Conservation of cofitness between PS417_16480 and PS417_23900 in Pseudomonas simiae WCS417

66 genomes with putative orthologs of both genes

Organism Ratio1 Gene1 Name1 Description1 Ratio2 Gene2 Name2 Description2 Cofit Rank
Pseudomonas simiae WCS417 1.0 PS417_16480 recombination factor protein RarA 1.0 PS417_23900 poly(A) polymerase 0.23 20
Pseudomonas fluorescens SBW25-INTG 0.98 PFLU_RS18520 replication-associated recombination protein A 0.99 PFLU_RS25740 polynucleotide adenylyltransferase PcnB low > 109
Pseudomonas fluorescens SBW25 0.98 PFLU_RS18520 replication-associated recombination protein A 0.99 PFLU_RS25740 polynucleotide adenylyltransferase PcnB low > 109
Pseudomonas fluorescens FW300-N1B4 0.94 Pf1N1B4_4062 FIG065221: Holliday junction DNA helicase 0.92 Pf1N1B4_2856 Poly(A) polymerase (EC 2.7.7.19) low > 87
Pseudomonas fluorescens FW300-N2E3 0.94 AO353_27640 recombination factor protein RarA 0.92 AO353_14395 poly(A) polymerase 0.18 76
Pseudomonas sp. RS175 0.93 PFR28_02606 Replication-associated recombination protein A 0.92 PFR28_03719 Poly(A) polymerase I low > 88
Pseudomonas fluorescens GW456-L13 0.93 PfGW456L13_2653 FIG065221: Holliday junction DNA helicase 0.92 PfGW456L13_1523 Poly(A) polymerase (EC 2.7.7.19) low > 87
Pseudomonas fluorescens FW300-N2C3 0.93 AO356_22185 recombination factor protein RarA 0.92 AO356_16070 poly(A) polymerase 0.25 53
Pseudomonas fluorescens FW300-N2E2 0.93 Pf6N2E2_299 FIG065221: Holliday junction DNA helicase 0.92 Pf6N2E2_5155 Poly(A) polymerase (EC 2.7.7.19) 0.27 23
Pseudomonas putida KT2440 0.91 PP_4002 DNA-dependent ATPase required for recombination 0.81 PP_4697 poly(A) polymerase low > 96
Pseudomonas syringae pv. syringae B728a 0.90 Psyr_3177 Recombination protein MgsA 0.88 Psyr_0830 Poly(A) polymerase low > 86
Pseudomonas syringae pv. syringae B728a ΔmexB 0.90 Psyr_3177 Recombination protein MgsA 0.88 Psyr_0830 Poly(A) polymerase low > 86
Pseudomonas sp. S08-1 0.87 OH686_00270 Replication-associated recombination protein RarA 0.75 OH686_17255 Poly(A) polymerase low > 80
Pseudomonas stutzeri RCH2 0.86 Psest_2034 ATPase related to the helicase subunit of the Holliday junction resolvase 0.73 Psest_0998 poly(A) polymerase low > 67
Kangiella aquimarina DSM 16071 0.66 B158DRAFT_1819 ATPase related to the helicase subunit of the Holliday junction resolvase 0.42 B158DRAFT_0058 poly(A) polymerase low > 40
Marinobacter adhaerens HP15 0.62 HP15_1817 recombination factor protein RarA 0.46 HP15_326 polyA polymerase low > 73
Klebsiella michiganensis M5al 0.59 BWI76_RS09670 recombination factor protein RarA 0.40 BWI76_RS05005 polynucleotide adenylyltransferase low > 92
Shewanella loihica PV-4 0.58 Shew_2022 recombination factor protein RarA (RefSeq) 0.41 Shew_3131 poly(A) polymerase (RefSeq) low > 60
Cupriavidus basilensis FW507-4G11 0.58 RR42_RS04355 recombination factor protein RarA 0.41 RR42_RS17235 poly(A) polymerase low > 128
Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868 0.58 GFF4896 FIG065221: Holliday junction DNA helicase 0.40 GFF89 Poly(A) polymerase (EC 2.7.7.19) low > 78
Serratia liquefaciens MT49 0.58 IAI46_08570 replication-associated recombination protein A 0.42 IAI46_21220 polynucleotide adenylyltransferase PcnB low > 86
Shewanella sp. ANA-3 0.58 Shewana3_2052 recombination factor protein RarA (RefSeq) 0.42 Shewana3_3406 poly(A) polymerase (RefSeq) low > 73
Enterobacter asburiae PDN3 0.58 EX28DRAFT_2040 ATPase related to the helicase subunit of the Holliday junction resolvase 0.40 EX28DRAFT_3732 poly(A) polymerase low > 76
