.37 HEPCGN_12210 oxyR DNA-binding transcriptional regulator OxyR low > 85
Escherichia fergusonii Becca 0.36 EFB2_01396 Exopolyphosphatase 0.37 EFB2_04651 Hydrogen peroxide-inducible genes activator low > 86
Escherichia coli Nissle 1917 0.36 ECOLIN_RS14205 exopolyphosphatase 0.37 ECOLIN_RS22870 DNA-binding transcriptional regulator OxyR low > 52
Escherichia coli HS(pFamp)R (ATCC 700891) 0.36 OHPLBJKB_01224 Exopolyphosphatase 0.37 OHPLBJKB_04089 Hydrogen peroxide-inducible genes activator low > 73
Ralstonia solanacearum GMI1000 0.36 RS_RS07710 exopolyphosphatase 0.52 RS_RS13470 hydrogen peroxide-inducible genes activator low > 80
Ralstonia solanacearum PSI07 0.36 RPSI07_RS15335 exopolyphosphatase 0.52 RPSI07_RS11690 hydrogen peroxide-inducible genes activator low > 81
Ralstonia solanacearum IBSBF1503 0.36 RALBFv3_RS02110 exopolyphosphatase 0.52 RALBFv3_RS05605 hydrogen peroxide-inducible genes activator low > 76
Ralstonia solanacearum UW163 0.36 UW163_RS15420 exopolyphosphatase 0.52 UW163_RS08020 hydrogen peroxide-inducible genes activator — —
Ralstonia sp. UNC404CL21Col 0.35 ABZR87_RS14060 exopolyphosphatase 0.51 ABZR87_RS01255 LysR substrate-binding domain-containing protein low > 80
Paraburkholderia sabiae LMG 24235 0.35 QEN71_RS04855 exopolyphosphatase 0.51 QEN71_RS26625 LysR substrate-binding domain-containing protein low > 153
Cupriavidus basilensis FW507-4G11 0.35 RR42_RS13430 exopolyphosphatase 0.49 RR42_RS17385 LysR family transcriptional regulator low > 128
Kangiella aquimarina DSM 16071 0.35 B158DRAFT_2313 Exopolyphosphatase 0.55 B158DRAFT_0567 Transcriptional regulator low > 40
Pantoea sp. MT58 0.35 IAI47_05150 exopolyphosphatase 0.36 IAI47_00930 DNA-binding transcriptional regulator OxyR low > 76
Paraburkholderia bryophila 376MFSha3.1 0.35 H281DRAFT_04419 Ppx/GppA phosphatase 0.52 H281DRAFT_04673 transcriptional regulator, LysR family low > 103
Burkholderia phytofirmans PsJN 0.34 BPHYT_RS14105 exopolyphosphatase 0.51 BPHYT_RS03470 LysR family transcriptional regulator low > 109
Shewanella oneidensis MR-1 0.34 SO2185 ppx exopolyphosphatase (NCBI ptt file) 0.26 SO1328 transcriptional regulator, LysR family (NCBI ptt file) low > 76
Erwinia tracheiphila SCR3 0.34 LU632_RS08255 ppx exopolyphosphatase 0.36 LU632_RS19590 oxyR DNA-binding transcriptional regulator OxyR low > 74
Shewanella sp. ANA-3 0.33 Shewana3_2418 Ppx/GppA phosphatase (RefSeq) 0.26 Shewana3_3046 LysR family transcriptional regulator (RefSeq) low > 73
Castellaniella sp019104865 MT123 0.33 ABCV34_RS15575 Ppx/GppA phosphatase family protein 0.53 ABCV34_RS03575 LysR substrate-binding domain-containing protein low > 48
Acidovorax sp. GW101-3H11 0.32 Ac3H11_455 Exopolyphosphatase (EC 3.6.1.11) 0.47 Ac3H11_784 Hydrogen peroxide-inducible genes activator low > 79
Shewanella amazonensis SB2B 0.32 Sama_2012 guanosine-5'-triphosphate,3'-diphosphate diphosphatase (RefSeq) 0.24 Sama_0860 LysR family transcriptional regulator (RefSeq) low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.32 GFF4229 Exopolyphosphatase (EC 3.6.1.11) 0.44 GFF2803 Hydrogen peroxide-inducible genes activator low > 90
Shewanella loihica PV-4 0.30 Shew_3078 Ppx/GppA phosphatase (RefSeq) 0.24 Shew_1035 LysR family transcriptional regulator (RefSeq) low > 60
Variovorax sp. SCN45 0.30 GFF1091 Exopolyphosphatase (EC 3.6.1.11) 0.47 GFF5549 Hydrogen peroxide-inducible genes activator => OxyR low > 127
Variovorax sp. OAS795 0.29 ABID97_RS14590 Ppx/GppA phosphatase family protein 0.47 ABID97_RS01570 LysR substrate-binding domain-containing protein low > 91
Herbaspirillum seropedicae SmR1 0.28 HSERO_RS09440 exopolyphosphatase 0.52 HSERO_RS18935 LysR family transcriptional regulator low > 78
Echinicola vietnamensis KMM 6221, DSM 17526 0.20 Echvi_0477 Exopolyphosphatase 0.29 Echvi_1045 Transcriptional regulator low > 79

Not shown: 1 genomes with orthologs for PS417_27425 only; 24 genomes with orthologs for PS417_27865 only