Escherichia coli Nissle 1917 0.58 ECOLIN_RS04745 replication-associated recombination protein RarA 0.40 ECOLIN_RS00790 polynucleotide adenylyltransferase PcnB low > 55
Escherichia coli ECRC98 0.58 JDDGAC_09370 rarA replication-associated recombination protein RarA 0.40 JDDGAC_13950 pcnB polynucleotide adenylyltransferase PcnB low > 86
Escherichia coli BW25113 0.58 b0892 ycaJ recombination protein (NCBI) 0.40 b0143 pcnB poly(A) polymerase I (VIMSS) low > 76
Escherichia fergusonii Becca 0.58 EFB2_03169 Replication-associated recombination protein A 0.40 EFB2_03901 Poly(A) polymerase I low > 86
Escherichia coli BL21 0.58 ECD_00896 recombination intermediate processing DNA-dependent ATPase 0.40 ECD_00142 poly(A) polymerase 0.66 13
Escherichia coli ECRC99 0.58 KEDOAH_22175 rarA replication-associated recombination protein RarA 0.40 KEDOAH_17800 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli HS(pFamp)R (ATCC 700891) 0.58 OHPLBJKB_02776 Replication-associated recombination protein A 0.40 OHPLBJKB_03519 Poly(A) polymerase I low > 73
Escherichia coli ECOR38 0.58 HEPCGN_22950 rarA replication-associated recombination protein RarA 0.40 HEPCGN_08305 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli ECRC100 0.58 OKFHMN_05560 rarA replication-associated recombination protein RarA 0.40 OKFHMN_10355 pcnB polynucleotide adenylyltransferase PcnB low > 80
Escherichia coli ECRC101 0.58 MCAODC_24950 rarA replication-associated recombination protein RarA 0.40 MCAODC_00870 pcnB polynucleotide adenylyltransferase PcnB low > 87
Escherichia coli ECRC102 0.58 NIAGMN_03280 rarA replication-associated recombination protein RarA 0.40 NIAGMN_08205 pcnB polynucleotide adenylyltransferase PcnB — —
Escherichia coli ECOR27 0.57 NOLOHH_22130 rarA replication-associated recombination protein RarA 0.40 NOLOHH_02700 pcnB polynucleotide adenylyltransferase PcnB low > 75
Escherichia coli ECRC62 0.57 BNILDI_20385 rarA replication-associated recombination protein RarA 0.40 BNILDI_08970 pcnB polynucleotide adenylyltransferase PcnB low > 75
Enterobacter sp. TBS_079 0.57 MPMX20_01554 Replication-associated recombination protein A 0.41 MPMX20_00829 Poly(A) polymerase I low > 85
Paraburkholderia graminis OAS925 0.57 ABIE53_001292 putative ATPase 0.41 ABIE53_000870 poly(A) polymerase low > 113
Shewanella oneidensis MR-1 0.57 SO2308 ATPase, AAA family (NCBI ptt file) 0.41 SO0872 pcnB polyA polymerase (NCBI ptt file) low > 76
Dickeya dianthicola 67-19 0.57 HGI48_RS09620 replication-associated recombination protein A 0.42 HGI48_RS16060 polynucleotide adenylyltransferase PcnB low > 71
Erwinia tracheiphila SCR3 0.57 LU632_RS09755 replication-associated recombination protein A 0.39 LU632_RS20090 pcnB polynucleotide adenylyltransferase PcnB low > 74
Ralstonia sp. UNC404CL21Col 0.57 ABZR87_RS16030 replication-associated recombination protein A 0.40 ABZR87_RS00935 polynucleotide adenylyltransferase PcnB low > 80
Dickeya dianthicola ME23 0.57 DZA65_RS09930 replication-associated recombination protein A 0.42 DZA65_RS17145 polynucleotide adenylyltransferase PcnB low > 75
Burkholderia phytofirmans PsJN 0.57 BPHYT_RS05100 ATPase AAA 0.40 BPHYT_RS03620 poly(A) polymerase low > 109
Shewanella amazonensis SB2B 0.57 Sama_1774 recombination factor protein RarA (RefSeq) 0.41 Sama_0778 tRNA nucleotidyltransferase (CCA-adding enzyme) (RefSeq) low > 62
Paraburkholderia sabiae LMG 24235 0.57 QEN71_RS03415 replication-associated recombination protein A 0.41 QEN71_RS26465 polynucleotide adenylyltransferase PcnB low > 153
Vibrio cholerae E7946 ATCC 55056 0.57 CSW01_05630 replication-associated recombination protein A 0.43 CSW01_03145 polynucleotide adenylyltransferase PcnB low > 62
Dickeya dadantii 3937 0.57 DDA3937_RS09605 replication-associated recombination protein A 0.42 DDA3937_RS15945 polynucleotide adenylyltransferase PcnB low > 74
Ralstonia solanacearum PSI07 0.57 RPSI07_RS13205 replication-associated recombination protein A 0.40 RPSI07_RS12000 polynucleotide adenylyltransferase PcnB low > 81
Pantoea sp. MT58 0.57 IAI47_12900 replication-associated recombination protein A 0.40 IAI47_15645 polynucleotide adenylyltransferase PcnB low > 76
Herbaspirillum seropedicae SmR1 0.56 HSERO_RS09515 ATPase AAA 0.39 HSERO_RS03145 poly(A) polymerase low > 78
Dechlorosoma suillum PS 0.56 Dsui_1694 AAA ATPase 0.39 Dsui_1515 poly(A) polymerase low > 51
Paraburkholderia bryophila 376MFSha3.1 0.56 H281DRAFT_00180 Recombination protein MgsA 0.41 H281DRAFT_04706 poly(A) polymerase low > 103
Pectobacterium carotovorum WPP14 0.56 HER17_RS12345 replication-associated recombination protein A 0.41 HER17_RS05570 polynucleotide adenylyltransferase PcnB low > 75
Ralstonia solanacearum IBSBF1503 0.56 RALBFv3_RS04145 replication-associated recombination protein A 0.41 RALBFv3_RS05300 polynucleotide adenylyltransferase PcnB low > 76
Ralstonia solanacearum GMI1000 0.55 RS_RS11735 replication-associated recombination protein A 0.40 RS_RS13165 polynucleotide adenylyltransferase PcnB low > 80
Castellaniella sp019104865 MT123 0.54 ABCV34_RS07220 replication-associated recombination protein A 0.40 ABCV34_RS08810 polynucleotide adenylyltransferase PcnB low > 48
Xanthomonas campestris pv. campestris strain 8004 0.54 Xcc-8004.2744.1 FIG065221: Holliday junction DNA helicase 0.41 Xcc-8004.3054.1 Poly(A) polymerase (EC 2.7.7.19) low > 74
Alteromonas macleodii MIT1002 0.54 MIT1002_02178 Replication-associated recombination protein A 0.43 MIT1002_03692 Poly(A) polymerase I precursor low > 70
Variovorax sp. OAS795 0.53 ABID97_RS07835 replication-associated recombination protein A 0.35 ABID97_RS08710 polynucleotide adenylyltransferase PcnB low > 91
Dyella japonica UNC79MFTsu3.2 0.52 ABZR86_RS01825 replication-associated recombination protein A 0.39 ABZR86_RS00805 polynucleotide adenylyltransferase PcnB low > 74
Acidovorax sp. GW101-3H11 0.52 Ac3H11_1696 FIG065221: Holliday junction DNA helicase 0.36 Ac3H11_1313 Poly(A) polymerase (EC 2.7.7.19) — —
Rhodanobacter sp. FW510-T8 0.52 OKGIIK_07580 rarA recombination factor protein RarA 0.38 OKGIIK_03875 pcnB tRNA nucleotidyltransferase/poly(A) polymerase low > 52
Rhodanobacter denitrificans FW104-10B01 0.52 LRK54_RS17320 replication-associated recombination protein A 0.38 LRK54_RS15105 polynucleotide adenylyltransferase PcnB low > 59
Rhodanobacter denitrificans MT42 0.51 LRK55_RS17545 replication-associated recombination protein A 0.38 LRK55_RS14820 polynucleotide adenylyltransferase PcnB low > 63
Lysobacter sp. OAE881 0.50 ABIE51_RS11445 replication-associated recombination protein A 0.40 ABIE51_RS08015 polynucleotide adenylyltransferase PcnB low > 62
Hydrogenophaga sp. GW460-11-11-14-LB1 0.45 GFF777 FIG065221: Holliday junction DNA helicase 0.34 GFF3438 Poly(A) polymerase (EC 2.7.7.19) low > 90

Not shown: 33 genomes with orthologs for PS417_16480 only; 0 genomes with orthologs for PS417_23900 only